Pavel Novak
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Pavel Novak has a total of 205 co-authors. Here are the top co-authors by number of shared publications:
- Yuri E. Korchev
Imperial College London, London, United Kingdom
23 shared publications - David Klenerman
University of Cambridge
18 shared publications - Julia Gorelik
National Heart and Lung Institute, Imperial College London, Hammersmith Campus, Du Cane Road, London W12 0NN, UK
18 shared publications Yasufumi Takahashi
Advanced Institute for Materials Research, Tohoku University, Sendai 980-8577, Japan
7 shared publicationsAndrew I Shevchuk
Department of Medicine, Imperial College London , London W12 0NN, United Kingdom
6 shared publicationsBabak Babakinejad
Department of Medicine, London W12 0NN, United Kingdom
6 shared publications
Latest Publications
- Open Access
- 28 October 2024
- Published by Optica Publishing Group in Biomedical Optics Express
- Vol. 15 (11) , 6573-6587
Widefield optical coherence tomography by electro-optical modulation
Optical coherence tomography (OCT) is a unique imaging modality capable of axial sectioning with a resolution of only a few microns. Its ability to image with high resolution deep within tissue makes it ideal for material inspection, dentistry, and, in particular, ophthalmology. Widefield retinal imaging has garnered increasing clinical interest for the detection of numerous retinal diseases. However, real-time applications in clinical practice demand the contrast of swept-source OCT at scan speeds that limit their depth range. The curvature of typical samples, such as teeth, corneas, or retinas, thus restricts the field-of-view of fast OCT systems. Novel high-speed swept sources are expected to further improve the scan rate; however, not without exacerbating the already severe trade-off in depth range. Here, we show how, without the need for mechanical repositioning, harmonic images can be rapidly synthesized at any depth. This is achieved by opto-electronic modulation of a single-frequency swept source laser in tandem with tailored numerical dispersion compensation. We demonstrate experimentally how real-time imaging of highly-curved samples is enabled by extending the effective depth-range 8-fold. Even at the scan speed of a 400 kHz swept source, harmonic OCT enables widefield retinal imaging.
- 28 October 2024
- Published by Optica Publishing Group in Biomedical Optics Express
- Vol. 15 (11) , 6573-6587
Open AccessWidefield optical coherence tomography by electro-optical modulation
Optical coherence tomography (OCT) is a unique imaging modality capable of axial sectioning with a resolution of only a few microns. Its ability to image with high resolution deep within tissue makes it ideal for material inspection, dentistry, and, in particular, ophthalmology. Widefield retinal imaging has garnered increasing clinical interest for the detection of numerous retinal diseases. However, real-time applications in clinical practice demand the contrast of swept-source OCT at scan speeds that limit their depth range. The curvature of typical samples, such as teeth, corneas, or retinas, thus restricts the field-of-view of fast OCT systems. Novel high-speed swept sources are expected to further improve the scan rate; however, not without exacerbating the already severe trade-off in depth range. Here, we show how, without the need for mechanical repositioning, harmonic images can be rapidly synthesized at any depth. This is achieved by opto-electronic modulation of a single-frequency swept source laser in tandem with tailored numerical dispersion compensation. We demonstrate experimentally how real-time imaging of highly-curved samples is enabled by extending the effective depth-range 8-fold. Even at the scan speed of a 400 kHz swept source, harmonic OCT enables widefield retinal imaging.
- Open Access
- 17 August 2022
- Published by Springer Nature in Nature Communications
- Vol. 13 (1) , 1-20
Intrinsic cell rheology drives junction maturation
A fundamental property of higher eukaryotes that underpins their evolutionary success is stable cell-cell cohesion. Yet, how intrinsic cell rheology and stiffness contributes to junction stabilization and maturation is poorly understood. We demonstrate that localized modulation of cell rheology governs the transition of a slack, undulated cell-cell contact (weak adhesion) to a mature, straight junction (optimal adhesion). Cell pairs confined on different geometries have heterogeneous elasticity maps and control their own intrinsic rheology co-ordinately. More compliant cell pairs grown on circles have slack contacts, while stiffer triangular cell pairs favour straight junctions with flanking contractile thin bundles. Counter-intuitively, straighter cell-cell contacts have reduced receptor density and less dynamic junctional actin, suggesting an unusual adaptive mechano-response to stabilize cell-cell adhesion. Our modelling informs that slack junctions arise from failure of circular cell pairs to increase their own intrinsic stiffness and resist the pressures from the neighbouring cell. The inability to form a straight junction can be reversed by increasing mechanical stress artificially on stiffer substrates. Our data inform on the minimal intrinsic rheology to generate a mature junction and provide a springboard towards understanding elements governing tissue-level mechanics.
- 17 August 2022
- Published by Springer Nature in Nature Communications
- Vol. 13 (1) , 1-20
Open AccessIntrinsic cell rheology drives junction maturation
A fundamental property of higher eukaryotes that underpins their evolutionary success is stable cell-cell cohesion. Yet, how intrinsic cell rheology and stiffness contributes to junction stabilization and maturation is poorly understood. We demonstrate that localized modulation of cell rheology governs the transition of a slack, undulated cell-cell contact (weak adhesion) to a mature, straight junction (optimal adhesion). Cell pairs confined on different geometries have heterogeneous elasticity maps and control their own intrinsic rheology co-ordinately. More compliant cell pairs grown on circles have slack contacts, while stiffer triangular cell pairs favour straight junctions with flanking contractile thin bundles. Counter-intuitively, straighter cell-cell contacts have reduced receptor density and less dynamic junctional actin, suggesting an unusual adaptive mechano-response to stabilize cell-cell adhesion. Our modelling informs that slack junctions arise from failure of circular cell pairs to increase their own intrinsic stiffness and resist the pressures from the neighbouring cell. The inability to form a straight junction can be reversed by increasing mechanical stress artificially on stiffer substrates. Our data inform on the minimal intrinsic rheology to generate a mature junction and provide a springboard towards understanding elements governing tissue-level mechanics.
- Open Access
- 1 November 2021
- Published by Elsevier in Brain Stimulation
- Vol. 14 (6) , 1628
Parkinson’s disease treatment with shockwaves
- 1 November 2021
- Published by Elsevier in Brain Stimulation
- Vol. 14 (6) , 1628
Open AccessParkinson’s disease treatment with shockwaves
- Open Access
- 22 October 2020
- Published by Wiley in Journal of Microscopy
- Vol. 282 (1) , 21-29
Release of insulin granules by simultaneous, high‐speed correlative SICM‐FCM
Summary: Exocytosis of peptides and steroids stored in a dense core vesicular (DCV) form is the final step of every secretory pathway, indispensable for the function of nervous, endocrine and immune systems. The lack of live imaging techniques capable of direct, label‐free visualisation of DCV release makes many aspects of the exocytotic process inaccessible to investigation. We describe the application of correlative scanning ion conductance and fluorescence confocal microscopy (SICM‐FCM) to study the exocytosis of individual granules of insulin from the top, nonadherent, surface of pancreatic β‐cells. Using SICM‐FCM, we were first to directly follow the topographical changes associated with physiologically induced release of insulin DCVs. This allowed us to report the kinetics of the full fusion of the insulin vesicle as well as the subsequent solubilisation of the released insulin crystal.
- 22 October 2020
- Published by Wiley in Journal of Microscopy
- Vol. 282 (1) , 21-29
Open AccessRelease of insulin granules by simultaneous, high‐speed correlative SICM‐FCM
Summary: Exocytosis of peptides and steroids stored in a dense core vesicular (DCV) form is the final step of every secretory pathway, indispensable for the function of nervous, endocrine and immune systems. The lack of live imaging techniques capable of direct, label‐free visualisation of DCV release makes many aspects of the exocytotic process inaccessible to investigation. We describe the application of correlative scanning ion conductance and fluorescence confocal microscopy (SICM‐FCM) to study the exocytosis of individual granules of insulin from the top, nonadherent, surface of pancreatic β‐cells. Using SICM‐FCM, we were first to directly follow the topographical changes associated with physiologically induced release of insulin DCVs. This allowed us to report the kinetics of the full fusion of the insulin vesicle as well as the subsequent solubilisation of the released insulin crystal.
- Open Access
- 27 January 2020
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 117 (6) , 2764-2766
Microtubules regulate cardiomyocyte transversal Young’s modulus
The field of cardiomyocyte mechanobiology is gaining significant attention, due to accumulating evidence concerning the significant role of cellular mechanical effects on the integrated function of the heart. To date, the protein titin has been demonstrated as a major contributor to the cardiomyocytes Young’s modulus (YM). The microtubular network represents another potential regulator of cardiac mechanics. However, the contribution of microtubules (MTs) to the membrane YM is still understudied and has not been interrogated in the context of myocardial infarction (MI) or mechanical loading and unloading. Using nanoscale mechanoscanning ion conductance microscopy, we demonstrate that MTs contribute to cardiomyocyte transverse YM in healthy and pathological states with different mechanical loading. Specifically, we show that posttranslational modifications of MTs have differing effects on cardiomyocyte YM: Acetylation provides flexibility, whereas detyrosination imparts rigidity. Further studies demonstrate that there is no correlation between the total protein amount of acetylated and detyrosinated MT. Yet, in the polymerized-only populations, an increased level of acetylation results in a decline of detyrosinated MTs in an MI model.
- 27 January 2020
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 117 (6) , 2764-2766
Open AccessMicrotubules regulate cardiomyocyte transversal Young’s modulus
The field of cardiomyocyte mechanobiology is gaining significant attention, due to accumulating evidence concerning the significant role of cellular mechanical effects on the integrated function of the heart. To date, the protein titin has been demonstrated as a major contributor to the cardiomyocytes Young’s modulus (YM). The microtubular network represents another potential regulator of cardiac mechanics. However, the contribution of microtubules (MTs) to the membrane YM is still understudied and has not been interrogated in the context of myocardial infarction (MI) or mechanical loading and unloading. Using nanoscale mechanoscanning ion conductance microscopy, we demonstrate that MTs contribute to cardiomyocyte transverse YM in healthy and pathological states with different mechanical loading. Specifically, we show that posttranslational modifications of MTs have differing effects on cardiomyocyte YM: Acetylation provides flexibility, whereas detyrosination imparts rigidity. Further studies demonstrate that there is no correlation between the total protein amount of acetylated and detyrosinated MT. Yet, in the polymerized-only populations, an increased level of acetylation results in a decline of detyrosinated MTs in an MI model.
- Open Access
- 4 September 2018
- Published by American Chemical Society (ACS) in ACS Nano
- Vol. 12 (9) , 9206-9213
Stem Cell Expansion and Fate Decision on Liquid Substrates Are Regulated by Self-Assembled Nanosheets
The culture of adherent cells is overwhelmingly relying on the use of solid substrates to support cell adhesion. Indeed, it is typically thought that relatively strong bulk mechanical properties (bulk moduli in the range of kPa to GPa) are essential to promote cell adhesion and, in turn, regulate cell expansion and fate decision. In this report, we show that adherent stem cells such as mesenchymal stem cells and primary keratinocytes can be cultured at the surface of liquid substrates and that this phenomenon is mediated by the assembly of polymer nanosheets at the liquid–liquid interface. We use interfacial rheology to quantify this assembly and demonstrate the strong mechanical properties of such nanosheets. Importantly, we show that cell adhesion to such quasi-2D materials is mediated by the classical integrin/acto-myosin machinery, despite the absence of bulk mechanical properties of the underlying liquid substrate. Finally, we show that stem cell proliferation and fate decision are also regulated by the mechanical properties of these self-assembled protein nanosheets. Liquid substrates offer attractive features for the culture of adherent cells and stem cells, and the development of novel stem cell technologies, such as liquid–liquid systems, are particularly well-adapted to automated parallel processing and scale up.
- 4 September 2018
- Published by American Chemical Society (ACS) in ACS Nano
- Vol. 12 (9) , 9206-9213
Open AccessStem Cell Expansion and Fate Decision on Liquid Substrates Are Regulated by Self-Assembled Nanosheets
The culture of adherent cells is overwhelmingly relying on the use of solid substrates to support cell adhesion. Indeed, it is typically thought that relatively strong bulk mechanical properties (bulk moduli in the range of kPa to GPa) are essential to promote cell adhesion and, in turn, regulate cell expansion and fate decision. In this report, we show that adherent stem cells such as mesenchymal stem cells and primary keratinocytes can be cultured at the surface of liquid substrates and that this phenomenon is mediated by the assembly of polymer nanosheets at the liquid–liquid interface. We use interfacial rheology to quantify this assembly and demonstrate the strong mechanical properties of such nanosheets. Importantly, we show that cell adhesion to such quasi-2D materials is mediated by the classical integrin/acto-myosin machinery, despite the absence of bulk mechanical properties of the underlying liquid substrate. Finally, we show that stem cell proliferation and fate decision are also regulated by the mechanical properties of these self-assembled protein nanosheets. Liquid substrates offer attractive features for the culture of adherent cells and stem cells, and the development of novel stem cell technologies, such as liquid–liquid systems, are particularly well-adapted to automated parallel processing and scale up.
- Open Access
- 3 September 2018
- Published by Royal Society of Chemistry (RSC) in Nanoscale
- Vol. 10 (35) , 16902-16910
Visualising nanoscale restructuring of a cellular membrane triggered by polyelectrolyte microcapsules
Simultaneous time-lapse imaging of topography and elastic modulus of microcapsule internalisation reveals distinct nanoscale restructuring of membrane protrusions.
- 3 September 2018
- Published by Royal Society of Chemistry (RSC) in Nanoscale
- Vol. 10 (35) , 16902-16910
Open AccessVisualising nanoscale restructuring of a cellular membrane triggered by polyelectrolyte microcapsules
Simultaneous time-lapse imaging of topography and elastic modulus of microcapsule internalisation reveals distinct nanoscale restructuring of membrane protrusions.
- Open Access
- 5 February 2018
- Published by American Chemical Society (ACS) in Analytical Chemistry
- Vol. 90 (4) , 2891-2895
Nanoscale Imaging of Primary Cilia with Scanning Ion Conductance Microscopy
Primary cilia are hair-like sensory organelles whose dimensions and location vary with cell type and culture condition. Herein, we employed scanning ion conductance microscopy (SICM) to visualize the topography of primary cilia from different cell types. By combining SICM with fluorescence imaging, we successfully distinguished between surface cilia that project outward from the cell surface and subsurface cilia that are trapped below it. The nanoscale structure of the ciliary pocket, which cannot be easily identified using a confocal fluorescence microscope, was observed in SICM images. Furthermore, we developed a topographic reconstruction method using current-distance profiles to evaluate the relationship between set point and topographic image and found that a low set point is important for detecting the true topography of a primary cilium using hopping mode SICM.
- 5 February 2018
- Published by American Chemical Society (ACS) in Analytical Chemistry
- Vol. 90 (4) , 2891-2895
Open AccessNanoscale Imaging of Primary Cilia with Scanning Ion Conductance Microscopy
Primary cilia are hair-like sensory organelles whose dimensions and location vary with cell type and culture condition. Herein, we employed scanning ion conductance microscopy (SICM) to visualize the topography of primary cilia from different cell types. By combining SICM with fluorescence imaging, we successfully distinguished between surface cilia that project outward from the cell surface and subsurface cilia that are trapped below it. The nanoscale structure of the ciliary pocket, which cannot be easily identified using a confocal fluorescence microscope, was observed in SICM images. Furthermore, we developed a topographic reconstruction method using current-distance profiles to evaluate the relationship between set point and topographic image and found that a low set point is important for detecting the true topography of a primary cilium using hopping mode SICM.
- 20 September 2017
- Published by Forum Multimedia Publishing LLC
- Vol. 34, 128-141
Chondrocyte expansion is associated with loss of primary cilia and disrupted hedgehog signalling
Tissue engineering-based therapies targeting cartilage diseases, such as osteoarthritis, require in vitro expansion of articular chondrocytes. A major obstacle for these therapies is the dedifferentiation and loss of phenotype accompanying chondrocyte expansion. Recent studies suggest that manipulation of hedgehog signalling may be used to promote chondrocyte re-differentiation. Hedgehog signalling requires the primary cilium, a microtubule-based signalling compartment, the integrity of which is linked to the cytoskeleton. We tested the hypothesis that alterations in cilia expression occurred as consequence of chondrocyte dedifferentiation and influenced hedgehog responsiveness. In vitro chondrocyte expansion to passage 5 (P5) was associated with increased actin stress fibre formation, dedifferentiation and progressive loss of primary cilia, compared to primary (P0) cells. P5 chondrocytes exhibited ~50 % fewer cilia with a reduced mean length. Cilia loss was associated with disruption of ligand-induced hedgehog signalling, such that P5 chondrocytes did not significantly regulate the expression of hedgehog target genes (GLI1 and PTCH1). This phenomenon could be recapitulated by applying 24 h cyclic tensile strain, which reduced cilia prevalence and length in P0 cells. LiCl treatment rescued cilia loss in P5 cells, partially restoring hedgehog signalling, so that GLI1 expression was significantly increased by Indian hedgehog. This study demonstrated that monolayer expansion disrupted primary cilia structure and hedgehog signalling associated with chondrocyte dedifferentiation. This excluded the possibility to use hedgehog ligands to stimulate re-differentiation without first restoring cilia expression. Furthermore, primary cilia loss during chondrocyte expansion would likely impact other cilia pathways important for cartilage health and tissue engineering, including transforming growth factor (TGF), Wnt and mechanosignalling.
- 20 September 2017
- Published by Forum Multimedia Publishing LLC
- Vol. 34, 128-141
Chondrocyte expansion is associated with loss of primary cilia and disrupted hedgehog signalling
Tissue engineering-based therapies targeting cartilage diseases, such as osteoarthritis, require in vitro expansion of articular chondrocytes. A major obstacle for these therapies is the dedifferentiation and loss of phenotype accompanying chondrocyte expansion. Recent studies suggest that manipulation of hedgehog signalling may be used to promote chondrocyte re-differentiation. Hedgehog signalling requires the primary cilium, a microtubule-based signalling compartment, the integrity of which is linked to the cytoskeleton. We tested the hypothesis that alterations in cilia expression occurred as consequence of chondrocyte dedifferentiation and influenced hedgehog responsiveness. In vitro chondrocyte expansion to passage 5 (P5) was associated with increased actin stress fibre formation, dedifferentiation and progressive loss of primary cilia, compared to primary (P0) cells. P5 chondrocytes exhibited ~50 % fewer cilia with a reduced mean length. Cilia loss was associated with disruption of ligand-induced hedgehog signalling, such that P5 chondrocytes did not significantly regulate the expression of hedgehog target genes (GLI1 and PTCH1). This phenomenon could be recapitulated by applying 24 h cyclic tensile strain, which reduced cilia prevalence and length in P0 cells. LiCl treatment rescued cilia loss in P5 cells, partially restoring hedgehog signalling, so that GLI1 expression was significantly increased by Indian hedgehog. This study demonstrated that monolayer expansion disrupted primary cilia structure and hedgehog signalling associated with chondrocyte dedifferentiation. This excluded the possibility to use hedgehog ligands to stimulate re-differentiation without first restoring cilia expression. Furthermore, primary cilia loss during chondrocyte expansion would likely impact other cilia pathways important for cartilage health and tissue engineering, including transforming growth factor (TGF), Wnt and mechanosignalling.
- 13 February 2017
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 114 (9) , 2395-2400
Kv1.1 channelopathy abolishes presynaptic spike width modulation by subthreshold somatic depolarization
Significance: Synaptic transmission depends on all-or-none action potentials. However, subthreshold membrane potential fluctuations at the cell body spread passively along the axon and affect the shape of presynaptic action potentials, calcium influx, and neurotransmitter release. Here we apply a superresolution method to identify small presynaptic terminals for patch clamp. Subthreshold modulation of action potentials is abolished by a mutation in the potassium channel Kv1.1 associated with the neurological channelopathy episodic ataxia type 1. Surprisingly, pharmacological or genetic ablation of Kv1.1 fails to prevent subthreshold modulation. Kv1.1 deletion and mutation have distinct effects on the composition and voltage sensitivity of presynaptic channels and consequently on modulation of neurotransmitter release.
- 13 February 2017
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 114 (9) , 2395-2400
Kv1.1 channelopathy abolishes presynaptic spike width modulation by subthreshold somatic depolarization
Significance: Synaptic transmission depends on all-or-none action potentials. However, subthreshold membrane potential fluctuations at the cell body spread passively along the axon and affect the shape of presynaptic action potentials, calcium influx, and neurotransmitter release. Here we apply a superresolution method to identify small presynaptic terminals for patch clamp. Subthreshold modulation of action potentials is abolished by a mutation in the potassium channel Kv1.1 associated with the neurological channelopathy episodic ataxia type 1. Surprisingly, pharmacological or genetic ablation of Kv1.1 fails to prevent subthreshold modulation. Kv1.1 deletion and mutation have distinct effects on the composition and voltage sensitivity of presynaptic channels and consequently on modulation of neurotransmitter release.