Jesús Pineda

Oceanic energy budgets and mixing parameterizations are largely framed around tidal forcing, reflecting the availability of long-term, global datasets for barotropic and baroclinic tides. In contrast, internal waves, particularly Internal Solitary Waves (ISWs), remain poorly represented in global energy frameworks, despite their recognized role in transferring energy across scales, driving localized mixing, and modulating stratification. This imbalance is not only conceptual but observational: the lack of consistent, global datasets has limited the integration of internal wave processes into large-scale circulation and climate-relevant ocean models.ISWs are nonlinear internal waves that propagate over long distances in stratified oceans, linking mesoscale and large-scale forcing to small-scale turbulence. Beyond their surface expressions observable from space, ISWs involve strong internal currents and large vertical displacements of isopycnals, with implications for offshore operations, marine structures, navigation, and ocean energetics. However, their transient nature and wide spatial extent make them particularly challenging to observe systematically, resulting in fragmented and geographically biased observational records.We present the Internal Waves Service (IWS), which provides a first step towards addressing this gap, as a global, open, service-oriented framework for the systematic detection, mapping, and archiving of ISWs from satellite Earth Observation data. The service currently exploits synthetic aperture radar (SAR) imagery acquired by Sentinel-1 in Wave Mode, which provides unique, globally distributed observations of ISW surface signatures. Unlike traditional studies focused on specific regions or short time periods, the IWS processes all Sentinel-1 Wave Mode acquisitions on a continuous basis, enabling consistent global mapping of ISW presence and absence.ISW detection is performed using an AI-assisted classification framework applied to SAR vignettes, supported by expert validation and iterative model refinement. The resulting products form a persistent, standardized dataset documenting spatial patterns and temporal variability of ISW activity across ocean basins.By consolidating previously fragmented observations into a coordinated global dataset, the IWS provides a new observational basis for assessing the role of internal waves within ocean energy pathways. This systematic mapping supports comparative analyses, facilitates model evaluation, and opens the door to more consistent integration of internal wave processes alongside tides in multiscale ocean dynamics and energy budgets. Developed as a community-driven initiative involving 24 research institutions across 12 countries, the IWS is designed to evolve towards broader sensor integration and enhanced spatial coverage, strengthening its relevance for ocean modelling and climate studies.

Invertebrate larvae are often abundant in the surface ocean, which plays a key role in their dispersal and connectivity. Pelagic microhabitats characterized by small‐scale hydrographic variability are complex and ubiquitous in the coastal ocean, but their study is challenging, and they have been largely neglected in meroplankton ecology. Surface convergences, i.e., surface microhabitats featuring convergent horizontal currents, may aggregate the last larval stage of the American lobster and could provide shelter and food for Stage IV postlarvae and thus enhance their condition. We tested these hypotheses by conducting a series of cruises in the southwestern Gulf of Maine in summer 2021, sampling 15 paired sets of potential convergences and off‐convergence unstructured habitat. We measured postlarval abundance, surface hydrography, acoustic backscatter, and circulation. Experiments and image analysis compared condition, color, and morphology of postlarvae sampled inside and outside potential convergences. Potential convergences varied in near‐surface hydrographic patterns, with most displaying consistency among two transects and diverse patterns in salinity and temperature (e.g., across‐convergence gradients with equal or different signs). While the highest postlarval abundances were found in convergences, abundance patterns on and off convergences were not consistent, and another analysis indicated higher abundance in convergences than in a 7‐year untargeted surface ocean data set. Experiments indicated no survivorship differences among convergence and non‐convergence individuals at two temperatures, while image analyses revealed differences in color and size. Physical measurements and qualitative neuston community analyses indicated substantial heterogeneity among potential convergences. Our results reinforce that small‐scale heterogeneities are highly variable but important to the ecology of meroplankton, including the pelagic and neustonic habitats where lobster postlarvae are abundant.

: Plankton and nekton may respond passively or actively to large‐amplitude, nonlinear internal waves (NLIW), with periods and wavelengths on the order of minutes and hundreds of meters, and the NLIW can cause direct or indirect changes in distribution. NLIW are ubiquitous in the coastal ocean, but understanding the influence of NLIW on organism response and distribution is challenging, because of NLIW unpredictability, short temporal and spatial scales, and the difficulty in resolving the biological response. Measurements of currents, temperature, and shark acoustic traces in Massachusetts Bay were used to evaluate the short‐term response of individuals as well as the mean effects on the distribution of an aggregation of small sharks, Squalus acanthias. In two NLIW events, we detected 527 and 3240 shark traces. Individuals moved up and down in response to the currents associated with the sinking and rising of the thermocline. However, mean distribution deepened during one of the events, suggesting that organisms did not merely move in concert with the thermocline oscillation, but that sharks instead might have responded actively. Measurements of vertical currents and shark's depth change during one of the NLIW events indicate that with downward currents (sinking of the thermocline), the sharks tend to react passively. However, in response to the fastest upward currents, sharks appeared to swim down, supporting an active response in the rising phase of the wave. NLIW and other high‐frequency processes can have a profound influence on the distribution of pelagic organisms, yet their ecological consequences remain largely unaccounted for.

Abundance, species diversity, and horizontal distributions of barnacle cyprids offshore of La Jolla, southern California were described from May 2014 to August 2016 to determine how the nearshore barnacle larval assemblage changed before, during, and after the 2015–16 El Niño. The entire water column was sampled at five stations located within one km of shore with water depths of 4, 6, 8, 10, and 12 m during 33 cruises that encompassed the time when El Niño conditions impacted the area. Nearshore temperature and thermal stratification was concurrently measured using a CTD. Six identified cyprid species, including Chthamalus fissus, Pollicipes polymerus, Megabalanus rosa, Tetraclita rubescens, Balanus glandula, and B. trigonus, along with four unknown species, were collected in our samples. DNA barcoding was used to confirm identifications in a subset of the larvae. C. fissus was more than eight times more abundant than any other species, and while abundance varied by species, cyprid density was highest for all species except for M. rosa before and after the El Niño event, and lower during the environmental disturbance. There were significant differences in cross-shore distributions among cyprid species, with some located farther offshore than others, along with variability in cross-shore distributions by season. C. fissus cyprids were closest to shore during spring-summer cruises when waters were the most thermally stratified, which supports previous findings that C. fissus cyprids are constrained nearshore when thermal stratification is high. Relative species proportions varied throughout the study, but there was no obvious change in species assemblage or richness associated with El Niño. We speculate that barnacle cyprid species diversity did not increase at our study site during the 2015–16 El Niño, as it has in other areas during previous El Niño Southern Oscillation events, due to the lack of anomalous northward flow throughout the 2015–16 event.

We assessed the effects of large‐scale oceanic disturbances on the settlement rate of an abundant intertidal barnacle. Daily or weekly settlement, nearshore temperature, currents, and abundance of early‐stage barnacle nauplii and Chthamalus fissus cyprids were measured in La Jolla, California, from the inception of the large‐scale warm‐water anomaly known as the “Blob” in 2014, to 1 yr following the 2015/2016 El Niño. We also measured over 2 yr of weekly settlement rates during the 1997/1998 El Niño in La Jolla and in two Mexican sites. Settlement was low during the Blob and the 2015/2016 El Niño, but increased dramatically after its end, and rates remained high through spring 2017. Barnacle nauplii and C. fissus cyprid abundances were also low during the Blob and El Niño. Nearshore water column thermal stratification and variability of the high‐frequency cross‐shore currents, a measure of internal wave activity, declined during the Blob and El Niño, but increased at the end of El Niño. Similarly, settlement rates in the Mexican sites were low during the 1997/1998 El Niño. The reduction in settlement during the Blob and El Niño may be related to two factors: a decrease in water column stratification, which can influence internal bore larval transport and the cross‐shore distribution of larvae, and also to reduced early‐stage larval abundance, potentially related to lower reproductive output or high nauplii mortality during the disturbances.

A research cruise to Hannibal Bank, a seamount and an ecological hotspot in the coastal eastern tropical Pacific Ocean off Panama, explored the zonation, biodiversity, and the ecological processes that contribute to the seamount’s elevated biomass. Here we describe the spatial structure of a benthic anomuran red crab population, using submarine video and autonomous underwater vehicle (AUV) photographs. High density aggregations and a swarm of red crabs were associated with a dense turbid layer 4–10 m above the bottom. The high density aggregations were constrained to 355–385 m water depth over the Northwest flank of the seamount, although the crabs also occurred at lower densities in shallower waters (∼280 m) and in another location of the seamount. The crab aggregations occurred in hypoxic water, with oxygen levels of 0.04 ml/l. Barcoding of Hannibal red crabs, and pelagic red crabs sampled in a mass stranding event in 2015 at a beach in San Diego, California, USA, revealed that the Panamanian and the Californian crabs are likely the same species,Pleuroncodes planipes, and these findings represent an extension of the southern endrange of this species. Measurements along a 1.6 km transect revealed three high density aggregations, with the highest density up to 78 crabs/m², and that the crabs were patchily distributed. Crab density peaked in the middle of the patch, a density structure similar to that of swarming insects.

This paper explores the use of a Bayesian non-parametric topic modeling technique for the purpose of anomaly detection in video data. We present results from two experiments. The first experiment shows that the proposed technique is automatically able characterize the underlying terrain, and detect anomalous flora in image data collected by an underwater robot. The second experiment shows that the same technique can be used on images from a static camera in a dynamic unstructured environment. In the second dataset, consisting of video data from a static seafloor camera capturing images of a busy coral reef, the proposed technique was able to detect all three instances of an underwater vehicle passing in front of the camera, amongst many other observations of fishes, debris, lighting changes due to surface waves, and benthic flora.

The barnacle Chthamalus fragilis is found along the US Atlantic seaboard historically from the Chesapeake Bay southward, and in the Gulf of Mexico. It appeared in New England circa 1900 coincident with warming temperatures, and is now a conspicuous member of rocky intertidal communities extending through the northern shore of Cape Cod, Massachusetts. The origin of northern C. fragilis is debated. It may have spread to New England from the northern end of its historic range through larval transport by ocean currents, possibly mediated by the construction of piers, marinas, and other anthropogenic structures that provided new hard substrate habitat. Alternatively, it may have been introduced by fouling on ships originating farther south in its historic distribution. Here we examine mitochondrial cytochrome c oxidase I sequence diversity and the distribution of mitochondrial haplotypes of C. fragilis from 11 localities ranging from Cape Cod, to Tampa Bay, Florida. We found significant genetic structure between northern and southern populations. Phylogenetic analysis revealed three well-supported reciprocally monophyletic haplogroups, including one haplogroup that is restricted to New England and Virginia populations. While the distances between clades do not suggest cryptic speciation, selection and dispersal barriers may be driving the observed structure. Our data are consistent with an expansion of C. fragilis from the northern end of its mid-19th century range into Massachusetts.

We tested the hypothesis that humpback whales aggregate at the southern flank of Stellwagen Bank (SB) in response to internal waves (IWs) generated semidiurnally at Race Point (RP) channel because of the presence of their preferred prey, planktivorous fish, which in turn respond to zooplankton concentrated by the predictable IWs. Analysis of synthetic aperture radar (SAR) images indicates that RP IWs approach the southern flank of SB frequently (∼62% of the images). Published reports of whale sighting data and archived SAR images point to a coarse spatial coincidence between whales and Race Point IWs at SB's southern flank. The responses of whales to IWs were evaluated via sightings and behavior of humpback whales, and IWs were observed in situ by acoustic backscatter and temperature measurements. Modeling of IWs complemented the observations, and results indicate a change of ∼0.4 m/s in current velocity, and ∼1.5 Pa in dynamic pressure near the bottom, which may be sufficient for bottom fish to detect the IWs. However, fish were rare in our acoustic observations, and fish response to the IWs could not be evaluated. RP IWs do not represent the leading edge of the internal tide, and they may have less mass‐transport potential than typical coastal IWs. There was large interannual variability in whale sightings at SB's southern flank, with decreases in both numbers of sightings and proportion of sightings where feeding was observed from 2008 to 2013. Coincidence of whales and IWs was inconsistent, and results do not support the hypothesis.