Quang Duy Pham
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Quang Duy Pham has a total of 171 co-authors. Here are the top co-authors by number of shared publications:
- Thuong Vu Nguyen
Pasteur Institute of Ho Chi Minh City, Ho Chi Minh City, Vietnam
8 shared publications - Dao Huy Manh
Department of Immunogenetics, Institute of Tropical Medicine (NEKKEN), Leading Graduate School Program, and Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki, Japan
4 shared publications Hieu T. Nguyen
Pasteur Institute, 167 Pasteur, District 3, Ho Chi Minh City, Viet Nam
4 shared publicationsLan T. Phan
Pasteur Institute, 167 Pasteur, District 3, Ho Chi Minh City, Viet Nam
4 shared publications- Quang Chan Luong
Department for Disease Control and Prevention, Pasteur Institute of Ho Chi Minh City, Ho Chi Minh City, Vietnam
4 shared publications Thang M. Cao
Pasteur Institute, 167 Pasteur, District 3, Ho Chi Minh City, Viet Nam
4 shared publications
Latest Publications
- Open Access
- 7 May 2024
- Published by Elsevier in IJID Regions
- Vol. 11, 100375
Pregnant women with chronic hepatitis B virus infection at the assessment of tenofovir disoproxil fumarate prescription: Baseline characteristics of a prospective cohort study in Vietnam
- 7 May 2024
- Published by Elsevier in IJID Regions
- Vol. 11, 100375
Open AccessPregnant women with chronic hepatitis B virus infection at the assessment of tenofovir disoproxil fumarate prescription: Baseline characteristics of a prospective cohort study in Vietnam
- Open Access
- 18 November 2023
- Published by Elsevier in IJID Regions
- Vol. 10, 52-59
Characterizing Neisseria meningitidis in Southern Vietnam between 2012 and 2021: A predominance of the chloramphenicol-resistant ST-1576 lineage
- 18 November 2023
- Published by Elsevier in IJID Regions
- Vol. 10, 52-59
Open AccessCharacterizing Neisseria meningitidis in Southern Vietnam between 2012 and 2021: A predominance of the chloramphenicol-resistant ST-1576 lineage
- Open Access
Serological and Molecular Epidemiology of Chikungunya Virus Infection in Vietnam, 2017–2019
Chikungunya fever is an acute febrile illness caused by the chikungunya virus (CHIKV), which is transmitted by Aedes mosquitoes. Since 1965, only a few studies with limited scope have been conducted on CHIKV in Vietnam. Thus, this study aimed to determine the seroprevalence and molecular epidemiology of CHIKV infection among febrile patients in Vietnam from 2017 to 2019. A total of 1063 serum samples from 31 provinces were collected and tested for anti-CHIKV IgM and IgG ELISA. The 50% focus reduction neutralization test (FRNT50) was used to confirm CHIKV-neutralizing antibodies. Quantitative real-time RT–PCR (RT–qPCR) was performed to confirm the presence of the CHIKV genome. The results showed that 15.9% (169/1063) of the patients had anti-CHIKV IgM antibodies, 20.1% (214/1063) had anti-CHIKV IgG antibodies, 10.4% (111/1063) had CHIKV-neutralizing antibodies, and 27.7% (130/469) of the samples were positive in RT–qPCR analysis. The E1 CHIKV genome sequences were detected among the positive RT–qPCR samples. Our identified sequences belonged to the East/Central/South/African (ECSA) genotype, which has been prevalent in Vietnam previously, suggesting CHIKV has been maintained and is endemic in Vietnam. This study demonstrates a high prevalence of CHIKV infection in Vietnam and calls for an annual surveillance program to understand its impact.
Open AccessSerological and Molecular Epidemiology of Chikungunya Virus Infection in Vietnam, 2017–2019
Chikungunya fever is an acute febrile illness caused by the chikungunya virus (CHIKV), which is transmitted by Aedes mosquitoes. Since 1965, only a few studies with limited scope have been conducted on CHIKV in Vietnam. Thus, this study aimed to determine the seroprevalence and molecular epidemiology of CHIKV infection among febrile patients in Vietnam from 2017 to 2019. A total of 1063 serum samples from 31 provinces were collected and tested for anti-CHIKV IgM and IgG ELISA. The 50% focus reduction neutralization test (FRNT50) was used to confirm CHIKV-neutralizing antibodies. Quantitative real-time RT–PCR (RT–qPCR) was performed to confirm the presence of the CHIKV genome. The results showed that 15.9% (169/1063) of the patients had anti-CHIKV IgM antibodies, 20.1% (214/1063) had anti-CHIKV IgG antibodies, 10.4% (111/1063) had CHIKV-neutralizing antibodies, and 27.7% (130/469) of the samples were positive in RT–qPCR analysis. The E1 CHIKV genome sequences were detected among the positive RT–qPCR samples. Our identified sequences belonged to the East/Central/South/African (ECSA) genotype, which has been prevalent in Vietnam previously, suggesting CHIKV has been maintained and is endemic in Vietnam. This study demonstrates a high prevalence of CHIKV infection in Vietnam and calls for an annual surveillance program to understand its impact.
- Open Access
- 16 May 2022
- Published by Elsevier in The Lancet Regional Health - Western Pacific
- Vol. 24, 100474
Safety and immunogenicity of Nanocovax, a SARS-CoV-2 recombinant spike protein vaccine: Interim results of a double-blind, randomised controlled phase 1 and 2 trial
- 16 May 2022
- Published by Elsevier in The Lancet Regional Health - Western Pacific
- Vol. 24, 100474
Open AccessSafety and immunogenicity of Nanocovax, a SARS-CoV-2 recombinant spike protein vaccine: Interim results of a double-blind, randomised controlled phase 1 and 2 trial
- Open Access
- 26 January 2022
- Published by American Society of Tropical Medicine and Hygiene in The American Journal of Tropical Medicine and Hygiene
- Vol. 106 (3) , 891-895
Seroprevalence of SARS-CoV-2 Neutralizing Antibodies among Blood Donors in Ho Chi Minh City, Vietnam, August–November 2020
: Relatively little is known about the seroprevalence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) IgG antibodies and COVID-19-related behaviors in the general population in Vietnam, where the first case of COVID-19 was detected on January 22, 2020. We surveyed a group of 885 blood donors at community blood donation sessions in Ho Chi Minh City from August 27 to November 7, 2020. Blood was collected to test for SARS-CoV-2 IgG antibodies using the plaque reduction neutralization test. We adjusted the seroprevalence by weight for ages 18 to 59 years old obtained from the 2019 population census. The weighted seroprevalence estimate for SARS-CoV-2 neutralizing IgG antibodies was 0.20% (95% CI, 0.05–0.81). Reports of usually or always using a mask in public places were observed at high levels of 28.6% and 67.5%, respectively. The percentages of usually or always washing hands with soap or disinfecting with hand sanitizer after touching items in public places were 48.0% and 37.6%, respectively. Although our findings suggest undocumented exposure to the virus, the seroprevalence of SARS-CoV-2 IgG antibodies among blood donors was low in this city.
- 26 January 2022
- Published by American Society of Tropical Medicine and Hygiene in The American Journal of Tropical Medicine and Hygiene
- Vol. 106 (3) , 891-895
Open AccessSeroprevalence of SARS-CoV-2 Neutralizing Antibodies among Blood Donors in Ho Chi Minh City, Vietnam, August–November 2020
: Relatively little is known about the seroprevalence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) IgG antibodies and COVID-19-related behaviors in the general population in Vietnam, where the first case of COVID-19 was detected on January 22, 2020. We surveyed a group of 885 blood donors at community blood donation sessions in Ho Chi Minh City from August 27 to November 7, 2020. Blood was collected to test for SARS-CoV-2 IgG antibodies using the plaque reduction neutralization test. We adjusted the seroprevalence by weight for ages 18 to 59 years old obtained from the 2019 population census. The weighted seroprevalence estimate for SARS-CoV-2 neutralizing IgG antibodies was 0.20% (95% CI, 0.05–0.81). Reports of usually or always using a mask in public places were observed at high levels of 28.6% and 67.5%, respectively. The percentages of usually or always washing hands with soap or disinfecting with hand sanitizer after touching items in public places were 48.0% and 37.6%, respectively. Although our findings suggest undocumented exposure to the virus, the seroprevalence of SARS-CoV-2 IgG antibodies among blood donors was low in this city.
- Open Access
- 1 November 2021
- Published by Elsevier in International Journal of Infectious Diseases
- Vol. 112, 136-143
Anal human papillomavirus prevalence and risk factors among men who have sex with men in Vietnam
- 1 November 2021
- Published by Elsevier in International Journal of Infectious Diseases
- Vol. 112, 136-143
Open AccessAnal human papillomavirus prevalence and risk factors among men who have sex with men in Vietnam
- Open Access
- 27 May 2021
- Published by Wiley in Journal of Medical Virology
- Vol. 93 (9) , 5660-5665
Genome‐wide analysis of SARS‐CoV‐2 strains circulating in Vietnam: Understanding the nature of the epidemic and role of the D614G mutation
Genome‐wide analysis of severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) strains is essential to better understand infectivity and virulence and to track coronavirus disease 2019 (COVID‐19) cases and outbreaks. We performed whole‐genome sequencing of 27 SARS‐CoV‐2 strains isolated between January 2020 and April 2020. A total of 54 mutations in different genomic regions was found. The D614G mutation, first detected in March 2020, was identified in 18 strains and was more likely associated with a lower cycle threshold (<25) in real‐time reverse‐transcription polymerase chain reaction diagnostic tests than the original D614 (prevalence ratio = 2.75; 95% confidence interval, 1.19–6.38). The integration of sequencing and epidemiological data suggests that SARS‐CoV‐2 transmission in both quarantine areas and in the community in Vietnam occur at the beginning of the epidemic although the country implemented strict quarantine quite early, with strict contact tracing, and testing. These findings provide insights into the nature of the epidemic, as well as shape strategies for COVID‐19 prevention and control in Vietnam.
- 27 May 2021
- Published by Wiley in Journal of Medical Virology
- Vol. 93 (9) , 5660-5665
Open AccessGenome‐wide analysis of SARS‐CoV‐2 strains circulating in Vietnam: Understanding the nature of the epidemic and role of the D614G mutation
Genome‐wide analysis of severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) strains is essential to better understand infectivity and virulence and to track coronavirus disease 2019 (COVID‐19) cases and outbreaks. We performed whole‐genome sequencing of 27 SARS‐CoV‐2 strains isolated between January 2020 and April 2020. A total of 54 mutations in different genomic regions was found. The D614G mutation, first detected in March 2020, was identified in 18 strains and was more likely associated with a lower cycle threshold (<25) in real‐time reverse‐transcription polymerase chain reaction diagnostic tests than the original D614 (prevalence ratio = 2.75; 95% confidence interval, 1.19–6.38). The integration of sequencing and epidemiological data suggests that SARS‐CoV‐2 transmission in both quarantine areas and in the community in Vietnam occur at the beginning of the epidemic although the country implemented strict quarantine quite early, with strict contact tracing, and testing. These findings provide insights into the nature of the epidemic, as well as shape strategies for COVID‐19 prevention and control in Vietnam.
- Open Access
- 25 January 2021
- Published by BMJ in BMJ Global Health
- Vol. 6 (1) , e004100
In the interest of public safety: rapid response to the COVID-19 epidemic in Vietnam
We describe the status of the COVID-19 epidemic in Vietnam, major response successes, factors that prompted implementation of certain public health actions, and the impact of these actions. In addition, information for three case studies is reported, with crucial learnings to inform future response. Findings from this study suggest that as early as 20 January 2020, Vietnam held a national risk assessment, established a national COVID-19 Response Plan and Technical Treatment and Care Guidelines, and prepared public health laboratories to accurately diagnose cases and hospitals to effectively treat patients. The first COVID-19 case was detected on 23 January. As of 30 September, there had been three waves of the COVID-19 epidemic totalling 1095 cases, and resulting in 35 deaths all among people with underlying health conditions. Evidence of potential transmission of SARS-CoV-2 from a commercial passenger flight inbound to Vietnam was reported. This study also highlights the importance of early technical preparedness, strong political commitment, multisectoral and multilevel efforts, increased resourcing and coordination towards an effective COVID-19 response. Controlling outbreaks in settings, such as crowded public places (bars and hospitals), within certain villages and over cities, required early detection, aggressive trace-test-quarantine efforts, a geographically extensive lockdown area and an adoption of several non-pharmaceutical interventions. Many low-income and middle-income countries have experienced their second or third wave of the COVID-19 epidemic, and they can learn from Vietnam’s response across the three epidemic waves. Swift governmental action, strict border control measures, effective communication of health promotion measures, widespread community engagement, expanded testing capacity and effective social measures to slow the spread of SARS-CoV-2, are highly important in these locations.
- 25 January 2021
- Published by BMJ in BMJ Global Health
- Vol. 6 (1) , e004100
Open AccessIn the interest of public safety: rapid response to the COVID-19 epidemic in Vietnam
We describe the status of the COVID-19 epidemic in Vietnam, major response successes, factors that prompted implementation of certain public health actions, and the impact of these actions. In addition, information for three case studies is reported, with crucial learnings to inform future response. Findings from this study suggest that as early as 20 January 2020, Vietnam held a national risk assessment, established a national COVID-19 Response Plan and Technical Treatment and Care Guidelines, and prepared public health laboratories to accurately diagnose cases and hospitals to effectively treat patients. The first COVID-19 case was detected on 23 January. As of 30 September, there had been three waves of the COVID-19 epidemic totalling 1095 cases, and resulting in 35 deaths all among people with underlying health conditions. Evidence of potential transmission of SARS-CoV-2 from a commercial passenger flight inbound to Vietnam was reported. This study also highlights the importance of early technical preparedness, strong political commitment, multisectoral and multilevel efforts, increased resourcing and coordination towards an effective COVID-19 response. Controlling outbreaks in settings, such as crowded public places (bars and hospitals), within certain villages and over cities, required early detection, aggressive trace-test-quarantine efforts, a geographically extensive lockdown area and an adoption of several non-pharmaceutical interventions. Many low-income and middle-income countries have experienced their second or third wave of the COVID-19 epidemic, and they can learn from Vietnam’s response across the three epidemic waves. Swift governmental action, strict border control measures, effective communication of health promotion measures, widespread community engagement, expanded testing capacity and effective social measures to slow the spread of SARS-CoV-2, are highly important in these locations.
- Open Access
Lessons learned from Vietnam’s COVID-19 response: the role of adaptive behavior change and testing in epidemic control
Background: Vietnam has emerged as one of the world’s leading success stories in responding to COVID-19. After prolonged zero-low transmission, a summer outbreak of unknown source at Da Nang caused the country’s first COVID-19 deaths, but was quickly suppressed. Vietnam recently reopened its borders to international travelers. Understanding the attendant risks and how to minimize them is crucial as Vietnam moves into this new phase. Methods: We create an agent-based model of COVID-19 in Vietnam, using regional testing data and a detailed linelist of the 1,014 COVID-19 cases, including 35 deaths, identified across Vietnam. We investigate the Da Nang outbreak, and quantify the risk of another outbreak under different assumptions about behavioral/policy responses and ongoing testing. Results: The Da Nang outbreak, although rapidly contained once detected, nevertheless caused significant community transmission before it was detected; higher symptomatic testing could have mitigated this. If testing levels do not increase, the adoption of past policies in response to newly-detected cases may reduce the size of potential outbreaks but will not prevent them. Compared to a baseline symptomatic testing rate of 10%, we estimate half as many infections under a 20% testing rate, and a quarter as many with 40-50% testing rates, over the four months following border reopenings. Conclusions: Vietnam’s success in controlling COVID-19 is largely attributable to its rapid response to detected outbreaks, but the speed of response could be improved even further with higher levels of symptomatic testing.
Open AccessLessons learned from Vietnam’s COVID-19 response: the role of adaptive behavior change and testing in epidemic control
Background: Vietnam has emerged as one of the world’s leading success stories in responding to COVID-19. After prolonged zero-low transmission, a summer outbreak of unknown source at Da Nang caused the country’s first COVID-19 deaths, but was quickly suppressed. Vietnam recently reopened its borders to international travelers. Understanding the attendant risks and how to minimize them is crucial as Vietnam moves into this new phase. Methods: We create an agent-based model of COVID-19 in Vietnam, using regional testing data and a detailed linelist of the 1,014 COVID-19 cases, including 35 deaths, identified across Vietnam. We investigate the Da Nang outbreak, and quantify the risk of another outbreak under different assumptions about behavioral/policy responses and ongoing testing. Results: The Da Nang outbreak, although rapidly contained once detected, nevertheless caused significant community transmission before it was detected; higher symptomatic testing could have mitigated this. If testing levels do not increase, the adoption of past policies in response to newly-detected cases may reduce the size of potential outbreaks but will not prevent them. Compared to a baseline symptomatic testing rate of 10%, we estimate half as many infections under a 20% testing rate, and a quarter as many with 40-50% testing rates, over the four months following border reopenings. Conclusions: Vietnam’s success in controlling COVID-19 is largely attributable to its rapid response to detected outbreaks, but the speed of response could be improved even further with higher levels of symptomatic testing.
- Open Access
- 16 June 2020
- Published by Elsevier in SSRN Electronic Journal
Asymptomatic and Presymptomatic Transmission of 2019 Novel Coronavirus (COVID-19) Infection: An Estimation from a Cluster of Confirmed Cases in Ho Chi Minh City, Vietnam
Background The rapid increase in the number of coronavirus disease 2019 (COVID-19) cases worldwide has raised concerns of viral transmission from individuals displaying no or delayed clinical symptoms. We quantified the transmission potential of asymptomatic, presymptomatic and symptomatic cases using surveillance data from a bar gathering in Ho Chi Minh City, Vietnam. Methods Between March 14 and April 25, 2020, we collected demographic, clinical and laboratory information of all COVID-19 confirmed cases and contacts from a bar gathering. We applied a Bayesian framework to estimate the proportions of asymptomatic, presymptomatic and symptomatic cases and transmissions with posterior modes and 90% credible intervals (CrI). Using Go.Data, we mapped chains of transmission and estimated the basic reproduction number (R_0). Findings Of the 298 individuals attending the bar gathering on March 14, 2020, 13 tested positive for SARS-CoV-2. Another 6 tested positive from 4466 contacts further traced. The proportions asymptomatic, presymptomatic, and symptomatic were 0·43 (90% CrI 0·26−0·60), 0·35 (90% CrI 0·20−0·52) and 0·22 (90% CrI 0·09−0·37), respectively. The proportion of asymptomatic, presymptomatic and symptomatic transmissions were 0·35 (90% CrI 0·16−0·68), 0·53 (90% CrI 0.21−0.77), and 0·04 (90% CrI 0·02−0·26), respectively. The cluster-specific R0 was 2·52 (90% CrI 1·65−4·88). The bar constituted 68%, workplace 21%, and household 11% of transmissions. Interpretations We demonstrated using statistical models on surveillance data that high of asymptomatic and presymptomatic transmission of COVID-19 occurred in a Vietnam cluster. Detecting and isolating presymptomatic and asymptomatic cases will be an important control measure as movement restrictions are lifted. Funding None
- 16 June 2020
- Published by Elsevier in SSRN Electronic Journal
Open AccessAsymptomatic and Presymptomatic Transmission of 2019 Novel Coronavirus (COVID-19) Infection: An Estimation from a Cluster of Confirmed Cases in Ho Chi Minh City, Vietnam
Background The rapid increase in the number of coronavirus disease 2019 (COVID-19) cases worldwide has raised concerns of viral transmission from individuals displaying no or delayed clinical symptoms. We quantified the transmission potential of asymptomatic, presymptomatic and symptomatic cases using surveillance data from a bar gathering in Ho Chi Minh City, Vietnam. Methods Between March 14 and April 25, 2020, we collected demographic, clinical and laboratory information of all COVID-19 confirmed cases and contacts from a bar gathering. We applied a Bayesian framework to estimate the proportions of asymptomatic, presymptomatic and symptomatic cases and transmissions with posterior modes and 90% credible intervals (CrI). Using Go.Data, we mapped chains of transmission and estimated the basic reproduction number (R_0). Findings Of the 298 individuals attending the bar gathering on March 14, 2020, 13 tested positive for SARS-CoV-2. Another 6 tested positive from 4466 contacts further traced. The proportions asymptomatic, presymptomatic, and symptomatic were 0·43 (90% CrI 0·26−0·60), 0·35 (90% CrI 0·20−0·52) and 0·22 (90% CrI 0·09−0·37), respectively. The proportion of asymptomatic, presymptomatic and symptomatic transmissions were 0·35 (90% CrI 0·16−0·68), 0·53 (90% CrI 0.21−0.77), and 0·04 (90% CrI 0·02−0·26), respectively. The cluster-specific R0 was 2·52 (90% CrI 1·65−4·88). The bar constituted 68%, workplace 21%, and household 11% of transmissions. Interpretations We demonstrated using statistical models on surveillance data that high of asymptomatic and presymptomatic transmission of COVID-19 occurred in a Vietnam cluster. Detecting and isolating presymptomatic and asymptomatic cases will be an important control measure as movement restrictions are lifted. Funding None