Timothy C. Berkelbach
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Timothy C. Berkelbach has a total of 286 co-authors. Here are the top co-authors by number of shared publications:
- Hong-Zhou Ye
Department of Chemistry and Biochemistry, University of Maryland 2 , College Park, Maryland 20742
23 shared publications David R. Reichman
Department of Chemistry, Columbia University, New York, New York10027, United States
9 shared publications- Garnet Kin-Lic Chan
California Institute of Technology
8 shared publications - Xiao Wang
Department of Chemistry and Biochemistry University of California Santa Cruz California USA
8 shared publications Alan M. Lewis
Department of Chemistry and James Franck Institute, University of Chicago, Chicago, Illinois 60637, United States
6 shared publications- David R. Reichman
Columbia University
6 shared publications
Latest Publications
- Open Access
- 4 November 2026
- Published by Royal Society of Chemistry (RSC) in Chemical Science
- Vol. 17 (42) , 20344-20353
Heteroleptic Cr 4+ molecular color center candidates
Increasing halide size in a series of emissive trigonal bipyramidal Cr 4+ complexes increases magnetic anisotropy, decreases emission energy, and increases D-to-linewidth ratios, enabling optical determination of zero-field splitting parameters.
- 4 November 2026
- Published by Royal Society of Chemistry (RSC) in Chemical Science
- Vol. 17 (42) , 20344-20353
Open AccessHeteroleptic Cr 4+ molecular color center candidates
Increasing halide size in a series of emissive trigonal bipyramidal Cr 4+ complexes increases magnetic anisotropy, decreases emission energy, and increases D-to-linewidth ratios, enabling optical determination of zero-field splitting parameters.
- 12 October 2026
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 165 (14)
High-performance parallel implementation of spin-free high-order coupled-cluster theories
High-order coupled-cluster theories with iterative triples (CCSDT), perturbative quadruples [CCSDT(Q)], and iterative quadruples (CCSDTQ) provide benchmark-quality correlation energies, but their steep computational scalings, O(N8), O(N9), and O(N10), together with the large memory requirements of high-order amplitude tensors, have historically limited their application to small molecules. In this work, we develop efficient open-source implementations of spin-restricted CCSDT (RCCSDT), RCCSDT(Q), and RCCSDTQ within the pyscf package and a Message Passing Interface (MPI)-based extension, distributed-cc. The shared-memory implementation combines compact triangular storage of the highest-order amplitude tensors with the multithreaded tensor contraction backend pytblis, enabling efficient use of modern many-core central processing unit (CPU) architectures. This design delivers near-ideal thread scaling up to 90 cores and achieves wall times shorter than or comparable to existing single-node implementations for representative benchmark molecules. We further extend RCCSDT, RCCSDT(Q), and RCCSDTQ to distributed-memory architectures using MPI-based algorithms. By distributing compact high-order amplitudes across MPI ranks and overlapping communication with computation through nonblocking data transfers, the distributed implementation achieves near-ideal strong scaling on up to 32 nodes, corresponding to ∼3000 CPU cores. These developments substantially extend the practical reach of canonical high-order coupled-cluster theory, enabling CCSDT and CCSDT(Q) calculations on systems with ∼100 correlated electrons in 450 orbitals and CCSDTQ calculations on systems with ∼50 correlated electrons in 115 orbitals. Applications to π-stacked noncovalent dimers, the CO dissociation energy of Cr(CO)6, and the Cope rearrangement of semibullvalene demonstrate that canonical high-order coupled-cluster benchmarks are now feasible for chemically realistic molecular systems.
- 12 October 2026
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 165 (14)
High-performance parallel implementation of spin-free high-order coupled-cluster theories
High-order coupled-cluster theories with iterative triples (CCSDT), perturbative quadruples [CCSDT(Q)], and iterative quadruples (CCSDTQ) provide benchmark-quality correlation energies, but their steep computational scalings, O(N8), O(N9), and O(N10), together with the large memory requirements of high-order amplitude tensors, have historically limited their application to small molecules. In this work, we develop efficient open-source implementations of spin-restricted CCSDT (RCCSDT), RCCSDT(Q), and RCCSDTQ within the pyscf package and a Message Passing Interface (MPI)-based extension, distributed-cc. The shared-memory implementation combines compact triangular storage of the highest-order amplitude tensors with the multithreaded tensor contraction backend pytblis, enabling efficient use of modern many-core central processing unit (CPU) architectures. This design delivers near-ideal thread scaling up to 90 cores and achieves wall times shorter than or comparable to existing single-node implementations for representative benchmark molecules. We further extend RCCSDT, RCCSDT(Q), and RCCSDTQ to distributed-memory architectures using MPI-based algorithms. By distributing compact high-order amplitudes across MPI ranks and overlapping communication with computation through nonblocking data transfers, the distributed implementation achieves near-ideal strong scaling on up to 32 nodes, corresponding to ∼3000 CPU cores. These developments substantially extend the practical reach of canonical high-order coupled-cluster theory, enabling CCSDT and CCSDT(Q) calculations on systems with ∼100 correlated electrons in 450 orbitals and CCSDTQ calculations on systems with ∼50 correlated electrons in 115 orbitals. Applications to π-stacked noncovalent dimers, the CO dissociation energy of Cr(CO)6, and the Cope rearrangement of semibullvalene demonstrate that canonical high-order coupled-cluster benchmarks are now feasible for chemically realistic molecular systems.
- 6 October 2026
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 165 (13)
Adsorption energies and decomposition barrier heights for ethylene carbonate on the surface of lithium from cluster-based quantum chemistry
For ethylene carbonate on the (100) surface of lithium, we calculate the adsorption energy in two binding motifs and the barrier height for a ring-opening decomposition reaction. We validate a scheme for producing results in the thermodynamic limit by correcting results obtained on finite lithium clusters containing only 40–100 atoms, which enables the use of hybrid density functionals, random-phase approximation, and correlated wavefunction theories, such as coupled-cluster theory and auxiliary-field quantum Monte Carlo. We find that the high-level theories agree to within 2–5 kcal/mol and can, therefore, serve as benchmarks for more affordable methods. Using our reference data, we demonstrate that generalized gradient approximation functionals, such as PBE, are not sufficiently accurate for reaction barrier heights, and we identify ωB97X-V as an especially promising functional for the interfacial chemistry of electrolyte solvents at lithium metal anodes.
- 6 October 2026
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 165 (13)
Adsorption energies and decomposition barrier heights for ethylene carbonate on the surface of lithium from cluster-based quantum chemistry
For ethylene carbonate on the (100) surface of lithium, we calculate the adsorption energy in two binding motifs and the barrier height for a ring-opening decomposition reaction. We validate a scheme for producing results in the thermodynamic limit by correcting results obtained on finite lithium clusters containing only 40–100 atoms, which enables the use of hybrid density functionals, random-phase approximation, and correlated wavefunction theories, such as coupled-cluster theory and auxiliary-field quantum Monte Carlo. We find that the high-level theories agree to within 2–5 kcal/mol and can, therefore, serve as benchmarks for more affordable methods. Using our reference data, we demonstrate that generalized gradient approximation functionals, such as PBE, are not sufficiently accurate for reaction barrier heights, and we identify ωB97X-V as an especially promising functional for the interfacial chemistry of electrolyte solvents at lithium metal anodes.
- 10 September 2026
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 165 (10)
The Python simulations of chemistry framework: 10 years of an open-source quantum chemistry project
Over the past decade, the Python-based Simulations of Chemistry Framework (PySCF) has developed into a widely used open-source platform for electronic-structure theory and quantum chemical method development. This article reviews the major advances since the previous overview in 2020, covering new modules and methodology, infrastructure changes, and performance benchmarks.
- 10 September 2026
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 165 (10)
The Python simulations of chemistry framework: 10 years of an open-source quantum chemistry project
Over the past decade, the Python-based Simulations of Chemistry Framework (PySCF) has developed into a widely used open-source platform for electronic-structure theory and quantum chemical method development. This article reviews the major advances since the previous overview in 2020, covering new modules and methodology, infrastructure changes, and performance benchmarks.
- Open Access
- 8 September 2026
- Published by American Chemical Society (ACS) in ACS Central Science
- Vol. 12 (9) , 1284-1286
Solid-State Point Defects through a Molecular Lens
- 8 September 2026
- Published by American Chemical Society (ACS) in ACS Central Science
- Vol. 12 (9) , 1284-1286
Open AccessSolid-State Point Defects through a Molecular Lens
- 16 April 2026
- Published by American Chemical Society (ACS) in Journal of Chemical Theory and Computation
- Vol. 22 (8) , 3851-3859
Markov State Models for Tracking Reaction Dynamics on Catalytic Nanoparticles
Markov state models (MSMs) are a powerful tool to analyze and coarse-grain complex dynamical data into interpretable kinetic processes. This capability is particularly important in heterogeneous catalysis, where a medley of reactants and intermediates interact on surfaces that might simultaneously experience structural fluctuations. For these very complex systems, standard transition state theory (TST) approaches are no longer appropriate, motivating alternative approaches that can retain dynamical complexity while providing physical insight. With machine-learned interatomic potentials being more and more ubiquitous, directly simulating complex catalytic systems with molecular dynamics (MD) is becoming increasingly feasible. Extending MSMs to dynamically coarse-grain MD simulation data of catalytic processes, we analyze hydrogen dynamics on rhodium catalysts with slab and nanoparticle geometries over a range of hydrogen surface concentrations. Nanoparticle features, such as corners and edges, effectively slow down the association/dissociation process, and the cooperative behavior of hydrogen-hydrogen interactions leads to a nonmonotonic concentration dependence of the rates, which would not be predicted with standard TST.
- 16 April 2026
- Published by American Chemical Society (ACS) in Journal of Chemical Theory and Computation
- Vol. 22 (8) , 3851-3859
Markov State Models for Tracking Reaction Dynamics on Catalytic Nanoparticles
Markov state models (MSMs) are a powerful tool to analyze and coarse-grain complex dynamical data into interpretable kinetic processes. This capability is particularly important in heterogeneous catalysis, where a medley of reactants and intermediates interact on surfaces that might simultaneously experience structural fluctuations. For these very complex systems, standard transition state theory (TST) approaches are no longer appropriate, motivating alternative approaches that can retain dynamical complexity while providing physical insight. With machine-learned interatomic potentials being more and more ubiquitous, directly simulating complex catalytic systems with molecular dynamics (MD) is becoming increasingly feasible. Extending MSMs to dynamically coarse-grain MD simulation data of catalytic processes, we analyze hydrogen dynamics on rhodium catalysts with slab and nanoparticle geometries over a range of hydrogen surface concentrations. Nanoparticle features, such as corners and edges, effectively slow down the association/dissociation process, and the cooperative behavior of hydrogen-hydrogen interactions leads to a nonmonotonic concentration dependence of the rates, which would not be predicted with standard TST.
- Open Access
- 25 February 2026
- Published by American Physical Society (APS) in Physical Review Research
- Vol. 8 (1)
Improved energies and local energies with weighted variational Monte Carlo
Neural network parametrizations have increasingly been used to represent the ground and excited states in variational Monte Carlo (VMC) with promising results. However, traditional VMC methods only optimize the wave function in regions of peak probability. The wave function is uncontrolled in the tails of the probability distribution, which can limit the accuracy of the trained wave function. To improve the approximation accuracy in the probability tails, this paper interprets VMC as a gradient flow in the space of wave functions, followed by a projection step. From this perspective, arbitrary probability distributions can be used in the projection step, allowing the user to prioritize accuracy in different regions of state space. Motivated by this theoretical perspective, the paper tests a weighted VMC method on the antiferromagnetic Heisenberg model for a periodic spin chain. Compared to traditional VMC, weighted VMC reduces the error in the ground state energy by a factor of 2, and it reduces the errors in the local energies away from the mode by large factors of 10 2 – 10 4 .
- 25 February 2026
- Published by American Physical Society (APS) in Physical Review Research
- Vol. 8 (1)
Open AccessImproved energies and local energies with weighted variational Monte Carlo
Neural network parametrizations have increasingly been used to represent the ground and excited states in variational Monte Carlo (VMC) with promising results. However, traditional VMC methods only optimize the wave function in regions of peak probability. The wave function is uncontrolled in the tails of the probability distribution, which can limit the accuracy of the trained wave function. To improve the approximation accuracy in the probability tails, this paper interprets VMC as a gradient flow in the space of wave functions, followed by a projection step. From this perspective, arbitrary probability distributions can be used in the projection step, allowing the user to prioritize accuracy in different regions of state space. Motivated by this theoretical perspective, the paper tests a weighted VMC method on the antiferromagnetic Heisenberg model for a periodic spin chain. Compared to traditional VMC, weighted VMC reduces the error in the ground state energy by a factor of 2, and it reduces the errors in the local energies away from the mode by large factors of 10 2 – 10 4 .
- 8 January 2026
- Published by American Chemical Society (ACS) in Journal of Chemical Theory and Computation
- Vol. 22 (2) , 940-951
Size-Consistent Adiabatic Connection Functionals via Orbital-Based Matrix Interpolation
We introduce a size-consistent and orbital-invariant formalism for constructing correlation functionals based on the adiabatic connection for density functional theory (DFT). By constructing correlation energy matrices for the weak and strong correlation limits in the space of occupied orbitals, our method, which we call orbital-based size-consistent matrix interpolation (OSMI), avoids previous difficulties in the construction of size-consistent adiabatic connection functionals. We design a simple, nonempirical adiabatic connection and a one-parameter strong-interaction limit functional, and we show that the resulting method reproduces the correlation energy of the uniform electron gas over a wide range of densities. When applied to subsets of the GMTKN55 thermochemistry database, OSMI is more accurate on average than MP2 and nonempirical density functionals. Most notably, OSMI provides excellent predictions of the barrier heights we tested, with average errors of less than 2 kcal mol-1. Finally, we find that OSMI improves the trade-off between fractional spin and fractional charge errors for bond dissociation curves compared to DFT and MP2. The fact that OSMI provides a good description of molecular systems and the uniform electron gas, while also maintaining low self-interaction error and size-consistency, suggests that it could provide a framework for studying heterogeneous chemical systems.
- 8 January 2026
- Published by American Chemical Society (ACS) in Journal of Chemical Theory and Computation
- Vol. 22 (2) , 940-951
Size-Consistent Adiabatic Connection Functionals via Orbital-Based Matrix Interpolation
We introduce a size-consistent and orbital-invariant formalism for constructing correlation functionals based on the adiabatic connection for density functional theory (DFT). By constructing correlation energy matrices for the weak and strong correlation limits in the space of occupied orbitals, our method, which we call orbital-based size-consistent matrix interpolation (OSMI), avoids previous difficulties in the construction of size-consistent adiabatic connection functionals. We design a simple, nonempirical adiabatic connection and a one-parameter strong-interaction limit functional, and we show that the resulting method reproduces the correlation energy of the uniform electron gas over a wide range of densities. When applied to subsets of the GMTKN55 thermochemistry database, OSMI is more accurate on average than MP2 and nonempirical density functionals. Most notably, OSMI provides excellent predictions of the barrier heights we tested, with average errors of less than 2 kcal mol-1. Finally, we find that OSMI improves the trade-off between fractional spin and fractional charge errors for bond dissociation curves compared to DFT and MP2. The fact that OSMI provides a good description of molecular systems and the uniform electron gas, while also maintaining low self-interaction error and size-consistency, suggests that it could provide a framework for studying heterogeneous chemical systems.
- Open Access
Size-Consistent Adiabatic Connection Functionals via Orbital-Based Matrix Interpolation
We introduce a size-consistent and orbital-invariant formalism for constructing correlation functionals based on the adiabatic connection for density functional theory (DFT). By constructing correlation energy matrices for the weak and strong correlation limits in the space of occupied orbitals, our method, which we call orbital-based size-consistent matrix interpolation (OSMI), avoids previous difficulties in the construction of size-consistent adiabatic connection functionals. We design a simple, nonempirical adiabatic connection and a one-parameter strong-interaction limit functional, and we show that the resulting method reproduces the correlation energy of the uniform electron gas over a wide range of densities. When applied to subsets of the GMTKN55 thermochemistry database, OSMI is more accurate on average than MP2 and nonempirical density functionals. Most notably, OSMI provides excellent predictions of the barrier heights we tested, with average errors of less than 2 kcal mol$^{-1}$. Finally, we find that OSMI improves the trade-off between fractional spin and fractional charge errors for bond dissociation curves compared to DFT and MP2. The fact that OSMI provides a good description of molecular systems and the uniform electron gas, while also maintaining low self-interaction error and size-consistency, suggests that it could provide a framework for studying heterogeneous chemical systems.
Open AccessSize-Consistent Adiabatic Connection Functionals via Orbital-Based Matrix Interpolation
We introduce a size-consistent and orbital-invariant formalism for constructing correlation functionals based on the adiabatic connection for density functional theory (DFT). By constructing correlation energy matrices for the weak and strong correlation limits in the space of occupied orbitals, our method, which we call orbital-based size-consistent matrix interpolation (OSMI), avoids previous difficulties in the construction of size-consistent adiabatic connection functionals. We design a simple, nonempirical adiabatic connection and a one-parameter strong-interaction limit functional, and we show that the resulting method reproduces the correlation energy of the uniform electron gas over a wide range of densities. When applied to subsets of the GMTKN55 thermochemistry database, OSMI is more accurate on average than MP2 and nonempirical density functionals. Most notably, OSMI provides excellent predictions of the barrier heights we tested, with average errors of less than 2 kcal mol$^{-1}$. Finally, we find that OSMI improves the trade-off between fractional spin and fractional charge errors for bond dissociation curves compared to DFT and MP2. The fact that OSMI provides a good description of molecular systems and the uniform electron gas, while also maintaining low self-interaction error and size-consistency, suggests that it could provide a framework for studying heterogeneous chemical systems.
- Open Access
Reaction dynamics of lithium-mediated electrolyte decomposition using machine learning potentials
We study the ring-opening decomposition of ethylene carbonate in the presence of a single lithium atom and on the surface of lithium metal. Combining accurate electronic structure theory, enhanced sampling, and machine learning, we fine-tune the MACE-MP0 foundation model and apply the resulting machine learning potentials to obtain statistically converged free energy profiles and reaction rates. We confirm that the level of electronic structure theory is important, and inaccurate density functionals can overestimate the reaction rate by up to nine orders of magnitude. We also find that harmonic transition state theory underestimates reaction rates by about one order of magnitude. For the surface reaction, we find and characterize a new, ultrafast decomposition pathway wherein the carbonyl is deeply inserted into the lithium surface and bent by about 70$^\circ$. This reaction, which occurs in a few tens of picoseconds, generates a ring-opened intermediate that is a precursor for CO or CO$_2$ formation; by contrast, an alternative pathway that yields CO$_3^{2-}$ and ethylene is found to be non-competitive, occurring on a timescale of tens of nanoseconds.
Open AccessReaction dynamics of lithium-mediated electrolyte decomposition using machine learning potentials
We study the ring-opening decomposition of ethylene carbonate in the presence of a single lithium atom and on the surface of lithium metal. Combining accurate electronic structure theory, enhanced sampling, and machine learning, we fine-tune the MACE-MP0 foundation model and apply the resulting machine learning potentials to obtain statistically converged free energy profiles and reaction rates. We confirm that the level of electronic structure theory is important, and inaccurate density functionals can overestimate the reaction rate by up to nine orders of magnitude. We also find that harmonic transition state theory underestimates reaction rates by about one order of magnitude. For the surface reaction, we find and characterize a new, ultrafast decomposition pathway wherein the carbonyl is deeply inserted into the lithium surface and bent by about 70$^\circ$. This reaction, which occurs in a few tens of picoseconds, generates a ring-opened intermediate that is a precursor for CO or CO$_2$ formation; by contrast, an alternative pathway that yields CO$_3^{2-}$ and ethylene is found to be non-competitive, occurring on a timescale of tens of nanoseconds.