Ji-Yen Cheng
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Ji-Yen Cheng has a total of 91 co-authors. Here are the top co-authors by number of shared publications:
Hui-Fang Chang
Academia Sinica
7 shared publicationsPei-Kuen Wei
Research Center for Applied Sciences, Academia Sinica, Taipei, Taiwan
7 shared publicationsTai-Horng Young
Institute of Biomedical Engineering, National Taiwan University, Taipei, Taiwan
7 shared publicationsHuai-Yi Chen
Research Center for Applied Sciences, Academia Sinica, Taipei, Taiwan
6 shared publicationsKuang-Li Lee
Research Center for Applied Sciences, Academia Sinica Taiwan, Taipei, Taiwan
6 shared publicationsMeng-Hua Yen
Institute of Biomedical Engineering, National Taiwan University, Taipei, Taiwan
6 shared publications
Latest Publications
- Open Access
- 11 May 2026
- Published by Elsevier in Sensors and Actuators Reports
- Vol. 11
Deep learning predicts image-based metabolic activity readout from phase-contrast images using MTT formazan color intensity as biochemical validation
- 11 May 2026
- Published by Elsevier in Sensors and Actuators Reports
- Vol. 11
Open AccessDeep learning predicts image-based metabolic activity readout from phase-contrast images using MTT formazan color intensity as biochemical validation
- Open Access
- 2 March 2025
- Published by Wiley in Methods in Ecology and Evolution
Innovative chips for coral cultivation: Enhanced flexibility and experimental applications
Microfluidic systems commenced a new era of coral research, reducing demands for experimental material and minimizing scientific impacts on natural environments. Reduced size also allows continuous microscopy during experiments at unprecedented spatial–temporal resolutions and ensures greater homogeneity of environmental factors among samples. Since the report of the coral‐on‐a‐chip platform in 2016 by Shapiro and colleagues, modifications of coral microfluidic chips have been reported for various experimental purposes. However, existing coral cultivation chips were mostly designed for isolated polyps and for specific experimental setups, limiting their flexibility. Moreover, maintenance of coral health in miniaturized environments has proven challenging, preventing applications of coral chips to experiments with long timescales, which are more relevant to natural environmental events. Here, we present two new coral chips that enable long‐term (over a month), stable coral cultivation in the laboratory without laborious maintenance. Through experiments involving several research topics that are of paramount importance, for example flow speed, heating, osmolarity fluctuation and pathogen inoculation, we tested the applicability of our miniaturized system to coral research. Our results demonstrate the usefulness of our miniaturized system with different experimental objectives. Furthermore, by employing coral microcolonies, that is small coral fragments, our system is suitable for a wider spectrum of corals and is compatible with various analyses, compared to polyp‐based microfluidic systems in previous studies. The miniaturized system presented here considerably extends the applicability of existing coral cultivation chips and provides a convenient, cost‐effective and environmentally friendly platform for future coral studies.
- 2 March 2025
- Published by Wiley in Methods in Ecology and Evolution
Open AccessInnovative chips for coral cultivation: Enhanced flexibility and experimental applications
Microfluidic systems commenced a new era of coral research, reducing demands for experimental material and minimizing scientific impacts on natural environments. Reduced size also allows continuous microscopy during experiments at unprecedented spatial–temporal resolutions and ensures greater homogeneity of environmental factors among samples. Since the report of the coral‐on‐a‐chip platform in 2016 by Shapiro and colleagues, modifications of coral microfluidic chips have been reported for various experimental purposes. However, existing coral cultivation chips were mostly designed for isolated polyps and for specific experimental setups, limiting their flexibility. Moreover, maintenance of coral health in miniaturized environments has proven challenging, preventing applications of coral chips to experiments with long timescales, which are more relevant to natural environmental events. Here, we present two new coral chips that enable long‐term (over a month), stable coral cultivation in the laboratory without laborious maintenance. Through experiments involving several research topics that are of paramount importance, for example flow speed, heating, osmolarity fluctuation and pathogen inoculation, we tested the applicability of our miniaturized system to coral research. Our results demonstrate the usefulness of our miniaturized system with different experimental objectives. Furthermore, by employing coral microcolonies, that is small coral fragments, our system is suitable for a wider spectrum of corals and is compatible with various analyses, compared to polyp‐based microfluidic systems in previous studies. The miniaturized system presented here considerably extends the applicability of existing coral cultivation chips and provides a convenient, cost‐effective and environmentally friendly platform for future coral studies.
- 25 February 2025
- Published by Elsevier in Microchemical Journal
- Vol. 212
Classifying cell viability using a label-free approach: Integration of phase-contrast imaging, Raman spectroscopy, and deep learning
- 25 February 2025
- Published by Elsevier in Microchemical Journal
- Vol. 212
Classifying cell viability using a label-free approach: Integration of phase-contrast imaging, Raman spectroscopy, and deep learning
- 18 December 2024
- Published by Elsevier in International Journal of Biological Macromolecules
- Vol. 290, 138899
A correlation of polymorphic G-quadruplex formation in vitro and in the lysosomes of live cancer cells
- 18 December 2024
- Published by Elsevier in International Journal of Biological Macromolecules
- Vol. 290, 138899
A correlation of polymorphic G-quadruplex formation in vitro and in the lysosomes of live cancer cells
- Open Access
- 25 March 2024
- Published by Elsevier in Biochemistry and Biophysics Reports
- Vol. 38, 101690
Glioblastoma U-87 cell electrotaxis is hindered by doxycycline with a concomitant reduction in the matrix metallopeptidase-9 expression
- 25 March 2024
- Published by Elsevier in Biochemistry and Biophysics Reports
- Vol. 38, 101690
Open AccessGlioblastoma U-87 cell electrotaxis is hindered by doxycycline with a concomitant reduction in the matrix metallopeptidase-9 expression
- 30 May 2023
- Published by Elsevier in Current Opinion in Biotechnology
- Vol. 82, 102952
Miniaturized bioluminescent whole-cell sensor systems
- 30 May 2023
- Published by Elsevier in Current Opinion in Biotechnology
- Vol. 82, 102952
Miniaturized bioluminescent whole-cell sensor systems
- 4 February 2022
- Published by Elsevier in Sensors and Actuators B: Chemical
- Vol. 359, 131540
Rapid printing of a Bacterial array for a Solid-Phase Assay (BacSPA) of heavy metal ions
- 4 February 2022
- Published by Elsevier in Sensors and Actuators B: Chemical
- Vol. 359, 131540
Rapid printing of a Bacterial array for a Solid-Phase Assay (BacSPA) of heavy metal ions
- Open Access
- 1 November 2021
- Published by Springer Nature in Research Square
Response of Human Alveolar Epithelial (hAELVi) Cells to Heavy Metals in Airborne Particulate
In vitro human alveolar models provide a platform to investigate the cellular behavior and activity of human lung cells for toxicity assays. However, there has been relatively rare research on the new human alveolar epithelial cell line (hAELVi) for the toxicity induced by heavy metal ions. In this study, hAELVi cells were exposed to various concentrations of Cd, As, and Zn for 24h. The morphological changes of hAELVi cells were observed after exposure to heavy metals. A high concentration of Cd, As, and Zn led to cell death. However, the cytotoxicity was not reflected by the transepithelial electrical resistance (TEER) value after exposure to 250 μM of As and Zn. In addition, Cd at a concentration of 200 μM induced the significant production of TNF-α whereas As and Zn did not induce observable secretion of the cytokine. On the contrary, a high concentration of Cd, As, and Zn inhibited the production of IL-6. In addition, there is not a direct relationship between the metal ion cytotoxicity and the ROS production in the hAELVi cells. Accordingly, this study contributes to elucidating the cytotoxicity, TEER variation, ROS production, and cytokine secretion of hAELVi cells to acute exposure to heavy metal in vitro. The discrepancy between the cytotoxicity and the TEER result suggests that hAELVi cell cultured on permeable membrane exhibit very different behavior, which is worth pursuing.
- 1 November 2021
- Published by Springer Nature in Research Square
Open AccessResponse of Human Alveolar Epithelial (hAELVi) Cells to Heavy Metals in Airborne Particulate
In vitro human alveolar models provide a platform to investigate the cellular behavior and activity of human lung cells for toxicity assays. However, there has been relatively rare research on the new human alveolar epithelial cell line (hAELVi) for the toxicity induced by heavy metal ions. In this study, hAELVi cells were exposed to various concentrations of Cd, As, and Zn for 24h. The morphological changes of hAELVi cells were observed after exposure to heavy metals. A high concentration of Cd, As, and Zn led to cell death. However, the cytotoxicity was not reflected by the transepithelial electrical resistance (TEER) value after exposure to 250 μM of As and Zn. In addition, Cd at a concentration of 200 μM induced the significant production of TNF-α whereas As and Zn did not induce observable secretion of the cytokine. On the contrary, a high concentration of Cd, As, and Zn inhibited the production of IL-6. In addition, there is not a direct relationship between the metal ion cytotoxicity and the ROS production in the hAELVi cells. Accordingly, this study contributes to elucidating the cytotoxicity, TEER variation, ROS production, and cytokine secretion of hAELVi cells to acute exposure to heavy metal in vitro. The discrepancy between the cytotoxicity and the TEER result suggests that hAELVi cell cultured on permeable membrane exhibit very different behavior, which is worth pursuing.
- 1 October 2021
- Published by Springer Nature
- p. 189-203
Optical Approaches to Visualization of Cellular Activity
- 1 October 2021
- Published by Springer Nature
- p. 189-203
Optical Approaches to Visualization of Cellular Activity
- 14 July 2021
- Published by Royal Society of Chemistry (RSC) in The Analyst
- Vol. 146 (18) , 5584-5591
Dispersion-enhancing surface treatment of AuNPs for a reduced probe loading and detection limit using t-SPR detection
A nanoplasmonic platform for oligonucleotide detection is developed. Functionalized unmodified PEG-Au was used as an SPR signal amplifier. The SPR sensor exhibited high sensitivity with a detection limit of 100 aM. The platform was able to detect a single mismatch sequence.
- 14 July 2021
- Published by Royal Society of Chemistry (RSC) in The Analyst
- Vol. 146 (18) , 5584-5591
Dispersion-enhancing surface treatment of AuNPs for a reduced probe loading and detection limit using t-SPR detection
A nanoplasmonic platform for oligonucleotide detection is developed. Functionalized unmodified PEG-Au was used as an SPR signal amplifier. The SPR sensor exhibited high sensitivity with a detection limit of 100 aM. The platform was able to detect a single mismatch sequence.