José Luis Benito Alonso

Shrubification (i.e., increasing shrub abundance) and thermophilisation (i.e., increasing dominance of warmth-demanding species) are among the most widely documented imprints of climate change on mountain ecosystems. Still, it remains insufficiently quantified how increasing shrub cover alters the near-ground microclimate and snow duration, and in turn, how this interacts with the climate-change responses of alpine plant communities. To this end, we leveraged 21 years of vegetation resampling data and soil temperature time-series from 576 permanent plots positioned on European mountaintops and covering the treeline ecotone up to the middle alpine belt. Snow duration decreased faster in plots with stronger macroclimate warming, which in turn led to a rise in minimum soil temperatures of 0.28°C per decade across all plots. Overall thermophilisation rates were higher in sheltered habitats with snow accumulation, while habitats with higher shrub cover showed faster loss of cold-adapted species. Further research is needed to disentangle the joint effects of shrubs, snow and microclimates, yielding more accurate projections of climate-induced plant community reshuffling in alpine habitats.

Climate change increases plant species richness in alpine ecosystems. However, to what extent this diversity enrichment masks extinction dynamics of resident species remains elusive. In this study, we used floristic resurvey data from 896 permanent vegetation plots across 62 European mountain summits to show that local extinctions have increased over the past 21 years. Extinction rates rose with the magnitude of warming, and species were more likely to go extinct toward their low-elevation range margins and in communities undergoing stronger thermophilization. Moreover, local extinctions were significantly related to preceding abundance declines, which can serve as an early warning signal. These findings suggest that despite increasing plant species richness, plant assemblages above the treeline face an accelerating but so far neglected loss of their most characteristic species.

Recent changes in alpine vegetation are often attributed to climate warming, particularly community composition shifts towards more warmth-associated species, or thermophilization. Here we assess the link between thermophilization and warming across 53 European mountain summits. We combine long-term macroclimatic and microclimatic temperature time series with vegetation surveys in 724 permanent plots, monitored over 21 years, to evaluate a possible thermophilization signal and relate it to rates of change in 10 temperature metrics. We find evidence of both thermophilization of alpine plant communities and an increase in temperatures. However, although these two trends are related when averaged across mountain regions, their relationship is weak at the individual plot scale, especially when considering microclimatic temperature metrics. Instead, substrate conditions and particularly the availability of thermophilic colonizers in the surrounding vegetation have a major influence on plot-level thermophilization rates. We conclude that the response of plant communities to climate change strongly depends on the abiotic and biotic context, and intensified monitoring efforts are needed to reduce the resulting uncertainties.

Climate warming is shifting biological communities, with warmth-demanding species being favoured at the expense of cold-adapted species in a process referred to as thermophilization^1-4. Because biodiversity responses often lag behind climate warming, climatic debts are accumulating in many ecosystems across the world^5-7. Although we might expect that thermophilization and climatic debts will vary among habitats, standardized quantification across ecosystems is lacking. Here we analysed multidecadal data from 6,067 resurveyed vegetation plots over 12-78 years in forests, grasslands and on alpine summits across Europe. We demonstrate that forest understory and grassland plant communities experienced positive thermophilization, although not significantly different from zero. By contrast, alpine summit vegetation showed much stronger (up to five times) and significant thermophilization. Thermophilization was driven largely by increases in warmth-demanding species in grasslands, by declines in cold-adapted species on alpine summits and by both processes in forests. Significant climatic debts have accumulated in forests and alpine summits, but less so in grasslands, with debts positively correlated with macroclimate temperature changes. Our findings uncover divergent thermophilization trajectories and increasing climatic debts across ecosystems. Moreover, we highlight the mechanisms that enable some communities to track climate change more closely than others and provide a basis for projecting future shifts in plant communities under accelerating climate warming.

Aims: We introduce ReSurveyEurope — a new data source of resurveyed vegetation plots in Europe, compiled by a collaborative network of vegetation scientists. We describe the scope of this initiative, provide an overview of currently available data, governance, data contribution rules, and accessibility. In addition, we outline further steps, including potential research questions.Results: ReSurveyEurope includes resurveyed vegetation plots from all habitats. Version 1.0 of ReSurveyEurope contains 283,135 observations (i.e., individual surveys of each plot) from 79,190 plots sampled in 449 independent resurvey projects. Of these, 62,139 (78%) are permanent plots, that is, marked in situ, or located with GPS, which allow for high spatial accuracy in resurvey. The remaining 17,051 (22%) plots are from studies in which plots from the initial survey could not be exactly relocated. Four data sets, which together account for 28,470 (36%) plots, provide only presence/absence information on plant species, while the remaining 50,720 (64%) plots contain abundance information (e.g., percentage cover or cover–abundance classes such as variants of the Braun‐Blanquet scale). The oldest plots were sampled in 1911 in the Swiss Alps, while most plots were sampled between 1950 and 2020.Conclusions: ReSurveyEurope is a new resource to address a wide range of research questions on fine‐scale changes in European vegetation. The initiative is devoted to an inclusive and transparent governance and data usage approach, based on slightly adapted rules of the well‐established European Vegetation Archive (EVA). ReSurveyEurope data are ready for use, and proposals for analyses of the data set can be submitted at any time to the coordinators. Still, further data contributions are highly welcome.

Research in global change ecology relies heavily on global climatic grids derived from estimates of air temperature in open areas at around 2 m above the ground. These climatic grids do not reflect conditions below vegetation canopies and near the ground surface, where critical ecosystem functions occur and most terrestrial species reside. Here, we provide global maps of soil temperature and bioclimatic variables at a 1‐km²resolution for 0–5 and 5–15 cm soil depth. These maps were created by calculating the difference (i.e. offset) between in situ soil temperature measurements, based on time series from over 1200 1‐km²pixels (summarized from 8519 unique temperature sensors) across all the world's major terrestrial biomes, and coarse‐grained air temperature estimates from ERA5‐Land (an atmospheric reanalysis by the European Centre for Medium‐Range Weather Forecasts). We show that mean annual soil temperature differs markedly from the corresponding gridded air temperature, by up to 10°C (mean = 3.0 ± 2.1°C), with substantial variation across biomes and seasons. Over the year, soils in cold and/or dry biomes are substantially warmer (+3.6 ± 2.3°C) than gridded air temperature, whereas soils in warm and humid environments are on average slightly cooler (−0.7 ± 2.3°C). The observed substantial and biome‐specific offsets emphasize that the projected impacts of climate and climate change on near‐surface biodiversity and ecosystem functioning are inaccurately assessed when air rather than soil temperature is used, especially in cold environments. The global soil‐related bioclimatic variables provided here are an important step forward for any application in ecology and related disciplines. Nevertheless, we highlight the need to fill remaining geographic gaps by collecting more in situ measurements of microclimate conditions to further enhance the spatiotemporal resolution of global soil temperature products for ecological applications.

Species turnover is ubiquitous. However, it remains unknown whether certain types of species are consistently gained or lost across different habitats. Here, we analysed the trajectories of 1827 plant species over time intervals of up to 78 years at 141 sites across mountain summits, forests, and lowland grasslands in Europe. We found, albeit with relatively small effect sizes, displacements of smaller‐ by larger‐ranged species across habitats. Communities shifted in parallel towards more nutrient‐demanding species, with species from nutrient‐rich habitats having larger ranges. Because these species are typically strong competitors, declines of smaller‐ranged species could reflect not only abiotic drivers of global change, but also biotic pressure from increased competition. The ubiquitous component of turnover based on species range size we found here may partially reconcile findings of no net loss in local diversity with global species loss, and link community‐scale turnover to macroecological processes such as biotic homogenisation.

While climatic research about treeline has a long history, the climatic conditions corresponding to the upper limit of closed alpine grasslands remain poorly understood. Here, we propose a climatic definition for this limit, the ‘grassline’, in analogy to the treeline, which is based on the growing season length and the soil temperature. Eighty-seven mountain summits across ten European mountain ranges, covering three biomes (boreal, temperate, Mediterranean), were inventoried as part of the GLORIA project. Vascular plant cover was estimated visually in 326 plots of 1 × 1 m. Soil temperatures were measured in situ for 2–7 years, from which the length of the growing season and mean temperature were derived. The climatic conditions corresponding to 40% plant cover were defined as the thresholds for alpine grassland. Closed vegetation was present in locations with a mean growing season soil temperature warmer than 4.9 °C, or a minimal growing season length of 85 days, with the growing season defined as encompassing days with daily mean ≥ 1 °C. Hence, the upper limit of closed grasslands was associated with a mean soil temperature close to that previously observed at the treeline, and in accordance with physiological thresholds to growth in vascular plants. In contrast to trees, whose canopy temperature is coupled with air temperature, small-stature alpine plants benefit from the soil warmed by solar radiation and consequently, they can grow at higher elevations. Since substrate stability is necessary for grasslands to occur at their climatic limit, the grassline rarely appears as a distinct linear feature.

Current analyses and predictions of spatially explicit patterns and processes in ecology most often rely on climate data interpolated from standardized weather stations. This interpolated climate data represents long‐term average thermal conditions at coarse spatial resolutions only. Hence, many climate‐forcing factors that operate at fine spatiotemporal resolutions are overlooked. This is particularly important in relation to effects of observation height (e.g. vegetation, snow and soil characteristics) and in habitats varying in their exposure to radiation, moisture and wind (e.g. topography, radiative forcing or cold‐air pooling). Since organisms living close to the ground relate more strongly to these microclimatic conditions than to free‐air temperatures, microclimatic ground and near‐surface data are needed to provide realistic forecasts of the fate of such organisms under anthropogenic climate change, as well as of the functioning of the ecosystems they live in. To fill this critical gap, we highlight a call for temperature time series submissions to SoilTemp, a geospatial database initiative compiling soil and near‐surface temperature data from all over the world. Currently, this database contains time series from 7,538 temperature sensors from 51 countries across all key biomes. The database will pave the way toward an improved global understanding of microclimate and bridge the gap between the available climate data and the climate at fine spatiotemporal resolutions relevant to most organisms and ecosystem processes.