Alireza Iranbakhsh
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The organizations/institutes from the scholar's latest article
Research Subjects
Research Interests
Alireza Iranbakhsh has a total of 176 co-authors. Here are the top co-authors by number of shared publications:
Mostafa Ebadi
Department of Biology, Damghan Branch, Islamic Azad University
34 shared publicationsZahra Oraghi Ardebili
Department of Biology, Ga.C., Islamic Azad University, Garmsar, Iran
23 shared publications- Zahra Oraghi Ardebili
Department of Biology, Garmsar Branch, Islamic Azad University, Garmsar, Iran
20 shared publications Sara Saadatmand
Institute of Converging sciences and Technologies, SR.C., Islamic Azad University
10 shared publicationsAhmad Majd
Department of Biology, North Tehran Branch, Islamic Azad University, Tehran, Iran
7 shared publications- Mostafa Ebadi
Department of Biology, Damghan Branch, Islamic Azad University, Damghan, Iran
7 shared publications
Latest Publications
- 11 July 2026
- Published by Taylor & Francis in International Journal of Phytoremediation
- Vol. 28 (13) , 3398-3407
Synergistic effects of chitin and nitric oxide on phytochemical and molecular defense mechanisms in Andrographis paniculata under nickel stress
Nickel (Ni) toxicity, characterized by an excessive accumulation of this detrimental element in plants, can significantly hinder growth and reduce crop yields (Ghasemi et al. 2009). As one of the 2...
- 11 July 2026
- Published by Taylor & Francis in International Journal of Phytoremediation
- Vol. 28 (13) , 3398-3407
Synergistic effects of chitin and nitric oxide on phytochemical and molecular defense mechanisms in Andrographis paniculata under nickel stress
Nickel (Ni) toxicity, characterized by an excessive accumulation of this detrimental element in plants, can significantly hinder growth and reduce crop yields (Ghasemi et al. 2009). As one of the 2...
- 3 March 2026
- Published by Springer Nature in Journal of Plant Growth Regulation
- Vol. 45 (6) , 1-17
The Simulated Microgravity and Nitric Oxide were Accompanied by Epigenetic DNA Hypo-Methylation, Gene Regulation, Reinforced Antioxidant System, and Stimulated Phenylpropanoid Metabolism in Pepper (Capsicum annuum)
- 3 March 2026
- Published by Springer Nature in Journal of Plant Growth Regulation
- Vol. 45 (6) , 1-17
The Simulated Microgravity and Nitric Oxide were Accompanied by Epigenetic DNA Hypo-Methylation, Gene Regulation, Reinforced Antioxidant System, and Stimulated Phenylpropanoid Metabolism in Pepper (Capsicum annuum)
- Open Access
- 6 October 2025
- Published by Springer Nature in BMC Plant Biology
- Vol. 25 (1) , 1-12
Analysis of UV radiation-induced changes: effects on morpho-physiological, and biochemical traits of Portulaca Oleracea
Ultraviolet (UV) radiation is a significant environmental stressor for plant growth, stress responses and secondary metabolites. UV-B (280–315 nm) and UV-C (100–280 nm) wavelengths are particularly known to induce oxidative stress among the UV wavelenghts. The physiological and biochemical reactions of Portulaca oleracea with differing intensity of UV radiation are still uncertain. P. oleracea plants were exposed to UV-B and UV-C with measurements at 0, 200, 400 and 600 J.m⁻². Both UV-B and UV-C treatments reduced plant height, biomass, and leaf water potentially the largest reductions were under UV-C treatments in fact at 600 J.m⁻². Photosynthetic pigments such as chlorophyll a, chlorophyll b and carotenoids decreased with rising intensities of ultraviolet (UV). However, proline, malondialdehyde (MDA), phenols and flavonoids increased indicating more oxidative stress. Activities of the antioxidant enzymes catalase and peroxidase increased under increasing UV-C doses; the antioxidants increased with intense UV-C. Although UV-B and UV-C radiation produces physiological and biochemical effects that are dose-dependent in the greenhouse weed, P. oleracea, the exposure of plants to UV-C caused growth inhibition and decrease in pigments, but induced the defense mechanism against oxidative stress. Overall findings shed light on plant resilience to natural stress together mitigation measures for sustainable agro-ecosystem management amidst an increasing UV environment.
- 6 October 2025
- Published by Springer Nature in BMC Plant Biology
- Vol. 25 (1) , 1-12
Open AccessAnalysis of UV radiation-induced changes: effects on morpho-physiological, and biochemical traits of Portulaca Oleracea
Ultraviolet (UV) radiation is a significant environmental stressor for plant growth, stress responses and secondary metabolites. UV-B (280–315 nm) and UV-C (100–280 nm) wavelengths are particularly known to induce oxidative stress among the UV wavelenghts. The physiological and biochemical reactions of Portulaca oleracea with differing intensity of UV radiation are still uncertain. P. oleracea plants were exposed to UV-B and UV-C with measurements at 0, 200, 400 and 600 J.m⁻². Both UV-B and UV-C treatments reduced plant height, biomass, and leaf water potentially the largest reductions were under UV-C treatments in fact at 600 J.m⁻². Photosynthetic pigments such as chlorophyll a, chlorophyll b and carotenoids decreased with rising intensities of ultraviolet (UV). However, proline, malondialdehyde (MDA), phenols and flavonoids increased indicating more oxidative stress. Activities of the antioxidant enzymes catalase and peroxidase increased under increasing UV-C doses; the antioxidants increased with intense UV-C. Although UV-B and UV-C radiation produces physiological and biochemical effects that are dose-dependent in the greenhouse weed, P. oleracea, the exposure of plants to UV-C caused growth inhibition and decrease in pigments, but induced the defense mechanism against oxidative stress. Overall findings shed light on plant resilience to natural stress together mitigation measures for sustainable agro-ecosystem management amidst an increasing UV environment.
- Open Access
- 23 September 2025
- Published by University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca in Notulae Botanicae Horti Agrobotanici Cluj-Napoca
- Vol. 53 (3) , 14529
Transcriptome analysis of wheat (Triticum aestivum) reveals regulatory mechanisms of adaptation to water deficit stress induced by arbuscular mycorrhizal fungi
RNA sequencing (RNA-Seq) is a powerful tool for exploring transcriptional responses to environmental cues and elucidating gene regulatory networks. This study investigates how arbuscular mycorrhizal fungi (AMF) alleviate water deficit (WD) stress in Triticum aestivum seedlings through transcriptomic analysis. A comparative transcriptome analysis was performed on wheat roots under two irrigation regimes, well-watered (WW) and WD, and/or AMF inoculation, to identify differentially expressed genes (DEGs). AMF inoculation modulated the expression of genes involved in osmotic adjustment and protective metabolite biosynthesis. While genes such as P5CS, ARG, OAT, and TaPROT2 were downregulated in AMF-treated plants under WD, asparagine synthase (ASNS) was notably upregulated. Furthermore, AMF symbiosis enhanced the expression of genes related to polyamine and GABA metabolism under WD stress. A significant upregulation of antioxidant-related genes, particularly GSTU1, indicated an AMF-induced strengthening of the antioxidant defense system. Additionally, AMF treatment upregulated multiple nutrient transporter genes, including PHT, AMT, NPF, NRT, HAK/AKT, aquaporins, sugar transporters, and ABC transporters, thereby contributing to improved nutritional status. AMF also influenced carbohydrate metabolism to promote cell wall (CW) biosynthesis and remodelling, highlighting its role in structural adaptation to drought. These findings offer key molecular insights into the mechanisms by which AMF symbiosis modulates gene expression to improve wheat drought tolerance under varying irrigation conditions.
- 23 September 2025
- Published by University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca in Notulae Botanicae Horti Agrobotanici Cluj-Napoca
- Vol. 53 (3) , 14529
Open AccessTranscriptome analysis of wheat (Triticum aestivum) reveals regulatory mechanisms of adaptation to water deficit stress induced by arbuscular mycorrhizal fungi
RNA sequencing (RNA-Seq) is a powerful tool for exploring transcriptional responses to environmental cues and elucidating gene regulatory networks. This study investigates how arbuscular mycorrhizal fungi (AMF) alleviate water deficit (WD) stress in Triticum aestivum seedlings through transcriptomic analysis. A comparative transcriptome analysis was performed on wheat roots under two irrigation regimes, well-watered (WW) and WD, and/or AMF inoculation, to identify differentially expressed genes (DEGs). AMF inoculation modulated the expression of genes involved in osmotic adjustment and protective metabolite biosynthesis. While genes such as P5CS, ARG, OAT, and TaPROT2 were downregulated in AMF-treated plants under WD, asparagine synthase (ASNS) was notably upregulated. Furthermore, AMF symbiosis enhanced the expression of genes related to polyamine and GABA metabolism under WD stress. A significant upregulation of antioxidant-related genes, particularly GSTU1, indicated an AMF-induced strengthening of the antioxidant defense system. Additionally, AMF treatment upregulated multiple nutrient transporter genes, including PHT, AMT, NPF, NRT, HAK/AKT, aquaporins, sugar transporters, and ABC transporters, thereby contributing to improved nutritional status. AMF also influenced carbohydrate metabolism to promote cell wall (CW) biosynthesis and remodelling, highlighting its role in structural adaptation to drought. These findings offer key molecular insights into the mechanisms by which AMF symbiosis modulates gene expression to improve wheat drought tolerance under varying irrigation conditions.
- 8 July 2025
- Published by Springer Nature in Protoplasma
- Vol. 263 (1) , 105-117
Exploring effectiveness of salicylic acid and methyl jasmonate elicitors in influencing growth performance, epigenetic regulation, gene transcription, and secondary metabolism in pepper (Capsicum annuum): an in vitro biological assessment
Epigenetic responses of in vitro-cultured plants to elicitation with salicylic acid (SA) and methyl jasmonate (MJ) have been little explored. This study addresses how pepper seedlings respond to incorporating SA (0 and 10 µM) and/or MJ (0 and 10 µM) into the culture medium at physiological and molecular levels. The individual application of MJ or SA enhanced root fresh weight by an average of 59.8%. However, the mixed treatment synergistically augmented the root biomass by 2.2-fold. SA was individually more effective than MJ in triggering changes in the DNA methylome profiles. The epigenetic cytosine methylation in the MJ + SA group differed from that of the individual treatments. The individual SA treatment led to severe DNA hypermethylation, which was modified with the MJ application. Moreover, MJ and/or SA-mediated upregulation of the histone deacetylase (HDA) gene also confirmed the epigenetic regulation at the histone modification level. The MJ elicitor showed greater effectiveness in influencing the transcription of the target genes than the SA one. The expression of the MAPK kinase and ethylene-responsive transcription factor (EREB) genes displayed a similar upward trend. Applying pepper seedlings with MJ and SA increased proline concentrations and catalase activities. The simultaneous application of MJ and SA supplements effectively stimulated secondary metabolism, indicated by increased soluble phenols and activity of the phenylalanine ammonia-lyase enzyme. This study presents novel comparative insights into the SA and MJ-mediated epigenetic modifications. These findings can be employed to design in vitro culture systems and implement large-scale projects.
- 8 July 2025
- Published by Springer Nature in Protoplasma
- Vol. 263 (1) , 105-117
Exploring effectiveness of salicylic acid and methyl jasmonate elicitors in influencing growth performance, epigenetic regulation, gene transcription, and secondary metabolism in pepper (Capsicum annuum): an in vitro biological assessment
Epigenetic responses of in vitro-cultured plants to elicitation with salicylic acid (SA) and methyl jasmonate (MJ) have been little explored. This study addresses how pepper seedlings respond to incorporating SA (0 and 10 µM) and/or MJ (0 and 10 µM) into the culture medium at physiological and molecular levels. The individual application of MJ or SA enhanced root fresh weight by an average of 59.8%. However, the mixed treatment synergistically augmented the root biomass by 2.2-fold. SA was individually more effective than MJ in triggering changes in the DNA methylome profiles. The epigenetic cytosine methylation in the MJ + SA group differed from that of the individual treatments. The individual SA treatment led to severe DNA hypermethylation, which was modified with the MJ application. Moreover, MJ and/or SA-mediated upregulation of the histone deacetylase (HDA) gene also confirmed the epigenetic regulation at the histone modification level. The MJ elicitor showed greater effectiveness in influencing the transcription of the target genes than the SA one. The expression of the MAPK kinase and ethylene-responsive transcription factor (EREB) genes displayed a similar upward trend. Applying pepper seedlings with MJ and SA increased proline concentrations and catalase activities. The simultaneous application of MJ and SA supplements effectively stimulated secondary metabolism, indicated by increased soluble phenols and activity of the phenylalanine ammonia-lyase enzyme. This study presents novel comparative insights into the SA and MJ-mediated epigenetic modifications. These findings can be employed to design in vitro culture systems and implement large-scale projects.
- 22 February 2025
- Published by Elsevier in Environmental Pollution
- Vol. 370, 125907
Selenium nanoparticles affected growth and secondary metabolism in chicory seedlings epigenetically by modifying DNA methylation and transcriptionally by upregulating DREB1A transcription factor and stimulating genes involved in phenylpropanoid metabolism
- 22 February 2025
- Published by Elsevier in Environmental Pollution
- Vol. 370, 125907
Selenium nanoparticles affected growth and secondary metabolism in chicory seedlings epigenetically by modifying DNA methylation and transcriptionally by upregulating DREB1A transcription factor and stimulating genes involved in phenylpropanoid metabolism
- 17 January 2025
- Published by Elsevier in Plant Physiology and Biochemistry
- Vol. 220, 109523
Polyethylene nanoplastics affected morphological, physiological, and molecular indices in tomato (Solanum lycopersicum L.)
- 17 January 2025
- Published by Elsevier in Plant Physiology and Biochemistry
- Vol. 220, 109523
Polyethylene nanoplastics affected morphological, physiological, and molecular indices in tomato (Solanum lycopersicum L.)
- Open Access
- 23 October 2024
- Published by Firenze University Press in Advances in Horticultural Science
- Vol. 38 (3) , 249-256
Effects of foliar application of two forms of selenium on anatomic features of Thymus daenensis Celak
To investigate selenium effects on anatomic features of Thymus daenensis, three concentrations of bulk and nanoparticles of the element (2, 4 and 8 ppm) along with distilled water, as a control, were sprayed on foliar of young seedlings of the plant species for six times with 2 weeks intervals. Transverse sections of stems, roots and leaves of the treated plants were manually produced and stained by Carmine and Methylene blue. Average of 5 readings was recorded for each treatment on several anatomic traits. Statistical analysis of the data revealed that the effects of selenium treatments were significantly different, at 1% of probability, on all of the studied anatomic characters. The first level of nanoparticles showed the most positive effects on several root characteristics. The highest level of selenium nanoparticles (8 ppm) showed the most positive effects on stem diameter and stem vascular cylinder diameter. The last two levels of nanoparticles had similar and the largest effect on stem epidermis thickness. The lowest level of bulk selenium (2 ppm) showed the most increment on leaf characteristics. Application of a low concentration of selenium by foliar spraying on young plants of the species is suggested for more vegetative growth and higher photosynthetic efficiency
- 23 October 2024
- Published by Firenze University Press in Advances in Horticultural Science
- Vol. 38 (3) , 249-256
Open AccessEffects of foliar application of two forms of selenium on anatomic features of Thymus daenensis Celak
To investigate selenium effects on anatomic features of Thymus daenensis, three concentrations of bulk and nanoparticles of the element (2, 4 and 8 ppm) along with distilled water, as a control, were sprayed on foliar of young seedlings of the plant species for six times with 2 weeks intervals. Transverse sections of stems, roots and leaves of the treated plants were manually produced and stained by Carmine and Methylene blue. Average of 5 readings was recorded for each treatment on several anatomic traits. Statistical analysis of the data revealed that the effects of selenium treatments were significantly different, at 1% of probability, on all of the studied anatomic characters. The first level of nanoparticles showed the most positive effects on several root characteristics. The highest level of selenium nanoparticles (8 ppm) showed the most positive effects on stem diameter and stem vascular cylinder diameter. The last two levels of nanoparticles had similar and the largest effect on stem epidermis thickness. The lowest level of bulk selenium (2 ppm) showed the most increment on leaf characteristics. Application of a low concentration of selenium by foliar spraying on young plants of the species is suggested for more vegetative growth and higher photosynthetic efficiency
- Open Access
- 6 October 2024
- Published by Brieflands in Journal of Microbiota
- Vol. 1 (3)
Effects of Bacteriocin Extracted from Lactobacillus plantarum on Treatment-Resistant Escherichia coli Bacteria Isolated from Humans and Livestock
Background: Lactic acid bacteria (LAB) are among the most common probiotics and play a significant role in promoting health within the human intestinal microbiota. Their protective functions in the intestine include producing antimicrobial compounds, regulating the balance of the intestinal microbiome, and more. Objectives: This study aims to investigate the antimicrobial effects of bacteriocin extracted from Lactobacillus plantarum (L. plantarum) on Escherichia coli (E. coli) strains that cause treatment-resistant urinary tract infections (UTIs) in humans and mastitis in livestock. Methods: Twenty E. coli isolates were obtained from patients with UTIs and cows with mastitis. After culturing the samples on Eosin-methylene blue, McConkey agar, and blood agar, the strains were identified using biochemical tests. Bacteriocin produced by L. plantarum ATCC8014 was extracted, and its concentration was measured using the Bradford method. The antimicrobial effect of the bacteriocin was assessed using the broth microdilution method to determine the minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC). Additionally, the bacteriocin's antimicrobial activity was evaluated through three repetitions of disk diffusion and agar well diffusion methods. Results: The findings revealed that the MIC and MBC concentrations for all human and animal strains were 13.38 μg/mL and 26.76 μg/mL, respectively. Notably, two animal samples (No. 3 and No. 10) and one human sample (No. 6) showed lower MIC and MBC concentrations compared to the other samples and the standard E. coli sample. However, all strains were resistant to bacteriocin in the disk diffusion and agar well diffusion methods. Conclusions: The data indicate a high risk of increasing treatment-resistant E. coli strains in UTIs and livestock, which could pose a significant threat to public and animal health. Therefore, it is essential to further investigate the effects of different bacteriocins on these resistant strains, in conjunction with antibiotic therapies.
- 6 October 2024
- Published by Brieflands in Journal of Microbiota
- Vol. 1 (3)
Open AccessEffects of Bacteriocin Extracted from Lactobacillus plantarum on Treatment-Resistant Escherichia coli Bacteria Isolated from Humans and Livestock
Background: Lactic acid bacteria (LAB) are among the most common probiotics and play a significant role in promoting health within the human intestinal microbiota. Their protective functions in the intestine include producing antimicrobial compounds, regulating the balance of the intestinal microbiome, and more. Objectives: This study aims to investigate the antimicrobial effects of bacteriocin extracted from Lactobacillus plantarum (L. plantarum) on Escherichia coli (E. coli) strains that cause treatment-resistant urinary tract infections (UTIs) in humans and mastitis in livestock. Methods: Twenty E. coli isolates were obtained from patients with UTIs and cows with mastitis. After culturing the samples on Eosin-methylene blue, McConkey agar, and blood agar, the strains were identified using biochemical tests. Bacteriocin produced by L. plantarum ATCC8014 was extracted, and its concentration was measured using the Bradford method. The antimicrobial effect of the bacteriocin was assessed using the broth microdilution method to determine the minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC). Additionally, the bacteriocin's antimicrobial activity was evaluated through three repetitions of disk diffusion and agar well diffusion methods. Results: The findings revealed that the MIC and MBC concentrations for all human and animal strains were 13.38 μg/mL and 26.76 μg/mL, respectively. Notably, two animal samples (No. 3 and No. 10) and one human sample (No. 6) showed lower MIC and MBC concentrations compared to the other samples and the standard E. coli sample. However, all strains were resistant to bacteriocin in the disk diffusion and agar well diffusion methods. Conclusions: The data indicate a high risk of increasing treatment-resistant E. coli strains in UTIs and livestock, which could pose a significant threat to public and animal health. Therefore, it is essential to further investigate the effects of different bacteriocins on these resistant strains, in conjunction with antibiotic therapies.
- 7 September 2024
- Published by Elsevier in Environmental Pollution
- Vol. 362, 124917
Nitric oxide and ascorbic acid confer cadmium (Cd) tolerance by improving plant terpenoid metabolism and epigenetically modifying DNA methylation
- 7 September 2024
- Published by Elsevier in Environmental Pollution
- Vol. 362, 124917
Nitric oxide and ascorbic acid confer cadmium (Cd) tolerance by improving plant terpenoid metabolism and epigenetically modifying DNA methylation