Poul Martin Bendix
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Interests
Poul Martin Bendix has a total of 178 co-authors. Here are the top co-authors by number of shared publications:
- Lene Broeng Oddershede
Niels Bohr Institute
36 shared publications - Guillermo Moreno-Pescador
Niels Bohr Institute, University of Copenhagen, Blegdamsvej 17, 2100 København Ø, Denmark
10 shared publications - Jesper Nylandsted
Danish Cancer Institute, Copenhagen, Denmark
8 shared publications - Younes Farhangi Barooji
Biocomplexity, Niels Bohr Institute, Faculty of Science, University of Copenhagen, 2200 Copenhagen, Denmark
8 shared publications - Anders Kyrsting
Department of Physiology, Development and Neuroscience, University of Cambridge
7 shared publications Azra Bahadori
Center for Chromosome Stability, University of Copenhagen, Blegdamsvej 3B, 2200 København N, Denmark
7 shared publications
Latest Publications
- Open Access
Inward and Outward Tethers Read Out the Spontaneous Curvature of Cellular Membranes
Spontaneous curvature characterizes the propensity of a membrane to bend in a specific direction. It is therefore crucial in the multitude of cellular processes that involve membrane shape remodelling. Yet, experimentally quantifying the spontaneous curvature remains a significant challenge in complex biological membranes, as their heterogeneity causes ambiguities in spontaneous curvature's physical interpretation. Here, we introduce a general experiment-simulation framework to measure an effective spontaneous curvature using dual-direction tether pulling from cell-attached giant plasma membrane vesicles (GPMVs) and mesoscale simulations. For homogeneous membranes, the force difference between inward and outward pulls yields a tension-independent readout of spontaneous curvature. We show that this continuum observable can be generalized to the mean of the spontaneous curvature in a heterogeneous membrane, independent of the underlying microscopic spontaneous curvature distribution. Applied to HEK-derived GPMVs, a baseline negative spontaneous curvature of the plasma membrane is revealed. Sucrose treatment and extracellular addition of Annexin A5 systematically shift the effective spontaneous curvature, while mucin reporter overexpression does not measurably alter it under the conditions tested. We also measure the curvature imprint of individual fluorescently tagged proteins through a sorting index. Benchmarked with Annexin A5, our scheme recovers curvature imprints very similar to previous atomistic molecular dynamics simulations. Taken together this makes spontaneous curvature accessible as a directly measurable material property of native membranes and membrane-proteins, enabling quantitative studies of membrane remodelling across diverse cellular processes.
Open AccessInward and Outward Tethers Read Out the Spontaneous Curvature of Cellular Membranes
Spontaneous curvature characterizes the propensity of a membrane to bend in a specific direction. It is therefore crucial in the multitude of cellular processes that involve membrane shape remodelling. Yet, experimentally quantifying the spontaneous curvature remains a significant challenge in complex biological membranes, as their heterogeneity causes ambiguities in spontaneous curvature's physical interpretation. Here, we introduce a general experiment-simulation framework to measure an effective spontaneous curvature using dual-direction tether pulling from cell-attached giant plasma membrane vesicles (GPMVs) and mesoscale simulations. For homogeneous membranes, the force difference between inward and outward pulls yields a tension-independent readout of spontaneous curvature. We show that this continuum observable can be generalized to the mean of the spontaneous curvature in a heterogeneous membrane, independent of the underlying microscopic spontaneous curvature distribution. Applied to HEK-derived GPMVs, a baseline negative spontaneous curvature of the plasma membrane is revealed. Sucrose treatment and extracellular addition of Annexin A5 systematically shift the effective spontaneous curvature, while mucin reporter overexpression does not measurably alter it under the conditions tested. We also measure the curvature imprint of individual fluorescently tagged proteins through a sorting index. Benchmarked with Annexin A5, our scheme recovers curvature imprints very similar to previous atomistic molecular dynamics simulations. Taken together this makes spontaneous curvature accessible as a directly measurable material property of native membranes and membrane-proteins, enabling quantitative studies of membrane remodelling across diverse cellular processes.
- Open Access
Actin cross-linking organizes basal body patterning through anomalous diffusion transitions
Subcellular protein complexes and organelles exhibit diverse dynamic behaviors that reflect the mechanical constraints and organization of the intracellular environment. Although some structures follow classical Brownian motion, many display anomalous dynamics, including subdiffusion and superdiffusion, driven by viscoelasticity, molecular crowding, and cytoskeletal interactions. Transitions between these regimes are increasingly recognized as critical for subcellular organization, yet how they are regulated and influence pattern formation remains unclear. Here, we investigate the spatial arrangement of cilia on the apical surface of multiciliated cells (MCCs) in developing Xenopus laevis embryos, where coordinated ciliary beating depends on the precise organization of hundreds of centriole-derived basal bodies (BBs). Using quantitative confocal, high-resolution and high-speed TIRF imaging together with theoretical modeling, we show that BB trajectories undergo time-resolved transitions between diffusive and anomalous motion, with distinct regimes that correlate with apical surface expansion. During the early stages, actin remodeling facilitates the dispersal of BBs by providing a permissive, low-confinement environment. As development progresses, the actin network becomes increasingly cross-linked, forming a dense meshwork that constrains BB movement and promotes uniform spacing across the apical domain. Disruption of α -actinin-1, a major actin cross-linking protein, impairs the integrity of the apical actin meshwork, weakens BB confinement, and disrupts regular spatial patterning, ultimately compromising the spatial arrangement of BBs required for proper cilia alignment. Together, we show that progressive apical actin cross-linking coordinates BB positioning and regulates their dynamic state, guiding the shift from diffusive to confined motion. This transition in dynamics enables the emergence of a uniform BB pattern, which in turn ensures the aligned deployment of motile cilia necessary for effective directional fluid flow.
Open AccessActin cross-linking organizes basal body patterning through anomalous diffusion transitions
Subcellular protein complexes and organelles exhibit diverse dynamic behaviors that reflect the mechanical constraints and organization of the intracellular environment. Although some structures follow classical Brownian motion, many display anomalous dynamics, including subdiffusion and superdiffusion, driven by viscoelasticity, molecular crowding, and cytoskeletal interactions. Transitions between these regimes are increasingly recognized as critical for subcellular organization, yet how they are regulated and influence pattern formation remains unclear. Here, we investigate the spatial arrangement of cilia on the apical surface of multiciliated cells (MCCs) in developing Xenopus laevis embryos, where coordinated ciliary beating depends on the precise organization of hundreds of centriole-derived basal bodies (BBs). Using quantitative confocal, high-resolution and high-speed TIRF imaging together with theoretical modeling, we show that BB trajectories undergo time-resolved transitions between diffusive and anomalous motion, with distinct regimes that correlate with apical surface expansion. During the early stages, actin remodeling facilitates the dispersal of BBs by providing a permissive, low-confinement environment. As development progresses, the actin network becomes increasingly cross-linked, forming a dense meshwork that constrains BB movement and promotes uniform spacing across the apical domain. Disruption of α -actinin-1, a major actin cross-linking protein, impairs the integrity of the apical actin meshwork, weakens BB confinement, and disrupts regular spatial patterning, ultimately compromising the spatial arrangement of BBs required for proper cilia alignment. Together, we show that progressive apical actin cross-linking coordinates BB positioning and regulates their dynamic state, guiding the shift from diffusive to confined motion. This transition in dynamics enables the emergence of a uniform BB pattern, which in turn ensures the aligned deployment of motile cilia necessary for effective directional fluid flow.
- Open Access
Direct tensile force activates Adgrl3 in a tethered agonist-dependent manner
Adhesion G protein-coupled receptors are proposed to function as mechanosensors, yet whether controlled mechanical force can directly activate receptor signaling in living cells remains unclear. Using optical tweezers, we demonstrate that direct tensile force applied to the N-terminus of the adhesion GPCR Adgrl3 is sufficient to induce G protein recruitment in living cells. Activation is direction-specific, requires a functional tethered agonist, and aligns with coexisting force-driven GAIN-domain conformational changes and dissociation.
Open AccessDirect tensile force activates Adgrl3 in a tethered agonist-dependent manner
Adhesion G protein-coupled receptors are proposed to function as mechanosensors, yet whether controlled mechanical force can directly activate receptor signaling in living cells remains unclear. Using optical tweezers, we demonstrate that direct tensile force applied to the N-terminus of the adhesion GPCR Adgrl3 is sufficient to induce G protein recruitment in living cells. Activation is direction-specific, requires a functional tethered agonist, and aligns with coexisting force-driven GAIN-domain conformational changes and dissociation.
- 4 July 2024
- Published by Elsevier in Trends in Cell Biology
- Vol. 35 (2) , 129-140
Filopodia: integrating cellular functions with theoretical models
- 4 July 2024
- Published by Elsevier in Trends in Cell Biology
- Vol. 35 (2) , 129-140
Filopodia: integrating cellular functions with theoretical models
- 19 January 2024
- Published by MyJove Corporation in Journal of Visualized Experiments
- No. 203,p. e65776
A Thermoplasmonic Approach for Investigating Plasma Membrane Repair in Living Cells and Model Membranes
The cell membrane is crucial for cell survival, and ensuring its integrity is essential as the cell experiences injuries throughout its entire life cycle. To prevent damage to the membrane, cells have developed efficient plasma membrane repair mechanisms. These repair mechanisms can be studied by combining confocal microscopy and nanoscale thermoplasmonics to identify and investigate the role of key proteins, such as annexins, involved in surface repair in living cells and membrane model systems. The puncturing method employs a laser to induce highly localized heating upon nanoparticle irradiation. The use of near-infrared light minimizes phototoxicity in the biological sample, while the majority of the absorption takes place in the near-infrared resonant plasmonic nanoparticle. This thermoplasmonic method has been exploited for potential photothermal and biophysical research to enhance the understanding of intracellular mechanisms and cellular responses through vesicle and cell fusion studies. The approach has shown to be complementary to existing methods for membrane disruption, such as mechanically, chemically, or optically induced injuries, and provides a high level of control by inflicting extremely localized injuries. The extent of the injury is limited to the vicinity of the spherical nanoparticle, and no detrimental damage occurs along the beam path as opposed to pulsed lasers using different wavelengths. Despite certain limitations, such as the formation of nanobubbles, the thermoplasmonic method offers a unique tool for investigating cellular responses in plasma membrane repair in an almost native environment without compromising cell viability. When integrated with confocal microscopy, the puncturing method can provide a mechanistic understanding of membrane dynamics in model membrane systems as well as quantitative information on protein responses to membrane damage, including protein recruitment and their biophysical function. Overall, the application of this method to reduced model systems can enhance our understanding of the intricate plasma membrane repair machinery in living cells.
- 19 January 2024
- Published by MyJove Corporation in Journal of Visualized Experiments
- No. 203,p. e65776
A Thermoplasmonic Approach for Investigating Plasma Membrane Repair in Living Cells and Model Membranes
The cell membrane is crucial for cell survival, and ensuring its integrity is essential as the cell experiences injuries throughout its entire life cycle. To prevent damage to the membrane, cells have developed efficient plasma membrane repair mechanisms. These repair mechanisms can be studied by combining confocal microscopy and nanoscale thermoplasmonics to identify and investigate the role of key proteins, such as annexins, involved in surface repair in living cells and membrane model systems. The puncturing method employs a laser to induce highly localized heating upon nanoparticle irradiation. The use of near-infrared light minimizes phototoxicity in the biological sample, while the majority of the absorption takes place in the near-infrared resonant plasmonic nanoparticle. This thermoplasmonic method has been exploited for potential photothermal and biophysical research to enhance the understanding of intracellular mechanisms and cellular responses through vesicle and cell fusion studies. The approach has shown to be complementary to existing methods for membrane disruption, such as mechanically, chemically, or optically induced injuries, and provides a high level of control by inflicting extremely localized injuries. The extent of the injury is limited to the vicinity of the spherical nanoparticle, and no detrimental damage occurs along the beam path as opposed to pulsed lasers using different wavelengths. Despite certain limitations, such as the formation of nanobubbles, the thermoplasmonic method offers a unique tool for investigating cellular responses in plasma membrane repair in an almost native environment without compromising cell viability. When integrated with confocal microscopy, the puncturing method can provide a mechanistic understanding of membrane dynamics in model membrane systems as well as quantitative information on protein responses to membrane damage, including protein recruitment and their biophysical function. Overall, the application of this method to reduced model systems can enhance our understanding of the intricate plasma membrane repair machinery in living cells.
- Open Access
- 6 January 2024
- Published by American Chemical Society (ACS) in Nano Letters
- Vol. 24 (3) , 777-789
Biological Applications of Thermoplasmonics
Thermoplasmonics has emerged as an extraordinarily versatile tool with profound applications across various biological domains ranging from medical science to cell biology and biophysics. The key feature of nanoscale plasmonic heating involves remote activation of heating by applying laser irradiation to plasmonic nanostructures that are designed to optimally convert light into heat. This unique capability paves the way for a diverse array of applications, facilitating the exploration of critical biological processes such as cell differentiation, repair, signaling, and protein functionality, and the advancement of biosensing techniques. Of particular significance is the rapid heat cycling that can be achieved through thermoplasmonics, which has ushered in remarkable technical innovations such as accelerated amplification of DNA through quantitative reverse transcription polymerase chain reaction. Finally, medical applications of photothermal therapy have recently completed clinical trials with remarkable results in prostate cancer, which will inevitably lead to the implementation of photothermal therapy for a number of diseases in the future. Within this review, we offer a survey of the latest advancements in the burgeoning field of thermoplasmonics, with a keen emphasis on its transformative applications within the realm of biosciences.
- 6 January 2024
- Published by American Chemical Society (ACS) in Nano Letters
- Vol. 24 (3) , 777-789
Open AccessBiological Applications of Thermoplasmonics
Thermoplasmonics has emerged as an extraordinarily versatile tool with profound applications across various biological domains ranging from medical science to cell biology and biophysics. The key feature of nanoscale plasmonic heating involves remote activation of heating by applying laser irradiation to plasmonic nanostructures that are designed to optimally convert light into heat. This unique capability paves the way for a diverse array of applications, facilitating the exploration of critical biological processes such as cell differentiation, repair, signaling, and protein functionality, and the advancement of biosensing techniques. Of particular significance is the rapid heat cycling that can be achieved through thermoplasmonics, which has ushered in remarkable technical innovations such as accelerated amplification of DNA through quantitative reverse transcription polymerase chain reaction. Finally, medical applications of photothermal therapy have recently completed clinical trials with remarkable results in prostate cancer, which will inevitably lead to the implementation of photothermal therapy for a number of diseases in the future. Within this review, we offer a survey of the latest advancements in the burgeoning field of thermoplasmonics, with a keen emphasis on its transformative applications within the realm of biosciences.
- Open Access
Quantitative Determination of Protein Concentrations in Living Cells
Biological systems are regulated by molecular interactions which are tuned by the concentrations of each of the molecules involved. Cells exploit this feature by regulating protein expression, to adapt their responses to overstimulation. Correlating events in single cells to the concentrations of proteins involved can therefore provide important mechanistic insight into cell behavior. Unfortunately, quantification of molecular densities by fluorescence imaging becomes non-trivial due to the diffraction limited resolution of the imaged volume. We show here an alternative approach to overcome this limitation in optical quantification of protein concentrations which is based on calibrating protein volume and surface densities in a model membrane system. We exploit the ability of fluorescently labeled annexin V to bind membranes in presence of calcium. By encapsulating known concentrations of annexin V, we can directly infer the membrane density of annexin V after addition of Ca2+ and correlate the density with the measured fluorescence signal. Our method, named Calmet, enables quantitative determination of the concentration of cytosolic and membrane associated proteins. The applicability of Calmet is demonstrated by quantification of a transmembrane protein receptor (beta 1 adrenergic receptor) labeled by SNAP tagged fluorophores and expressed in HEK293 cells. Calmet is a generic method suitable for the determination of a broad range of concentrations and densities and can be used on regular fluorescence images captured by confocal laser scanning microscopy.
Open AccessQuantitative Determination of Protein Concentrations in Living Cells
Biological systems are regulated by molecular interactions which are tuned by the concentrations of each of the molecules involved. Cells exploit this feature by regulating protein expression, to adapt their responses to overstimulation. Correlating events in single cells to the concentrations of proteins involved can therefore provide important mechanistic insight into cell behavior. Unfortunately, quantification of molecular densities by fluorescence imaging becomes non-trivial due to the diffraction limited resolution of the imaged volume. We show here an alternative approach to overcome this limitation in optical quantification of protein concentrations which is based on calibrating protein volume and surface densities in a model membrane system. We exploit the ability of fluorescently labeled annexin V to bind membranes in presence of calcium. By encapsulating known concentrations of annexin V, we can directly infer the membrane density of annexin V after addition of Ca2+ and correlate the density with the measured fluorescence signal. Our method, named Calmet, enables quantitative determination of the concentration of cytosolic and membrane associated proteins. The applicability of Calmet is demonstrated by quantification of a transmembrane protein receptor (beta 1 adrenergic receptor) labeled by SNAP tagged fluorophores and expressed in HEK293 cells. Calmet is a generic method suitable for the determination of a broad range of concentrations and densities and can be used on regular fluorescence images captured by confocal laser scanning microscopy.
- Open Access
- 22 May 2023
- Published by Frontiers Media SA in Frontiers in Plant Science
- Vol. 14
Label-free optical interferometric microscopy to characterize morphodynamics in living plants
During the last century, fluorescence microscopy has played a pivotal role in a range of scientific discoveries. The success of fluorescence microscopy has prevailed despite several shortcomings like measurement time, photobleaching, temporal resolution, and specific sample preparation. To bypass these obstacles, label-free interferometric methods have been developed. Interferometry exploits the full wavefront information of laser light after interaction with biological material to yield interference patterns that contain information about structure and activity. Here, we review recent studies in interferometric imaging of plant cells and tissues, using techniques such as biospeckle imaging, optical coherence tomography, and digital holography. These methods enable quantification of cell morphology and dynamic intracellular measurements over extended periods of time. Recent investigations have showcased the potential of interferometric techniques for precise identification of seed viability and germination, plant diseases, plant growth and cell texture, intracellular activity and cytoplasmic transport. We envision that further developments of these label-free approaches, will allow for high-resolution, dynamic imaging of plants and their organelles, ranging in scales from sub-cellular to tissue and from milliseconds to hours.
- 22 May 2023
- Published by Frontiers Media SA in Frontiers in Plant Science
- Vol. 14
Open AccessLabel-free optical interferometric microscopy to characterize morphodynamics in living plants
During the last century, fluorescence microscopy has played a pivotal role in a range of scientific discoveries. The success of fluorescence microscopy has prevailed despite several shortcomings like measurement time, photobleaching, temporal resolution, and specific sample preparation. To bypass these obstacles, label-free interferometric methods have been developed. Interferometry exploits the full wavefront information of laser light after interaction with biological material to yield interference patterns that contain information about structure and activity. Here, we review recent studies in interferometric imaging of plant cells and tissues, using techniques such as biospeckle imaging, optical coherence tomography, and digital holography. These methods enable quantification of cell morphology and dynamic intracellular measurements over extended periods of time. Recent investigations have showcased the potential of interferometric techniques for precise identification of seed viability and germination, plant diseases, plant growth and cell texture, intracellular activity and cytoplasmic transport. We envision that further developments of these label-free approaches, will allow for high-resolution, dynamic imaging of plants and their organelles, ranging in scales from sub-cellular to tissue and from milliseconds to hours.
- Open Access
- 11 April 2023
- Published by American Chemical Society (ACS) in Nano Letters
- Vol. 23 (8) , 3377-3384
Thermoplasmonic Vesicle Fusion Reveals Membrane Phase Segregation of Influenza Spike Proteins
- 11 April 2023
- Published by American Chemical Society (ACS) in Nano Letters
- Vol. 23 (8) , 3377-3384
Open AccessThermoplasmonic Vesicle Fusion Reveals Membrane Phase Segregation of Influenza Spike Proteins
- Open Access
- 16 January 2023
- Published by Portland Press Ltd. in Emerging Topics in Life Sciences
- Vol. 7 (1) , 81-93
Close, but not too close: a mesoscopic description of (a)symmetry and membrane shaping mechanisms
Biomembranes are fundamental to our understanding of the cell, the basic building block of all life. An intriguing aspect of membranes is their ability to assume a variety of shapes, which is crucial for cell function. Here, we review various membrane shaping mechanisms with special focus on the current understanding of how local curvature and local rigidity induced by membrane proteins leads to emerging forces and consequently large-scale membrane deformations. We also argue that describing the interaction of rigid proteins with membranes purely in terms of local membrane curvature is incomplete and that changes in the membrane rigidity moduli must also be considered.
- 16 January 2023
- Published by Portland Press Ltd. in Emerging Topics in Life Sciences
- Vol. 7 (1) , 81-93
Open AccessClose, but not too close: a mesoscopic description of (a)symmetry and membrane shaping mechanisms
Biomembranes are fundamental to our understanding of the cell, the basic building block of all life. An intriguing aspect of membranes is their ability to assume a variety of shapes, which is crucial for cell function. Here, we review various membrane shaping mechanisms with special focus on the current understanding of how local curvature and local rigidity induced by membrane proteins leads to emerging forces and consequently large-scale membrane deformations. We also argue that describing the interaction of rigid proteins with membranes purely in terms of local membrane curvature is incomplete and that changes in the membrane rigidity moduli must also be considered.