Marco Abbiati

The ability to gather genetic information using DNA metabarcoding of bulk samples obtained directly from the environment is crucial to determine biodiversity baselines and understand population dynamics in the marine realm. While DNA metabarcoding is effective in evaluating biodiversity at community level, genetic patterns within species are often concealed in metabarcoding studies and overlooked for marine invertebrates. In the present study, we implement recently developed bioinformatics tools to investigate intraspecific genetic variability for invertebrate taxa in the Mediterranean Sea. Using metabarcoding samples from Autonomous Reef Monitoring Structures (ARMS) deployed in three locations, we present haplotypes and diversity estimates for 145 unique species. While overall genetic diversity was low, we identified several species with high diversity records and potential cryptic lineages. Further, we emphasize the spatial scale of genetic variability, which was observed from locations to individual sampling units (ARMS). We carried out a population genetic analysis of several important yet understudied species, which highlights the current knowledge gap concerning intraspecific genetic patterns for the target taxa in the Mediterranean basin. Our approach considerably enhances biodiversity monitoring of charismatic and understudied Mediterranean species, which can be incorporated into ARMS surveys.

The northern Adriatic Sea (NAS) hosts numerous biogenic subtidal reefs that are considered biodiversity hotspots. Several studies have already investigated the origin and biodiversity of these reefs. However, many of them are still unexplored and further knowledge is needed for their conservation. Here, the spatial variability, epibenthic community structure, and environmental features that characterize these habitats were investigated. Fifteen randomly selected reefs were sampled between 2013 and 2017, including some remote sites that have never been studied before. A fuzzy k-means clustering method and redundancy analysis were used to find similarities among sites in terms of epibenthic assemblages and to model relationships with abiotic variables. The results showed that these reefs are highly heterogeneous in terms of species composition and geomorphological features. The results were also consistent with previous studies and highlighted three main types of benthic assemblages defined by the dominance of different organisms, mainly reflecting the coastal-offshore gradient: nearshore reefs, generally dominated by stress-tolerant species; reefs at a middle distance from the coast, characterized by sponges, non-calcareous encrusting algae and ascidians; offshore reefs, dominated by reef builders. However, distance from the coast was not the only factor affecting species distribution, as other local factors and environmental characteristics also played a role. This kind of biogenic reefs in temperate seas are still poorly known. The present work contributed to shed further light on these habitats, by complementing the results of previous studies on their natural diversity, highlighting the specificity of the epibenthic communities of NAS reefs and the need to improve current, still inadequate, conservation measures.

The aim of the present study was to propose a biotic index (North Adriatic Mesophotic BiogEnic Reefs, NAMBER) suitable for assessing the ecological quality of the mesophotic biogenic reefs of the northern Adriatic continental shelf based on photographic sampling. At each of the 20 study sites, the degree of bioconstruction (expressed as percentage cover of crustose coralline algae), the α‐diversity (expressed as the mean number of taxa), and the degree of sensitivity to human disturbance and climate change (based on literature data and expert judgement) of the benthic assemblages were selected as descriptors and combined in the NAMBER index, using the best values that the three metrics can currently achieve in the studied region as a reference. The study highlighted that there was large spatial heterogeneity among reefs and high variability in the ecological quality values obtained by NAMBER, ranging from bad to high. The index indicates that reefs lying furthest from the coast, under substantially lower anthropogenic pressure, have a generally higher status of environmental quality. However, a clear geographical pattern did not emerge, as reefs close together often had different ecological qualities. The NAMBER index, which combines three ecological descriptors, in accordance with the requirements of the European Marine Strategy Framework Directive, represents a specific adaptation to the northern Adriatic Sea of a multimetric index previously developed for the north‐western Mediterranean Sea, capitalizing on previous knowledge and research efforts. This multimetric biotic index provides an effective standardized tool for monitoring programmes and environmental impact assessments in the northern Adriatic mesophotic biogenic reefs and lays the foundation for ecosystem‐based management and conservation in this basin.

A sediment bypassing plant based on innovative jet pump, ejectors, has been tested in the first-of-a-kind demo application at the harbor of Cervia (Italy, Northern Adriatic Sea). The ejector is a jet pump aimed to reduce sediment accumulation in navigation channels and coastal areas. Herein we present results of the first study assessing the potential ecological effects of the ejectors plant. Sediment characteristics, benthic, and fish assemblages before and after the plant activation have been analyzed in the putatively impacted (the sediment removal and discharge) areas and four control locations, one time before and two times after plant activation. Ejectors plant operation resulted in a reduction of the mud and organic matter content in the sediment, as well as in changes in shell debris amount in the impacted areas. Abundance and species richness of benthic macroinvertebrates, initially reduced in the impacted areas, probably due to the previous repeated dredging, returned to higher values during demo plant continuous operation. Higher diversity of fish fauna was observed in the study area during plant operation period. Observed dynamics of the ecological status of the marine habitat suggest that an ejectors plant could represent an eco-friendly solution alternative to dredging operations to solve harbor siltation problems.

MedSens index provides the environmental status of subtidal rocky coastal habitats based on open data collected by trained volunteers using the Reef Check Mediterranean Underwater Coastal Environment Monitoring protocol. It is based on 25 species, incorporating their sensitivities to the EU Marine Strategy Framework Directive pressures and their distributions and abundances. MedSens was applied along the Tuscan Archipelago National Park Islands’ coasts, providing the mean sensitivity of the assemblages. It can help decision-makers in implementing marine biodiversity conservation measures.

Oyster shells are substratum for different epibiontic and endobiontic organisms, including pests and parasites. Rocellaria dubia is endolithic and facultative tube-dwelling bivalve, boring in different calcareous substrates, including the shells of bivalves. In 2020, R. dubia was found as endolithic in the shells of the Pacific oyster Magalana gigas, from an oyster farm off the Sacca di Goro lagoon (Emilia-Romagna region, Northern Adriatic Sea, Italy). The purpose of this study was to describe this newly recorded association. Altogether, 136 specimens of R. dubia were found in 15 oysters, photographed under a stereoscope, and their length was measured. Heavily infested oysters hosted tens of R. dubia borers, which were perforating the whole thickness of the oyster valves. The flesh of these oysters was heavily damaged, suggesting parasitic association. R. dubia specimens were categorized into three age classes (0–1, 1–2, and 2–3 years old). M. gigas/R. dubia might be a widespread association, overlooked due to the very scarce research on macrofauna associated with M. gigas. Considering the negative effects of R. dubia endobiosis on oyster fitness, and possible impacts on oyster aquaculture, further research should be conducted in order to elucidate the distribution and ecological characteristics of this parasitic association.

Explorations of the Mediterranean deep sea using remotely operated vehicles have shown that the sea bed hosts rich habitats, supporting high biodiversity. However, there have been only a few studies dealing with the southern part of the basin, leading to limited protection and conservation efforts in this area. This study aimed to explore the sea bed off Linosa Island (Sicily Channel, southern Mediterranean Sea), which is considered a ‘sentinel area’ for alien species and global environmental changes owing to its geographic position, thus deserving special attention. Remotely operated vehicle surveys, carried out in 2016 and 2017, were analysed to provide the first ecological characterization of benthic assemblages at depths −19 – −384 m around Linosa Island. Communities were dominated by three priority habitats, amounting to 39% of the almost 5 km of the sea floor that was surveyed. These are represented in the euphotic zone by Posidonia oceanica meadows and, at greater depth, by newly discovered dense coral forests and extended rhodolith/maërl beds. Sixteen habitat‐forming species included in the Red List of the International Union for Conservation of Nature (e.g. gorgonians Eunicella cavolini and Paramuricea clavata, and black corals Antipathella subpinnata and Leiopathes glaberrima) were recorded, as well as individuals of Sargassum sp. at −100 m depth. The volcanic island of Linosa represents a small, naturally preserved area, with very limited human pressure, hosting rich marine benthic biodiversity. Given the high species and habitat richness, we recommend its inclusion in the Special Protected Areas of Mediterranean Importance project (United Nations Environment Programme) and suggest a redefinition of the existing marine protected area extension.