Orion David Weiner
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Orion David Weiner has a total of 441 co-authors. Here are the top co-authors by number of shared publications:
- Henry De Belly
Cardiovascular Research Institute, University of California, San Francisco, CA, USA
11 shared publications - Brian R. Graziano
UCSF
7 shared publications - Jason P. Town
Cardiovascular Research Institute, University of California
7 shared publications - Tamas L. Nagy
Department of Biochemistry and Biophysics, University of California, San Francisco
7 shared publications - Arthur Millius
Department of Genome Informatics, Research Institute for Microbial Diseases (RIMD), The University of Osaka , 565-0871Osaka
5 shared publications - Bo Huang
Department of Pharmaceutical Chemistry, University of California at San Francisco
5 shared publications
Latest Publications
- Open Access
From flocks to swarms: rewriting the rules of collective cell migration
From flocking birds to swarming insects, collective motion enables groups to accomplish tasks beyond the capabilities of individuals. These behaviors emerge from local interactions among group members, but the interaction rules that organize collectives at the cellular scale remain poorly understood, in part because they are difficult to manipulate experimentally. Here we develop a cell-machine interface that enables us to rewrite the rules of collective migration. Cell-cell interaction rules are specified in software and implemented in living cells through real-time computer vision and closed-loop optogenetic control. Using a single engineered cell line, we program cells to self-organize into flocks, to propagate regenerative signal relays that recapitulate the interaction logic of immune-cell swarms, and to collectively navigate guidance cues that individual cells cannot. Our work shows that altering simple rules of cell-cell interaction is sufficient to generate new emergent collective capabilities. This approach provides an experimental framework for discovering the organizational principles of multicellular coordination and designing synthetic collectives with capabilities beyond those of their individual members. Abstract Figure:
Open AccessFrom flocks to swarms: rewriting the rules of collective cell migration
From flocking birds to swarming insects, collective motion enables groups to accomplish tasks beyond the capabilities of individuals. These behaviors emerge from local interactions among group members, but the interaction rules that organize collectives at the cellular scale remain poorly understood, in part because they are difficult to manipulate experimentally. Here we develop a cell-machine interface that enables us to rewrite the rules of collective migration. Cell-cell interaction rules are specified in software and implemented in living cells through real-time computer vision and closed-loop optogenetic control. Using a single engineered cell line, we program cells to self-organize into flocks, to propagate regenerative signal relays that recapitulate the interaction logic of immune-cell swarms, and to collectively navigate guidance cues that individual cells cannot. Our work shows that altering simple rules of cell-cell interaction is sufficient to generate new emergent collective capabilities. This approach provides an experimental framework for discovering the organizational principles of multicellular coordination and designing synthetic collectives with capabilities beyond those of their individual members. Abstract Figure:
- 4 September 2026
- Published by American Association for the Advancement of Science (AAAS) in Science Immunology
- Vol. 11 (123)
Adaptive motility enables neutrophils to rapidly navigate confined capillaries
To reach inflamed tissues, neutrophils must traverse capillaries as narrow as 2 micrometers. However, how they do so without compromising blood flow or capillary function has remained unclear. By combining intravital live-cell imaging with biomimetic microdevices, we show that neutrophils maintain migration speed in capillaries across increasing levels of confinement. This behavior was not shared by other leukocytes and was independent of nuclear properties. Instead, confinement rapidly engaged Rho-dependent actomyosin contractility at the cell rear, thereby offsetting the increased mechanical resistance imposed by confinement. Disrupting this adaptive response caused neutrophil jamming and eventual occlusion of confined capillary-like networks. These findings identify a neutrophil-intrinsic mechanism that couples capillary confinement to rapid migratory adaptation, helping preserve vascular patency and potentially limiting tissue dysfunction during inflammation.
- 4 September 2026
- Published by American Association for the Advancement of Science (AAAS) in Science Immunology
- Vol. 11 (123)
Adaptive motility enables neutrophils to rapidly navigate confined capillaries
To reach inflamed tissues, neutrophils must traverse capillaries as narrow as 2 micrometers. However, how they do so without compromising blood flow or capillary function has remained unclear. By combining intravital live-cell imaging with biomimetic microdevices, we show that neutrophils maintain migration speed in capillaries across increasing levels of confinement. This behavior was not shared by other leukocytes and was independent of nuclear properties. Instead, confinement rapidly engaged Rho-dependent actomyosin contractility at the cell rear, thereby offsetting the increased mechanical resistance imposed by confinement. Disrupting this adaptive response caused neutrophil jamming and eventual occlusion of confined capillary-like networks. These findings identify a neutrophil-intrinsic mechanism that couples capillary confinement to rapid migratory adaptation, helping preserve vascular patency and potentially limiting tissue dysfunction during inflammation.
- 25 August 2026
- Published by Springer Nature in Nature Cell Biology
- Vol. 28 (9) , 1799-1813
Elevated contractility drives implantation failure in mouse embryos from aged females
- 25 August 2026
- Published by Springer Nature in Nature Cell Biology
- Vol. 28 (9) , 1799-1813
Elevated contractility drives implantation failure in mouse embryos from aged females
- Open Access
Mechanochemical Feedback Enables Efficient Navigation in Complex Chemical Gradients
Neutrophils move through narrow pores, convoluted channels, and tight spaces in tissue to find infection sites. Their ability to sense weak chemical gradients, undergo directed motion, and solve such path-finding problems rests on internal GTPase signaling circuits that control the front protrusion and rear retraction of the cell. Here we explore several variants of known core polarity circuits, with local and long-ranged negative feedback, including inhibitor downstream of Rac, Rac-Rho antagonism, and effects of membrane tension. The resulting reaction-diffusion (RD) equations for Rac and Rho are then used to simulate protrusion-retractions along the edge of a simulated motile cell. We visualize how cells navigate through narrow tracks with sharp corners and weak chemical gradients in 2D. Our metrics for cell performance include polarity initiation, wall-collision intensity, and track completion. In this way, we expose how Rac and Rho, together with their immediate down and upstream components can fine-tune neutrophil motility through complex environments.
Open AccessMechanochemical Feedback Enables Efficient Navigation in Complex Chemical Gradients
Neutrophils move through narrow pores, convoluted channels, and tight spaces in tissue to find infection sites. Their ability to sense weak chemical gradients, undergo directed motion, and solve such path-finding problems rests on internal GTPase signaling circuits that control the front protrusion and rear retraction of the cell. Here we explore several variants of known core polarity circuits, with local and long-ranged negative feedback, including inhibitor downstream of Rac, Rac-Rho antagonism, and effects of membrane tension. The resulting reaction-diffusion (RD) equations for Rac and Rho are then used to simulate protrusion-retractions along the edge of a simulated motile cell. We visualize how cells navigate through narrow tracks with sharp corners and weak chemical gradients in 2D. Our metrics for cell performance include polarity initiation, wall-collision intensity, and track completion. In this way, we expose how Rac and Rho, together with their immediate down and upstream components can fine-tune neutrophil motility through complex environments.
- Top Cited PapersOpen Access
- 10 June 2026
- Published by Springer Nature in Nature Cell Biology
- Vol. 28 (6) , 1244-1257
Long-range mutual activation establishes Rho and Rac polarity during cell migration
In migrating cells, the GTPase Rac organizes a protrusive front, whereas Rho organizes a contractile back. How these GTPases are positioned at opposite poles remains unclear. We leverage optogenetics, mechanical perturbations, and mathematical modelling to reveal a surprising mechanochemical long-range mutual activation between front and back polarity programmes that complements their well-known local mutual inhibition. Rac-based protrusions elevate membrane tension, stimulating an mTORC2-dependent activation of Rho at the opposite side of the cell. Conversely, Rho-mediated contractility induces cortical-flow-based regulation of phosphoinositide signalling that triggers Rac activation distally. We develop a minimal mechanochemical model to explain how long-range facilitation, together with local inhibition, enables robust Rho and Rac partitioning. Our findings demonstrate how the actin cortex and plasma membrane interact as an integrated mechanochemical system for long-range Rac–Rho patterning. This circuit is required for efficient polarity and migration in primary human T cells and is conserved in epithelial cells, highlighting the generality of this mechanism.
- 10 June 2026
- Published by Springer Nature in Nature Cell Biology
- Vol. 28 (6) , 1244-1257
Top Cited PapersOpen AccessLong-range mutual activation establishes Rho and Rac polarity during cell migration
In migrating cells, the GTPase Rac organizes a protrusive front, whereas Rho organizes a contractile back. How these GTPases are positioned at opposite poles remains unclear. We leverage optogenetics, mechanical perturbations, and mathematical modelling to reveal a surprising mechanochemical long-range mutual activation between front and back polarity programmes that complements their well-known local mutual inhibition. Rac-based protrusions elevate membrane tension, stimulating an mTORC2-dependent activation of Rho at the opposite side of the cell. Conversely, Rho-mediated contractility induces cortical-flow-based regulation of phosphoinositide signalling that triggers Rac activation distally. We develop a minimal mechanochemical model to explain how long-range facilitation, together with local inhibition, enables robust Rho and Rac partitioning. Our findings demonstrate how the actin cortex and plasma membrane interact as an integrated mechanochemical system for long-range Rac–Rho patterning. This circuit is required for efficient polarity and migration in primary human T cells and is conserved in epithelial cells, highlighting the generality of this mechanism.
- Open Access
Arachidonic acid availability controls neutrophil swarm initiation and scaling
Neutrophils are first responders of the vertebrate immune system. To efficiently converge on sites of injury and infection, neutrophils engage in a collective migration process known as swarming, in which a small number of activated cells generate amplified recruitment of hundreds to thousands of additional neutrophils. How neutrophils initiate, scale, and terminate these swarms is not well understood. Here we define key roles for the mechanosensitive phospholipase cPLA 2 and its product, arachidonic acid (AA), in swarm initiation and scaling. We observe that swarm-initiating neutrophils satisfy the conditions for cPLA 2 activation through two coincident inputs: yeast-contact-mediated Ca 2+ influx and nuclear stretch following cell spreading along fungal hyphae and clusters. This co-requirement for both chemical and physical features of pathogens may explain how neutrophils restrict swarming to insults that require collective action. We further demonstrate that AA release is necessary and sufficient for swarming and that AA levels regulate swarm magnitude. We propose that neutrophils share AA across multiple yeastengaged cells to collectively assess infection magnitude. Because calcium influx, nuclear deformation, and cPLA 2 -mediated AA generation are also features of sterile-injury inflammatory responses, our findings suggest a unifying circuit for swarm regulation across injury and infection contexts.
Open AccessArachidonic acid availability controls neutrophil swarm initiation and scaling
Neutrophils are first responders of the vertebrate immune system. To efficiently converge on sites of injury and infection, neutrophils engage in a collective migration process known as swarming, in which a small number of activated cells generate amplified recruitment of hundreds to thousands of additional neutrophils. How neutrophils initiate, scale, and terminate these swarms is not well understood. Here we define key roles for the mechanosensitive phospholipase cPLA 2 and its product, arachidonic acid (AA), in swarm initiation and scaling. We observe that swarm-initiating neutrophils satisfy the conditions for cPLA 2 activation through two coincident inputs: yeast-contact-mediated Ca 2+ influx and nuclear stretch following cell spreading along fungal hyphae and clusters. This co-requirement for both chemical and physical features of pathogens may explain how neutrophils restrict swarming to insults that require collective action. We further demonstrate that AA release is necessary and sufficient for swarming and that AA levels regulate swarm magnitude. We propose that neutrophils share AA across multiple yeastengaged cells to collectively assess infection magnitude. Because calcium influx, nuclear deformation, and cPLA 2 -mediated AA generation are also features of sterile-injury inflammatory responses, our findings suggest a unifying circuit for swarm regulation across injury and infection contexts.
- 30 March 2026
- Published by Cold Spring Harbor Laboratory in Cold Spring Harbor Perspectives in Biology
Many Cells Make Light Work: Self-Generated Gradients Organize Dictyostelium Aggregates and Neutrophil Swarms
Cells work together to accomplish complex tasks. For example, both neutrophils and Dictyostelid collectives use self-generated multicellular signaling gradients to coordinate aggregation over large areas through local interactions. However, these aggregation programs occur for different reasons that necessitate different implementations. Dictyostelids are soil-dwelling amoeba that aggregate when starving to facilitate dispersal to new locations. These aggregates do not require specific locations or group sizes. In contrast, neutrophils are innate immune cells that collectively migrate to sites of injury and infection. These swarms need to occur in specific locations and must be constrained in size to avoid collateral damage to the host. Here, we review how these evolutionarily divergent systems sculpt long-range gradients at the molecular and cellular levels, discussing their similarities and differences in light of their distinctive goals. Convergence on self-generated gradients for aggregation despite different goals suggests that it is an optimal strategy to bring individuals together in complex environments.
- 30 March 2026
- Published by Cold Spring Harbor Laboratory in Cold Spring Harbor Perspectives in Biology
Many Cells Make Light Work: Self-Generated Gradients Organize Dictyostelium Aggregates and Neutrophil Swarms
Cells work together to accomplish complex tasks. For example, both neutrophils and Dictyostelid collectives use self-generated multicellular signaling gradients to coordinate aggregation over large areas through local interactions. However, these aggregation programs occur for different reasons that necessitate different implementations. Dictyostelids are soil-dwelling amoeba that aggregate when starving to facilitate dispersal to new locations. These aggregates do not require specific locations or group sizes. In contrast, neutrophils are innate immune cells that collectively migrate to sites of injury and infection. These swarms need to occur in specific locations and must be constrained in size to avoid collateral damage to the host. Here, we review how these evolutionarily divergent systems sculpt long-range gradients at the molecular and cellular levels, discussing their similarities and differences in light of their distinctive goals. Convergence on self-generated gradients for aggregation despite different goals suggests that it is an optimal strategy to bring individuals together in complex environments.
- Open Access
- 24 February 2026
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 123 (9)
Class-I myosin responds to changes in membrane tension during clathrin-mediated endocytosis in human induced pluripotent stem cells
Clathrin-mediated endocytosis (CME) is an essential cellular process that needs to operate efficiently across a wide range of conditions. Internalization of the endocytic site involves forces generated by membrane-bound proteins and Arp2/3-mediated branched actin filament assembly to bend the plasma membrane from flat to omega-shaped. In mammalian CME, the requirement for a branched actin filament network varies depending on cell type and differences in membrane tension. However, how the actin network adapts to changes in load in order to ensure robustness of this process over a range of membrane tensions is not understood. Here, we combine live-cell imaging and superresolution microscopy of genome-edited human induced pluripotent stem cells to investigate the role of the mammalian class-I myosin, Myosin1E (Myo1E), in load adaptation. Under normal conditions, sites that recruit Myo1E are rare and exhibit slow CME dynamics. However, as membrane tension increases and CME dynamics are slowed globally, Myo1E is recruited to more sites, likely to increase actin assembly and motor activity, resulting in increased force generation to rescue stalled sites and promote internalization. Loss of Myo1E results in increased Arp2/3 complex lifetime at CME sites under normal conditions, and at high membrane tension, these sites fail to recruit as many Arp2/3 molecules. We propose that Myo1E is recruited to CME sites that have stalled due to increased membrane tension, where it helps build a more effective branched actin network by generating force through motor activity and recruiting additional Arp2/3 complexes to rescue stalled sites.
- 24 February 2026
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 123 (9)
Open AccessClass-I myosin responds to changes in membrane tension during clathrin-mediated endocytosis in human induced pluripotent stem cells
Clathrin-mediated endocytosis (CME) is an essential cellular process that needs to operate efficiently across a wide range of conditions. Internalization of the endocytic site involves forces generated by membrane-bound proteins and Arp2/3-mediated branched actin filament assembly to bend the plasma membrane from flat to omega-shaped. In mammalian CME, the requirement for a branched actin filament network varies depending on cell type and differences in membrane tension. However, how the actin network adapts to changes in load in order to ensure robustness of this process over a range of membrane tensions is not understood. Here, we combine live-cell imaging and superresolution microscopy of genome-edited human induced pluripotent stem cells to investigate the role of the mammalian class-I myosin, Myosin1E (Myo1E), in load adaptation. Under normal conditions, sites that recruit Myo1E are rare and exhibit slow CME dynamics. However, as membrane tension increases and CME dynamics are slowed globally, Myo1E is recruited to more sites, likely to increase actin assembly and motor activity, resulting in increased force generation to rescue stalled sites and promote internalization. Loss of Myo1E results in increased Arp2/3 complex lifetime at CME sites under normal conditions, and at high membrane tension, these sites fail to recruit as many Arp2/3 molecules. We propose that Myo1E is recruited to CME sites that have stalled due to increased membrane tension, where it helps build a more effective branched actin network by generating force through motor activity and recruiting additional Arp2/3 complexes to rescue stalled sites.
- Open Access
Class-I myosin responds to changes in membrane tension during clathrin-mediated endocytosis in human induced pluripotent stem cells
Clathrin-mediated endocytosis (CME) is an essential cellular process that needs to operate efficiently across a wide range of conditions. Internalization of the endocytic site involves forces generated by membrane-bound proteins and Arp2/3-mediated branched actin filament assembly to bend the plasma membrane (PM) from flat to omega-shaped. In mammalian CME, the requirement for a branched actin filament network varies depending on cell type and differences in membrane tension. However, how the actin network adapts to changes in load in order to ensure robustness of this process over a range of membrane tensions is not understood. Here, we combine live-cell imaging and super-resolution microscopy of genome-edited human induced pluripotent stem cells (hiPSCs) to investigate the role of the mammalian class-I myosin, Myosin1E (Myo1E), in load adaptation. Under normal conditions, sites that recruit Myo1E are rare and exhibit slow CME dynamics. However, as membrane tension increases and CME dynamics are slowed globally, Myo1E is recruited to more sites, likely to assemble more branched actin, resulting in increased force generation to rescue stalled sites and promote internalization. Loss of Myo1E results in increased Arp2/3 complex lifetime at CME sites under normal conditions, and at high membrane tension, these sites fail to recruit as many Arp2/3 molecules. We propose that Myo1E is recruited to CME sites that have stalled due to increased membrane tension, where it helps build a more effective branched actin network by generating force through motor activity and recruiting additional Arp2/3 complexes to rescue stalled sites. Significance: For mammalian cells to internalize extracellular cargo via clathrin-mediated endocytosis (CME), specific regions of the plasma membrane (PM) must bend from flat to inwardly curved, a process that requires force-generating proteins. One key component in generating this force during CME is the branched actin network, in which actin filaments polymerize against the plasma membrane. When PM tension increases, more force is required to generate curvature, prompting the assembly of actin and actin associated proteins to aid the process. We demonstrate that the class-I myosin motor, Myosin1E (Myo1E), becomes increasingly crucial as membrane tension rises, presumably to build a more effective branched actin network to facilitate internalization of slowed sites.
Open AccessClass-I myosin responds to changes in membrane tension during clathrin-mediated endocytosis in human induced pluripotent stem cells
Clathrin-mediated endocytosis (CME) is an essential cellular process that needs to operate efficiently across a wide range of conditions. Internalization of the endocytic site involves forces generated by membrane-bound proteins and Arp2/3-mediated branched actin filament assembly to bend the plasma membrane (PM) from flat to omega-shaped. In mammalian CME, the requirement for a branched actin filament network varies depending on cell type and differences in membrane tension. However, how the actin network adapts to changes in load in order to ensure robustness of this process over a range of membrane tensions is not understood. Here, we combine live-cell imaging and super-resolution microscopy of genome-edited human induced pluripotent stem cells (hiPSCs) to investigate the role of the mammalian class-I myosin, Myosin1E (Myo1E), in load adaptation. Under normal conditions, sites that recruit Myo1E are rare and exhibit slow CME dynamics. However, as membrane tension increases and CME dynamics are slowed globally, Myo1E is recruited to more sites, likely to assemble more branched actin, resulting in increased force generation to rescue stalled sites and promote internalization. Loss of Myo1E results in increased Arp2/3 complex lifetime at CME sites under normal conditions, and at high membrane tension, these sites fail to recruit as many Arp2/3 molecules. We propose that Myo1E is recruited to CME sites that have stalled due to increased membrane tension, where it helps build a more effective branched actin network by generating force through motor activity and recruiting additional Arp2/3 complexes to rescue stalled sites. Significance: For mammalian cells to internalize extracellular cargo via clathrin-mediated endocytosis (CME), specific regions of the plasma membrane (PM) must bend from flat to inwardly curved, a process that requires force-generating proteins. One key component in generating this force during CME is the branched actin network, in which actin filaments polymerize against the plasma membrane. When PM tension increases, more force is required to generate curvature, prompting the assembly of actin and actin associated proteins to aid the process. We demonstrate that the class-I myosin motor, Myosin1E (Myo1E), becomes increasingly crucial as membrane tension rises, presumably to build a more effective branched actin network to facilitate internalization of slowed sites.
- Open Access
S1P induces bleb-based T cell motility via S1PR1-dependent activation of RhoA and WNK1
In vivo, the chemokine CCL19 and its receptor CCR7 control T cell retention in lymph nodes, while the lipid chemoattractant spingosine-1-phosphate (S1P) drives T cell egress from lymphoid organs. CCL19 is known to activate actin polymerization at the leading edge of migrating cells, generating a mode of motility driven by lamellipodial protrusions. In contrast, we showed recently that S1P induces a transient lamellipodial response, followed by pressure-driven bleb-based motility. Here, we elucidate the mechanisms controlling S1P responses in naïve T cells. We show that S1P signals through S1PR1, with coupling through Gai. In contrast to CCR7, which signals through Gai to induce sustained Rac1 activation, S1PR1 engagement yields only weak and transient Rac1 activation; the dominant response is sustained activation of RhoA. This pathway, together with a pathway involving phospholipase C and myosin light chain kinase, results in phosphorylation of myosin regulatory light chain (MLC) and enhanced myosin contractility. Inhibition of mTORC2 blocks MLC phosphorylation, consistent with evidence that tension sensing by mTORC2 can couple Rac1 and RhoA signaling during leukocyte migration. Surprisingly, although RhoA pathway inhibitors blocked S1P-induced MLC phosphorylation and blebbing, they failed to block S1P-dependent chemotaxis. This led to the identification of a second arm of the S1P response: WNK1-dependent phosphorylation of SPAK1 and OSXR1, proteins that regulate ion channels and water influx. Partial WNK1 inhibition, together with inhibition of myosin contractility, was sufficient to block S1P-induced blebbing and chemotaxis, indicating that S1P-driven T cell migration involves coordinate activation of myosin contractility and water influx. One sentence summary: S1P signals elicit sustained RhoA activation and water influx to drive bleb-based T cell motility.\
Open AccessS1P induces bleb-based T cell motility via S1PR1-dependent activation of RhoA and WNK1
In vivo, the chemokine CCL19 and its receptor CCR7 control T cell retention in lymph nodes, while the lipid chemoattractant spingosine-1-phosphate (S1P) drives T cell egress from lymphoid organs. CCL19 is known to activate actin polymerization at the leading edge of migrating cells, generating a mode of motility driven by lamellipodial protrusions. In contrast, we showed recently that S1P induces a transient lamellipodial response, followed by pressure-driven bleb-based motility. Here, we elucidate the mechanisms controlling S1P responses in naïve T cells. We show that S1P signals through S1PR1, with coupling through Gai. In contrast to CCR7, which signals through Gai to induce sustained Rac1 activation, S1PR1 engagement yields only weak and transient Rac1 activation; the dominant response is sustained activation of RhoA. This pathway, together with a pathway involving phospholipase C and myosin light chain kinase, results in phosphorylation of myosin regulatory light chain (MLC) and enhanced myosin contractility. Inhibition of mTORC2 blocks MLC phosphorylation, consistent with evidence that tension sensing by mTORC2 can couple Rac1 and RhoA signaling during leukocyte migration. Surprisingly, although RhoA pathway inhibitors blocked S1P-induced MLC phosphorylation and blebbing, they failed to block S1P-dependent chemotaxis. This led to the identification of a second arm of the S1P response: WNK1-dependent phosphorylation of SPAK1 and OSXR1, proteins that regulate ion channels and water influx. Partial WNK1 inhibition, together with inhibition of myosin contractility, was sufficient to block S1P-induced blebbing and chemotaxis, indicating that S1P-driven T cell migration involves coordinate activation of myosin contractility and water influx. One sentence summary: S1P signals elicit sustained RhoA activation and water influx to drive bleb-based T cell motility.\