YZYongli Zhang

Yongli Zhang

*This is an algorithmically generated author record based on publicly available information.

Current Organizations / Institutes

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Previous Organizations / Institutes

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Yongli Zhang has a total of 135 co-authors. Here are the top co-authors by number of shared publications:


Latest Publications

  • Open Access

    Nonlinear stiffness of NompC gating spring and its implication in mechanotransduction

    by Yukun Wang, Peng Jin, Avinash Kumar, Lily Jan, Yifan Cheng, Yuh-Nung Jan, Yongli Zhang

    Cytoskeleton-tethered mechanosensitive channels (MSCs) use compliant gating springs to convert mechanical stimuli into electrical signals for sensations like sound and touch. The mechanical properties of these gating springs are poorly understood. We investigated the homotetrameric NompC channel, which contains long ankyrin-repeat domains (ARDs), using a toehold-mediated strand displacement method to tether single membrane proteins. This method allowed precise force application and extension measurement with optical tweezers. Our results show that a single NompC complex has a low stiffness of ~0.7 piconewtons per nanometer when pulled from one ARD, with stepwise unfolding beginning at ~7 piconewtons, leading to nonlinear stiffness. ARD truncation indicates strong lateral interactions between ARDs. Computational analyses suggest that this nonlinear, low stiffness may regulate NompC’s sensitivity, dynamic range, and kinetics in detecting mechanical stimuli. Our findings highlight the role of a compliant, unfolding-refolding gating spring in facilitating a graded response in MSC ion transduction across diverse mechanical stimuli.

  • Open Access

    SNAP-25 disease variants affect synaptic transmission by destabilizing SNARE complexes within a multimeric SNARE ring

    by Victoria Amstrup Vold, Jie Yang, Maiken Østergaard, Anna Schrøder Lassen, Anna Kádková, Avinash Kumar, Alexander M. Walter, Yongli Zhang, Jakob B. Sørensen

  • Open Access

    Genetically encoded mechano-sensors with versatile readouts and compact size

    by Yuan Ren, Jie Yang, Takumi Saito, Oliver Glomb, Avinash Kumar, Sayed Iman Mousavi, Brigitte Naughton, Christina de Fontnouvelle, Barbara Fujita, Zhiqun Xi, et al.

    Mechanical forces are critical for virtually all fundamental biological processes, yet quantification of mechanical forces at the molecular scale in vivo remains challenging. Here, we present a new strategy using calibrated coiled coils as genetically encoded, compact, tunable, and modular mechano-sensors to substantially simplify force measurement in vivo , via diverse readouts (luminescence, fluorescence and analytical biochemistry) and instrumentation readily available in biology labs. We demonstrate the broad applicability and ease-of-use of these coiled coil mechano-sensors by measuring forces during cytokinesis (formin Cdc12) and endocytosis (epsin Ent1) in yeast, force distributions in nematode axons (β-spectrin UNC-70), and forces transmitted to the nucleus (mini-nesprin-2G) and within focal adhesions (vinculin) in mammalian cells. We report discoveries in intracellular force transmission that have been elusive to existing tools.


  • Open Access

    Nonlinear compliance of NompC gating spring and its implication in mechanotransduction

    by Yukun Wang, Peng Jin, Avinash Kumar, Lily Jan, Yifan Cheng, Yuh-Nung Jan, Yongli Zhang

    Cytoskeleton-tethered mechanosensitive channels (MSCs) utilize compliant proteins or protein domains called gating springs to convert mechanical stimuli into electric signals, enabling sound and touch sensation and proprioception. The mechanical properties of these gating springs, however, remain elusive. Here, we explored the mechanical properties of the homotetrameric NompC complex containing long ankyrin-repeat domains (ARDs). We developed a toehold-mediated strand displacement approach to tether single membrane proteins, allowing us to exert force on them and precisely measure their absolute extension using optical tweezers. Our findings revealed that each ARD has a low stiffness of ∼0.7 pN/nm and begins to unfold stepwise at ∼7 pN, leading to nonlinear compliance. Our calculations indicate that this nonlinear compliance may help regulate NompC’s sensitivity, dynamic range, and kinetics to detect mechanical stimuli. Overall, our research highlights the importance of a compliant and unfolding-refolding gating spring in facilitating a graded response of MSC ion transduction across a wide spectrum of mechanical stimuli.

  • Open Access

    Tomosyns attenuate SNARE assembly and synaptic depression by binding to VAMP2-containing template complexes

    by Marieke Meijer, Miriam Öttl, Jie Yang, Aygul Subkhangulova, Avinash Kumar, Zicheng Feng, Torben W. van Voorst, Alexander J. Groffen, Jan R. T. van Weering, Yongli Zhang, et al.

    Tomosyns are widely thought to attenuate membrane fusion by competing with synaptobrevin-2/VAMP2 for SNARE-complex assembly. Here, we present evidence against this scenario. In a novel mouse model, tomosyn-1/2 deficiency lowered the fusion barrier and enhanced the probability that synaptic vesicles fuse, resulting in stronger synapses with faster depression and slower recovery. While wild-type tomosyn-1m rescued these phenotypes, substitution of its SNARE motif with that of synaptobrevin-2/VAMP2 did not. Single-molecule force measurements indeed revealed that tomosyn’s SNARE motif cannot substitute synaptobrevin-2/VAMP2 to form template complexes with Munc18-1 and syntaxin-1, an essential intermediate for SNARE assembly. Instead, tomosyns extensively bind synaptobrevin-2/VAMP2-containing template complexes and prevent SNAP-25 association. Structure-function analyses indicate that the C-terminal polybasic region contributes to tomosyn’s inhibitory function. These results reveal that tomosyns regulate synaptic transmission by cooperating with synaptobrevin-2/VAMP2 to prevent SNAP-25 binding during SNARE assembly, thereby limiting initial synaptic strength and equalizing it during repetitive stimulation.


  • Open Access

    Lipid osmosis, membrane tension, and other mechanochemical driving forces of lipid flow

    by Yongli Zhang, Chenxiang Lin

    Nonvesicular lipid transport among different membranes or membrane domains plays crucial roles in lipid homeostasis and organelle biogenesis. However, the forces that drive such lipid transport are not well understood. We propose that lipids tend to flow towards the membrane area with a higher membrane protein density in a process termed lipid osmosis . This process lowers the membrane tension in the area, resulting in a membrane tension difference called osmotic membrane tension . We examine the thermodynamic basis and experimental evidence of lipid osmosis and osmotic membrane tension. We predict that lipid osmosis can drive bulk lipid flows between different membrane regions through lipid transfer proteins, scramblases, or other similar barriers that selectively pass lipids but not membrane proteins. We also speculate on the biological functions of lipid osmosis. Finally, we explore other driving forces for lipid transfer and describe potential methods and systems to further test our theory.


  • Open Access

    Force redistribution in clathrin-mediated endocytosis revealed by coiled-coil force sensors

    by Yuan Ren, Jie Yang, Barbara Fujita, Huaizhou Jin, Yongli Zhang, Julien Berro

    Forces are central to countless cellular processes, yet in vivo force measurement at the molecular scale remains difficult if not impossible. During clathrin-mediated endocytosis, forces produced by the actin cytoskeleton are transmitted to the plasma membrane by a multiprotein coat for membrane deformation. However, the magnitudes of these forces remain unknown. Here, we present new in vivo force sensors that induce protein condensation under force. We measured the forces on the fission yeast Huntingtin-Interacting Protein 1 Related (HIP1R) homolog End4p, a protein that links the membrane to the actin cytoskeleton. End4p is under ~19-piconewton force near the actin cytoskeleton, ~11 piconewtons near the clathrin lattice, and ~9 piconewtons near the plasma membrane. Our results demonstrate that forces are collected and redistributed across the endocytic machinery.


  • Open Access

    Tomosyns attenuate SNARE assembly and synaptic depression by binding to VAMP2-containing template complexes

    by Marieke Meijer, Miriam Öttl, Jie Yang, Aygul Subkhangulova, Avinash Kumar, Alexander J. Groffen, Jan R.T. van Weering, Yongli Zhang, Matthijs Verhage

    Summary: Tomosyns are soluble SNARE proteins proposed to attenuate membrane fusion by competing with synaptobrevin-2/VAMP2 for SNARE-complex assembly. Here, we present evidence against this scenario using a novel mouse model, energy barrier recordings, and single-molecule force measurements. Tomosyn-1/2 deficiency drastically enhanced the probability that synaptic vesicles fuse at synapses, resulting in stronger synapses with faster depression and slower recovery. While wildtype tomosyn-1m rescued these phenotypes, substitution of its SNARE motif with that of synaptobrevin-2/VAMP2 did not. Force measurements revealed that tomosyn’s SNARE motif cannot substitute synaptobrevin-2/VAMP2 to form template complexes with Munc18-1 and syntaxin-1, an essential intermediate for SNARE assembly. Instead, tomosyns bind synaptobrevin-2/VAMP2-containing template complexes and prevent SNAP-25 association. Structure-function analyses indicate that regions outside the SNARE motif contribute to tomosyn’s inhibitory function. These results reveal that tomosyns regulate synaptic transmission by preventing SNAP-25 binding to template complexes, increasing the energy barrier for synaptic vesicle fusion, and limiting synaptic depression.