Wenbing Xie
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Wenbing Xie has a total of 221 co-authors. Here are the top co-authors by number of shared publications:
- Stephen B. Baylin
Department of Oncology, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins, The Johns Hopkins University School of Medicine, Baltimore, USA
76 shared publications - Hariharan Easwaran
Department of Oncology, The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins, Baltimore, MD, 21287, USA
75 shared publications - James I. McDonald
Department of Advanced Technology R&D, Revvity Health Sciences, Inc., Lawrence, MA 01843, USA
68 shared publications - Jennifer A. Karlow
Department of Pathology, Dana-Farber Cancer Institute, Boston, MA
68 shared publications - Katherine B. Chiappinelli
The George Washington University 1 Department of Microbiology, Immunology and Tropical Medicine Washington, District of Columbia
68 shared publications - Kathleen H. Burns
Department of Pathology, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA
68 shared publications
Latest Publications
- Open Access
- 9 July 2026
- Published by Springer Nature in Clinical Epigenetics
- Vol. 18 (1)
Epigenetic editing approaches maturity: AI-driven precision design, delivery innovation, and the road to clinical translation
Epigenetic editing achieves durable gene silencing through targeted modification of chromatin and DNA methylation states without altering the genomic sequence—modifications that remain fundamentally reversible compared with genome editing. Long constrained by transient efficacy, insufficient precision, and delivery bottlenecks, the field reached a critical inflection point in 2024–2025, measurable through three quantifiable criteria: (1) mechanistic durability—silencing maintained across ≥ 450 cell divisions in vitro and ≥ 12 months in vivo without continued editor expression; (2) delivery competence—tissue-selective transduction at > 50% efficiency in liver, muscle, and whole brain via engineered lipid nanoparticle and AAV platforms; and (3) clinical validation—advancement of multiple first-in-human trials. The inaugural trial in epigenetic editing was OTX-2002 (targeting MYC-driven malignancies, MYCHELANGELO study), initiated in October 2022, followed by TUNE-401 for chronic hepatitis B (Phase Ib, November 2024) and EPI-321 for facioscapulohumeral muscular dystrophy (Phase I/II, first patient dosed August 2025). Artificial intelligence contributes at distinct levels: deep learning platforms have directly accelerated clinical-stage LNP formulation screening and AAV capsid prediction; AlphaFold3 has optimized protein–DNA interaction validation without yet entering clinical programs; and the 2025 de novo design of DNA-binding proteins smaller than 65 amino acids represents a proof-of-concept breakthrough with zero clinical precedent. This review comprehensively analyzes epigenetic editing’s technological maturation, provides a tiered assessment of AI’s realized and anticipated contributions, critically evaluates the emerging clinical landscape, and identifies decisive unresolved challenges—including long-term stability in non-dividing cells, the lack of monitoring systems and intervention protocols needed to implement reversibility in clinical practice, and manufacturing access barriers. We argue that epigenetic editing is progressively establishing itself as a distinctive therapeutic modality characterized by durable efficacy and sequence-independent safety—reversibility as a theoretical safety mechanism has been validated preclinically, but the monitoring and intervention infrastructure required for its clinical implementation remains to be established. Long-term human validation remains the outstanding core question.
- 9 July 2026
- Published by Springer Nature in Clinical Epigenetics
- Vol. 18 (1)
Open AccessEpigenetic editing approaches maturity: AI-driven precision design, delivery innovation, and the road to clinical translation
Epigenetic editing achieves durable gene silencing through targeted modification of chromatin and DNA methylation states without altering the genomic sequence—modifications that remain fundamentally reversible compared with genome editing. Long constrained by transient efficacy, insufficient precision, and delivery bottlenecks, the field reached a critical inflection point in 2024–2025, measurable through three quantifiable criteria: (1) mechanistic durability—silencing maintained across ≥ 450 cell divisions in vitro and ≥ 12 months in vivo without continued editor expression; (2) delivery competence—tissue-selective transduction at > 50% efficiency in liver, muscle, and whole brain via engineered lipid nanoparticle and AAV platforms; and (3) clinical validation—advancement of multiple first-in-human trials. The inaugural trial in epigenetic editing was OTX-2002 (targeting MYC-driven malignancies, MYCHELANGELO study), initiated in October 2022, followed by TUNE-401 for chronic hepatitis B (Phase Ib, November 2024) and EPI-321 for facioscapulohumeral muscular dystrophy (Phase I/II, first patient dosed August 2025). Artificial intelligence contributes at distinct levels: deep learning platforms have directly accelerated clinical-stage LNP formulation screening and AAV capsid prediction; AlphaFold3 has optimized protein–DNA interaction validation without yet entering clinical programs; and the 2025 de novo design of DNA-binding proteins smaller than 65 amino acids represents a proof-of-concept breakthrough with zero clinical precedent. This review comprehensively analyzes epigenetic editing’s technological maturation, provides a tiered assessment of AI’s realized and anticipated contributions, critically evaluates the emerging clinical landscape, and identifies decisive unresolved challenges—including long-term stability in non-dividing cells, the lack of monitoring systems and intervention protocols needed to implement reversibility in clinical practice, and manufacturing access barriers. We argue that epigenetic editing is progressively establishing itself as a distinctive therapeutic modality characterized by durable efficacy and sequence-independent safety—reversibility as a theoretical safety mechanism has been validated preclinically, but the monitoring and intervention infrastructure required for its clinical implementation remains to be established. Long-term human validation remains the outstanding core question.
- Open Access
- 3 July 2026
- Published by Springer Nature in Research Square
Senoversus rejuvenates cellular and organismal aging by reversing epigenetic states and restoring transcriptional homeostasis
Anti-aging requires interventions capable of simultaneously targeting multiple aging-associated processes to achieve comprehensive rejuvenation. Here, we report that Senoversus, a dual-factor combination of CHIR99021 and bFGF, robustly reverses aging phenotypes compared with either factor alone. In diverse senescence models, Senoversus restores proliferative capacity, suppresses senescence-associated phenotypes, and maintains a rejuvenated cellular state while preserving cellular identity. In naturally aged mice, Senoversus treatment extends both median and mean lifespan by ~20%, accompanied by systemic improvements in physiological functions. Multi-omics analyses reveal that Senoversus induces coordinated remodeling of aging-associated transcriptional and epigenetic states across multiple organs. Specifically, Senoversus broadly suppresses inflammatory, immune, and other aging-associated signaling pathways while activating pathways involved in metabolism, tissue regeneration, and cellular homeostasis through remodeling of transcription factor regulatory networks and their downstream target genes. Together, our findings establish Senoversus as a pharmacological rejuvenation strategy and provide a promising framework for therapeutic intervention to promote healthy aging.
- 3 July 2026
- Published by Springer Nature in Research Square
Open AccessSenoversus rejuvenates cellular and organismal aging by reversing epigenetic states and restoring transcriptional homeostasis
Anti-aging requires interventions capable of simultaneously targeting multiple aging-associated processes to achieve comprehensive rejuvenation. Here, we report that Senoversus, a dual-factor combination of CHIR99021 and bFGF, robustly reverses aging phenotypes compared with either factor alone. In diverse senescence models, Senoversus restores proliferative capacity, suppresses senescence-associated phenotypes, and maintains a rejuvenated cellular state while preserving cellular identity. In naturally aged mice, Senoversus treatment extends both median and mean lifespan by ~20%, accompanied by systemic improvements in physiological functions. Multi-omics analyses reveal that Senoversus induces coordinated remodeling of aging-associated transcriptional and epigenetic states across multiple organs. Specifically, Senoversus broadly suppresses inflammatory, immune, and other aging-associated signaling pathways while activating pathways involved in metabolism, tissue regeneration, and cellular homeostasis through remodeling of transcription factor regulatory networks and their downstream target genes. Together, our findings establish Senoversus as a pharmacological rejuvenation strategy and provide a promising framework for therapeutic intervention to promote healthy aging.
- Open Access
- 24 November 2025
- Published by American Association for Cancer Research (AACR)
Supplemental Figure Legends from Oncogenic Transformation Drives DNA Methylation Loss and Transcriptional Activation at Transposable Element Loci
Legends for Supplemental Figures S1-S9
- 24 November 2025
- Published by American Association for Cancer Research (AACR)
Open AccessSupplemental Figure Legends from Oncogenic Transformation Drives DNA Methylation Loss and Transcriptional Activation at Transposable Element Loci
Legends for Supplemental Figures S1-S9