Simon Mendez
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Simon Mendez has a total of 187 co-authors. Here are the top co-authors by number of shared publications:
- Franck Nicoud
IMAG, University of Montpellier, CNRS Montpellier France
37 shared publications - Damien Garcia
INSA-Lyon, Université Claude Bernard Lyon 1, CNRS, Inserm, CREATIS UMR 5220, U1294, Lyon, France
7 shared publications - Manouk Abkarian
Centre de Biochimie Structurale, CNRS UMR 5048-INSERM UMR 1054, University of Montpellier, 34090 Montpellier, France
7 shared publications Franck Nicoud
6 shared publications- Howard A. Stone
Department of Mechanical and Aerospace Engineering, Princeton University, Princeton, NJ 08544 USA
5 shared publications - Alexandre Nicolas
Université Claude Bernard Lyon 1
4 shared publications
Latest Publications
- Open Access
- 12 November 2026
- Published by Elsevier in Blood Red Cells & Iron
Impedance Signals Reveal Red Blood Cell Deformability: Comparison with Ektacytometry
- 12 November 2026
- Published by Elsevier in Blood Red Cells & Iron
Open AccessImpedance Signals Reveal Red Blood Cell Deformability: Comparison with Ektacytometry
- Open Access
- 13 October 2026
- Published by Wiley in International Journal for Numerical Methods in Biomedical Engineering
- Vol. 42 (10) , e70218
Effect of the Mitral Valve on the Intra Ventricular Hemodynamics
To evaluate the impact of intracardiac flow features on the efficiency of the transfer of the myocardium's contractile mechanical power into blood flow hydraulic power. A time evolving 3D mesh corresponding to a patient‐specific left heart was generated from medical images to obtain the intracardiac hemodynamics via computational fluid dynamics. A parametric model of the mitral valve is used to investigate the influence of its opening area and orientation on the hemodynamics. The complete ventricular kinetic energy balance equation is established, and its terms are quantified to characterize the fraction of contractile power transferred to the blood flow. The simulations indicate that the influence of MV on blood flow pattern and vortices is significant. Dissipation and TKE in the left ventricle have a strong dependence on the MV model. Their values are higher when mimicking pathologies such as calcification of the MV (resulting in a smaller opening area), and reduced when the opening area is larger. While the orientation of the MV opening exerts a considerable impact on flow patterns, its effect on dissipation and TKE is less pronounced. For all the cases considered, the amount of energy dissipated over one cardiac cycle is a small fraction (1%–2%) of the energy at play to pump blood towards the aorta. In absence of valve leakage, the energy dissipated by viscous effect is marginal in all the healthy and pathological cases considered.
- 13 October 2026
- Published by Wiley in International Journal for Numerical Methods in Biomedical Engineering
- Vol. 42 (10) , e70218
Open AccessEffect of the Mitral Valve on the Intra Ventricular Hemodynamics
To evaluate the impact of intracardiac flow features on the efficiency of the transfer of the myocardium's contractile mechanical power into blood flow hydraulic power. A time evolving 3D mesh corresponding to a patient‐specific left heart was generated from medical images to obtain the intracardiac hemodynamics via computational fluid dynamics. A parametric model of the mitral valve is used to investigate the influence of its opening area and orientation on the hemodynamics. The complete ventricular kinetic energy balance equation is established, and its terms are quantified to characterize the fraction of contractile power transferred to the blood flow. The simulations indicate that the influence of MV on blood flow pattern and vortices is significant. Dissipation and TKE in the left ventricle have a strong dependence on the MV model. Their values are higher when mimicking pathologies such as calcification of the MV (resulting in a smaller opening area), and reduced when the opening area is larger. While the orientation of the MV opening exerts a considerable impact on flow patterns, its effect on dissipation and TKE is less pronounced. For all the cases considered, the amount of energy dissipated over one cardiac cycle is a small fraction (1%–2%) of the energy at play to pump blood towards the aorta. In absence of valve leakage, the energy dissipated by viscous effect is marginal in all the healthy and pathological cases considered.
- 16 June 2026
- Published by American Physical Society (APS) in Physical Review Fluids
- Vol. 11 (8)
Enucleated incompressible red blood cells in shear flow: Theoretical analysis of shape instabilities
- 16 June 2026
- Published by American Physical Society (APS) in Physical Review Fluids
- Vol. 11 (8)
Enucleated incompressible red blood cells in shear flow: Theoretical analysis of shape instabilities
- Open Access
- 22 February 2026
- Published by Wiley in Magnetic Resonance in Medicine
- Vol. 95 (6) , 3462-3475
Impact of Partial Echo on 4D Flow MRI: The Insight From Synthetic MRI
Purpose: The aim of this study is to investigate the impact of the partial echo on 4D flow MRI sequences thanks to in silico coupled MRI‐CFD (computational fluid dynamics) simulations. Methods: Two sequences are studied: one with a full echo (FE) and another using partial echo (PE) with an echo symmetry fraction of 0.75. MRI‐CFD simulations are conducted on an in silico pulsatile flow phantom for a sinusoidal inflow and a physiological inflow typical of the ascending aorta. Results: For both inflow signals, PE‐based simulations exhibited better compliance with their matching CFD simulations compared to the FE ones. Conclusion: The reduction of flow misregistration artifacts achieved through the use of PE appears to be more beneficial than the drawback of incomplete k‐space filling. The MRI‐CFD framework presented in this study appears as a useful tool to investigate the design of MRI sequences and to stratify its different sources of errors.
- 22 February 2026
- Published by Wiley in Magnetic Resonance in Medicine
- Vol. 95 (6) , 3462-3475
Open AccessImpact of Partial Echo on 4D Flow MRI: The Insight From Synthetic MRI
Purpose: The aim of this study is to investigate the impact of the partial echo on 4D flow MRI sequences thanks to in silico coupled MRI‐CFD (computational fluid dynamics) simulations. Methods: Two sequences are studied: one with a full echo (FE) and another using partial echo (PE) with an echo symmetry fraction of 0.75. MRI‐CFD simulations are conducted on an in silico pulsatile flow phantom for a sinusoidal inflow and a physiological inflow typical of the ascending aorta. Results: For both inflow signals, PE‐based simulations exhibited better compliance with their matching CFD simulations compared to the FE ones. Conclusion: The reduction of flow misregistration artifacts achieved through the use of PE appears to be more beneficial than the drawback of incomplete k‐space filling. The MRI‐CFD framework presented in this study appears as a useful tool to investigate the design of MRI sequences and to stratify its different sources of errors.
- Open Access
- 3 November 2025
- Published by Cambridge University Press (CUP) in Flow
- Vol. 5
How a table modulates the risk of airborne transmission between facing individuals
Airborne transmission has been recognised as an important route of transmission for SARS-CoV-2, the virus responsible for the COVID-19 pandemic. While coughing and sneezing are major aerosol sources, asymptomatic transmission highlights the need to study other exhalation modes in social settings. Gathering around a table, a common scenario for human interactions, may influence airborne transmission by modifying the airflows. Here, we employ high-fidelity large-eddy simulations to investigate the effect of a table for periodic breathing conditions (Reynolds number $Re\approx 10^3$ – $3\times 10^3$ , Froude number $Fr\approx 17$ – $50$ ) as well as during sudden, forceful exhalations at peak values of $Re\approx 1.2\times 10^4$ and $Fr\approx 70$ , mimicking laughter. During downward exhalations, the distance between the source and the table defines a new length scale that constrains the natural spread of buoyant puffs and jets. The table limits forward particle transport but, in doing so, may increase particle concentrations reaching a recipient, raising transmission risks. Simulations of forceful exhalations, such as laughter, further show that the table acts as an inertial filter – intercepting medium-sized particles that would otherwise remain airborne. This introduces a cutoff size dependent on puff inertia, altering the resulting airborne particle size distribution.- 3 November 2025
- Published by Cambridge University Press (CUP) in Flow
- Vol. 5
Open AccessHow a table modulates the risk of airborne transmission between facing individuals
Airborne transmission has been recognised as an important route of transmission for SARS-CoV-2, the virus responsible for the COVID-19 pandemic. While coughing and sneezing are major aerosol sources, asymptomatic transmission highlights the need to study other exhalation modes in social settings. Gathering around a table, a common scenario for human interactions, may influence airborne transmission by modifying the airflows. Here, we employ high-fidelity large-eddy simulations to investigate the effect of a table for periodic breathing conditions (Reynolds number $Re\approx 10^3$ – $3\times 10^3$ , Froude number $Fr\approx 17$ – $50$ ) as well as during sudden, forceful exhalations at peak values of $Re\approx 1.2\times 10^4$ and $Fr\approx 70$ , mimicking laughter. During downward exhalations, the distance between the source and the table defines a new length scale that constrains the natural spread of buoyant puffs and jets. The table limits forward particle transport but, in doing so, may increase particle concentrations reaching a recipient, raising transmission risks. Simulations of forceful exhalations, such as laughter, further show that the table acts as an inertial filter – intercepting medium-sized particles that would otherwise remain airborne. This introduces a cutoff size dependent on puff inertia, altering the resulting airborne particle size distribution. - Open Access
- 10 March 2025
- Published by Elsevier in Journal of Computational Physics
- Vol. 530
A discrete de Rham discretization of interface diffusion problems with application to the Leaky Dielectric Model
- 10 March 2025
- Published by Elsevier in Journal of Computational Physics
- Vol. 530
Open AccessA discrete de Rham discretization of interface diffusion problems with application to the Leaky Dielectric Model
- Open Access
A discrete de Rham discretization of interface diffusion problems with application to the Leaky Dielectric Model
Motivated by the study of the electrodynamics of particles, we propose in this work an arbitrary-order discrete de Rham scheme for the treatment of elliptic problems with potential and flux jumps across a fixed interface. The scheme seamlessly supports general elements resulting from the cutting of a background mesh along the interface. Interface conditions are enforced weakly à la Nitsche. We provide a rigorous convergence of analysis of the scheme for a steady model problem and showcase an application to a physical problem inspired by the Leaky Dielectric Model.
Open AccessA discrete de Rham discretization of interface diffusion problems with application to the Leaky Dielectric Model
Motivated by the study of the electrodynamics of particles, we propose in this work an arbitrary-order discrete de Rham scheme for the treatment of elliptic problems with potential and flux jumps across a fixed interface. The scheme seamlessly supports general elements resulting from the cutting of a background mesh along the interface. Interface conditions are enforced weakly à la Nitsche. We provide a rigorous convergence of analysis of the scheme for a steady model problem and showcase an application to a physical problem inspired by the Leaky Dielectric Model.
- Open Access
A discrete de Rham discretization of interface diffusion problems with application to the Leaky Dielectric Model
Motivated by the study of the electrodynamics of particles, we propose in this work an arbitrary-order discrete de Rham scheme for the treatment of elliptic problems with potential and flux jumps across a fixed interface. The scheme seamlessly supports general elements resulting from the cutting of a background mesh along the interface. Interface conditions are enforced weakly à la Nitsche. We provide a rigorous convergence of analysis of the scheme for a steady model problem and showcase an application to a physical problem inspired by the Leaky Dielectric Model.
Open AccessA discrete de Rham discretization of interface diffusion problems with application to the Leaky Dielectric Model
Motivated by the study of the electrodynamics of particles, we propose in this work an arbitrary-order discrete de Rham scheme for the treatment of elliptic problems with potential and flux jumps across a fixed interface. The scheme seamlessly supports general elements resulting from the cutting of a background mesh along the interface. Interface conditions are enforced weakly à la Nitsche. We provide a rigorous convergence of analysis of the scheme for a steady model problem and showcase an application to a physical problem inspired by the Leaky Dielectric Model.
- Open Access
- 20 June 2024
- Published by Forschungszentrum Julich, Zentralbibliothek in Collective Dynamics
- Vol. 9, 1-10
Viral Transmission in Pedestrian Crowds: Coupling an Open-source Code Assessing the Risks of Airborne Contagion with Diverse Pedestrian Dynamics Models
We study viral transmission in crowds via the short-ranged airborne pathway using a purely model-based approach. Our goal is two-pronged. Firstly, we illustrate with a concrete and pedagogical case study how to estimate the risks of new viral infections by coupling pedestrian simulations with the transmission algorithm that we recently released as open-source code. The algorithm hinges on pre-computed viral concentration maps derived from computational fluid dynamics (CFD) simulations. Secondly, we investigate to what extent the transmission risk predictions depend on the pedestrian dynamics model in use. For the simple bidirectional flow under consideration, the predictions are found to be surprisingly stable across initial conditions and models, despite the different microscopic arrangements of the simulated crowd, as long as the crowd evolves in a qualitatively similarly way. On the other hand, when major changes are observed in the crowd's behaviour, notably whenever a jam occurs at the centre of the channel, the estimated risks surge drastically.
- 20 June 2024
- Published by Forschungszentrum Julich, Zentralbibliothek in Collective Dynamics
- Vol. 9, 1-10
Open AccessViral Transmission in Pedestrian Crowds: Coupling an Open-source Code Assessing the Risks of Airborne Contagion with Diverse Pedestrian Dynamics Models
We study viral transmission in crowds via the short-ranged airborne pathway using a purely model-based approach. Our goal is two-pronged. Firstly, we illustrate with a concrete and pedagogical case study how to estimate the risks of new viral infections by coupling pedestrian simulations with the transmission algorithm that we recently released as open-source code. The algorithm hinges on pre-computed viral concentration maps derived from computational fluid dynamics (CFD) simulations. Secondly, we investigate to what extent the transmission risk predictions depend on the pedestrian dynamics model in use. For the simple bidirectional flow under consideration, the predictions are found to be surprisingly stable across initial conditions and models, despite the different microscopic arrangements of the simulated crowd, as long as the crowd evolves in a qualitatively similarly way. On the other hand, when major changes are observed in the crowd's behaviour, notably whenever a jam occurs at the centre of the channel, the estimated risks surge drastically.
- 10 June 2024
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control
- Vol. 71 (11) , 1377-1388
Physics-Guided Neural Networks for Intraventricular Vector Flow Mapping
Intraventricular vector flow mapping ( i VFM) seeks to enhance and quantify color Doppler in cardiac imaging. In this study, we propose novel alternatives to the traditional i VFM optimization scheme by utilizing physics-informed neural networks (PINNs) and a physics-guided nnU-Net-based supervised approach. When evaluated on simulated color Doppler images derived from a patient-specific computational fluid dynamics model and in vivo Doppler acquisitions, both approaches demonstrate comparable reconstruction performance to the original i VFM algorithm. The efficiency of PINNs is boosted through dual-stage optimization and pre-optimized weights. On the other hand, the nnU-Net method excels in generalizability and real-time capabilities. Notably, nnU-Net shows superior robustness on sparse and truncated Doppler data while maintaining independence from explicit boundary conditions. Overall, our results highlight the effectiveness of these methods in reconstructing intraventricular vector blood flow. The study also suggests potential applications of PINNs in ultrafast color Doppler imaging and the incorporation of fluid dynamics equations to derive biomarkers for cardiovascular diseases based on blood flow
- 10 June 2024
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control
- Vol. 71 (11) , 1377-1388
Physics-Guided Neural Networks for Intraventricular Vector Flow Mapping
Intraventricular vector flow mapping ( i VFM) seeks to enhance and quantify color Doppler in cardiac imaging. In this study, we propose novel alternatives to the traditional i VFM optimization scheme by utilizing physics-informed neural networks (PINNs) and a physics-guided nnU-Net-based supervised approach. When evaluated on simulated color Doppler images derived from a patient-specific computational fluid dynamics model and in vivo Doppler acquisitions, both approaches demonstrate comparable reconstruction performance to the original i VFM algorithm. The efficiency of PINNs is boosted through dual-stage optimization and pre-optimized weights. On the other hand, the nnU-Net method excels in generalizability and real-time capabilities. Notably, nnU-Net shows superior robustness on sparse and truncated Doppler data while maintaining independence from explicit boundary conditions. Overall, our results highlight the effectiveness of these methods in reconstructing intraventricular vector blood flow. The study also suggests potential applications of PINNs in ultrafast color Doppler imaging and the incorporation of fluid dynamics equations to derive biomarkers for cardiovascular diseases based on blood flow