YOYoichiro Okubo

Yoichiro Okubo

*This is an algorithmically generated author record based on publicly available information.

Current Organizations / Institutes

The organizations/institutes from the scholar's latest article

Previous Organizations / Institutes

The organizations / institutes from the scholar's other articles in the past ten years


Yoichiro Okubo has a total of 303 co-authors. Here are the top co-authors by number of shared publications:

  • Kazutoshi Shibuya

    Department of Surgical Pathology, Toho University Faculty of Medicine, Omori-Nishi 5-21-16, Ota-ku, Tokyo 143-8540, Japan

    23 shared publications
  • Kota Washimi

    Department of Pathology, Kanagawa Cancer Center, 2-3-2 Nakao, Asahi-ku, Yokohama, Kanagawa, 241-8515, Japan

    23 shared publications
  • Yohei Miyagi

    Department of Pathology, Kanagawa Cancer Center, 2-3-2 Nakao, Asahi-ku, Yokohama, Kanagawa, 241-8515, Japan; Molecular Pathology and Genetics Division, Kanagawa Cancer Center Research Institute, 2-3-2 Nakao, Asahi-ku, Yokohama, Kanagawa, 241-8515, Japan

    21 shared publications
  • Emi Yoshioka

    20 shared publications
  • Tomoyuki Yokose

    Department of Pathology, Odawara Municipal Medical Center, 46 Kuno, Odawara, Kanagawa, 250-8558, Japan

    20 shared publications
  • Shinya Sato

    Department of Pathology, Kanagawa Cancer Center, 2-3-2 Nakao, Asahi-ku, Yokohama, Kanagawa, 241-8515, Japan; Molecular Pathology and Genetics Division, Kanagawa Cancer Center Research Institute, 2-3-2 Nakao, Asahi-ku, Yokohama, Kanagawa, 241-8515, Japan

    15 shared publications

Latest Publications

  • Open Access

    Routine prostate biopsy reports carry grade-specific tumor burden information beyond the highest grade group

    by Yoichiro Okubo, Shu Yuguchi, Rika Kasajima, Shinya Sato, Noboru Nakaigawa, Yukihiko Hiroshima, Kota Washimi, Shuka Wada, Yuki Kobayashi, Tatsuma Juichi, et al.

  • Open Access

    Determinants of nucleic acid quality in formalin-fixed paraffin-embedded bladder urothelial carcinoma specimens: effects of specimen type, fixation conditions, and storage time

    by Shu Yuguchi, Yoichiro Okubo, Rika Kasajima, Noboru Nakaigawa, Yukihiko Hiroshima, Chie Hasegawa, Kota Washimi, Shinya Sato, Tomoyuki Yokose, Tatsuma Juichi, et al.

  • Real-World Genomic Characteristics and Prognostic Association in Advanced Papillary Thyroid Carcinoma

    by Soji Toda, Yukihiko Hiroshima, Hiroyuki Iwasaki, Mei Kadoya, Chihiro Suzuki, Haruhiko Yamazaki, Yoichiro Okubo, Aya Saito, Katsuhiko Masudo

    PURPOSE: Most thyroid cancers are initiated by alterations activating the mitogen-activated protein kinase (MAPK) pathway and progress via additional genomic events. Because papillary thyroid carcinoma (PTC) generally has a favorable prognosis and rarely advances, knowledge about later-acquired genomic alterations and their impact on prognosis is limited. MATERIALS AND METHODS: This study is a real-world database study using a nationwide database that contains clinical data and comprehensive genomic profiling (CGP) test results. We investigated gene alterations and their impact on prognosis in advanced PTC. RESULTS: The study included 322 patients with advanced papillary carcinoma who underwent CGP tests for drug selection between June 2019 and April 2024. Metastases were present in 96% of cases, and 70% received systemic therapy. The most common genomic abnormalities were mutations in the TERT promoter and BRAF . BRAF alterations were mutually exclusive with RBM10 and other MAPK pathway genes such as RET, NRAS, and NTRK1 , but co-occurred with TERT and AKT1 . The MAPK pathway had the highest frequency of alterations (96%), followed by the phosphoinositide 3-kinase (PI3K; 23%), cell cycle (13%), and p53 (11%) pathways. Survival analysis showed that alterations in PTEN and CDKN2A were independent poor prognostic factors. Patients harboring alterations in the PI3K or cell cycle pathway showed significantly shorter overall survival. CONCLUSION: Our study clarified the frequency, co-occurrence, and exclusivity of gene alterations in advanced PTC. Alterations in the PI3K or cell cycle pathways are linked to poor prognosis, and therapies targeting these pathways may warrant further investigation.

  • Open Access

    Invasive stratified mucin-producing carcinoma of the uterine cervix masquerading as squamous cell carcinoma on biopsy: a diagnostic pitfall

    by Yoichiro Okubo, Shuka Wada, Shu Yuguchi, Tomomi Yokozawa, Haruya Saji, Yohei Miyagi

    Invasive stratified mucin-producing carcinoma (ISMC) of the uterine cervix can masquerade as non-keratinizing squamous cell carcinoma (SCC) on small biopsies because it often grows as solid nests with minimal gland formation and little or no keratinization, and may show patchy cytokeratin 5/6 (CK5/6) positivity. We report a 44-year-old woman whose outside cervical biopsy was interpreted as SCC. Repeat biopsy showed SCC-like solid nests without keratinization and patchy CK5/6 positivity, but p40 and p63 were negative and periodic acid-Schiff with diastase (D-PAS) demonstrated diastase-resistant intracytoplasmic mucin within tumor nests. Radical hysterectomy revealed a human papillomavirus (HPV)-associated endocervical adenocarcinoma with a predominant ISMC component, lymphovascular invasion, and nodal metastases. This case highlights a practical diagnostic pitfall and supports a minimal, reproducible workup for p16 block-positive, SCC-like biopsies: p40/p63 plus a mucin stain (D-PAS and/or Alcian blue), with PAX8 as needed. Funding: Japan Society for the Promotion of Science (JSPS) KAKENHI [25 K10294].

  • Open Access

    Panel-negative strategy for suspected fusion-driven papillary thyroid carcinoma

    by Yoichiro Okubo, Ikki Takada, Mei Kadoya, Soji Toda, Shuka Wada, Katsuhiko Masudo, Yohei Miyagi, Hiroyuki Hayashi

    Molecular testing in thyroid nodules and papillary thyroid carcinoma (PTC) is not required for every case, but it becomes clinically important when the result may influence diagnostic confidence, surgical planning, including the extent of surgery, or systemic therapy options. Representative scenarios include indeterminate thyroid cytology, clinically advanced or metastatic disease, and recurrent or progressive PTC. In these settings, the key question is not simply whether a common hotspot mutation is present, but whether clinically relevant drivers, including RET and NTRK fusions, have been adequately assessed. Fusion-inclusive molecular testing is preferable when molecular information is required for thyroid nodules or PTC, particularly when the clinical question includes the possibility of a fusion-driven tumor. However, in routine practice, limited or mutation-focused assays, such as BRAF V600E testing or hotspot DNA panels, may already have been performed because of limitations in access, reimbursement, specimen availability, or institutional workflow. Negative results from such assays can be misread as definitive exclusion of clinically relevant fusions, despite pre-analytic constraints and incomplete fusion coverage. This Correspondence does not advocate a hotspot-first workflow, nor does it propose serial add-on testing as a preferred strategy. Rather, we propose a pragmatic “panel-negative” communication and decision-making framework for situations in which limited testing has already been performed and morphologic or clinical suspicion for fusion-driven PTC persists. The approach emphasizes (i) selecting a thyroid-appropriate molecular assay from the outset whenever feasible, (ii) explicitly documenting residual suspicion and the scope of the performed assay in pathology reports, (iii) using pan-TRK immunohistochemistry only as an optional triage tool rather than a rule-out test, and (iv) considering RNA-based or other fusion-optimized assays only when the original clinical question remains unresolved and the result is clinically relevant. This framework is intended to reduce false reassurance from negative limited panels while reinforcing the need for appropriate molecular testing in the correct clinical scenario.

  • Open Access

    Histologic heterogeneity of primary and nodal lesions and intra-nodal comparative analysis after neoadjuvant selpercatinib in RET fusion–positive papillary thyroid carcinoma

    by Chiaki Kanno, Yoichiro Okubo, Mei Kadoya, Shinya Sato, Soji Toda, Ryuji Nasu, Yuichi Ichikawa, Shu Yuguchi, Chie Hasegawa, Emi Yoshioka, et al.

  • Open Access

    Cribriform pattern and IDC ‐P in prostate biopsies: prognostic relevance and reporting in metastatic disease

    by Yoichiro Okubo, Rika Kasajima, Shinya Sato, Yayoi Yamamoto, Atsuto Suzuki, Tomohiko Aigase, Shu Yuguchi, Chie Hasegawa, Emi Yoshioka, Kota Washimi, et al.

    Cribriform pattern and intraductal carcinoma of the prostate are recognized adverse histological features, yet their prognostic value in treatment‐naïve metastatic disease remains uncertain. We conducted a single‐center retrospective study of 183 biopsy‐proven prostate carcinomas (105 with metastatic castration‐sensitive prostate carcinoma and 78 non‐metastatic high‐grade cases) diagnosed between 2017 and 2024. Cribriform pattern, intraductal carcinoma of the prostate, and coagulative tumor necrosis were recorded per core and summarized as patient‐level binary status and as semiquantitative proportions per cancer‐positive core. Two multivariable logistic regression models (binary and semiquantitative) were fitted, and receiver operating characteristic (ROC) analysis evaluated the discriminatory performance of the cribriform proportion. Cribriform pattern and intraductal carcinoma of the prostate were more frequent in metastatic castration‐sensitive prostate carcinoma. In the semiquantitative model, the cribriform proportion remained independently associated with metastatic status [odds ratio (OR) 1.29, 95% CI 1.07–1.55, p = 0.008; per 1.0 increase in the proportion, equivalent to OR 1.03 per 10%‐point increase], whereas necrosis remained significant only in the binary model. The cancer‐positive core rate and a lower total number of biopsy cores were predictive in both models, whereas prostate‐specific antigen, intraductal carcinoma of the prostate, and Grade Group composition were not independent predictors. ROC analysis for the cribriform proportion yielded an area under the curve of 0.704, with a Youden Index cut‐off of 0.445 (approximately half of cancer‐positive cores), corresponding to a sensitivity of 57.1% and a specificity of 75.6%. These findings indicate that semiquantitative reporting of cribriform pattern – expressed as the proportion of cancer‐positive cores – adds discriminatory information for metastatic status at presentation and could complement binary reporting in high‐grade disease. From a clinical perspective, such evaluation may refine risk stratification at diagnosis and support treatment intensification strategies in very‐high‐risk patients.


  • Open Access

    Stepwise identification of an SQSTM1::NTRK3 fusion in papillary thyroid carcinoma: Diagnostic pitfalls and the value of integrative genomic profiling

    by Yoichiro Okubo, Mei Kadoya, Soji Toda, Ryuji Nasu, Shu Yuguchi, Kota Washimi, Shinya Sato, Yukihiko Hiroshima, Hiroyuki Hayashi, Katsuhiko Masudo, et al.


  • Open Access

    Effect of storage temperature on nucleic acid quality in formalin-fixed paraffin-embedded tissue samples

    by Yoichiro Okubo, Nagisa Toyama, Rika Kasajima, Haruya Saji, Hiroyuki Ito, Yui Kaburaki, Chie Hasegawa, Shu Yuguchi, Emi Yoshioka, Kota Washimi, et al.


  • Open Access

    Neoadjuvant Chemotherapy With Selpercatinib for Locally Advanced RET Fusion‐Positive Papillary Thyroid Carcinoma: A Case Report

    by Mei Kadoya, Katsuhiko Masudo, Hiroyuki Ito, Yoichiro Okubo, Yohei Miyagi, Hiroyuki Hayashi, Hiroyuki Iwasaki

    A 65‐year‐old male presented to our hospital with a complaint of a left cervical mass. The left supraclavicular lymph node was enlarged, measuring 77 mm, and biopsy results confirmed metastasis of papillary thyroid carcinoma (PTC). The left supraclavicular lymph node extended to the upper mediastinum and invaded the internal jugular and subclavian veins, with suspicion of common carotid and subclavian artery invasion. Surgical resection was deemed infeasible. The Oncomine Dx Target Test system, a gene panel test using a next‐generation sequencer, of the metastatic lymph node was positive for RET fusion ( CCDC6-RET ), and selpercatinib treatment was initiated. After 4 months, the tumor reduced in size, and surgery was performed. The postoperative course was uneventful, with ongoing follow‐up. This case is a successful case of neoadjuvant chemotherapy for RET fusion‐positive PTC with local regional progression.