Howard Burkom
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Howard Burkom has a total of 244 co-authors. Here are the top co-authors by number of shared publications:
Yevgeniy Elbert
The Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, United States of America
9 shared publicationsJulia Gunn
Boston Public Health Commission, Boston, MA, USA
4 shared publications- Hadi Kharrazi
Johns Hopkins University
3 shared publications - Hsien-Yen Chang
Johns Hopkins Bloomberg School of Public Health
3 shared publications Ian Painter
University of Washington School of Public Health, Dept. of Health Services, Seattle, WA
3 shared publications- Jonathan P. Weiner
Center for Population Health Information Technology, Department of Health Policy and Management, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, United States
3 shared publications
Latest Publications
- 18 February 2026
- Published by Oxford University Press (OUP) in JNCI: Journal of the National Cancer Institute
- Vol. 118 (7) , 1238-1247
Deployment to Karshi-Khanabad Air Base, Uzbekistan between 2001 and 2005 and subsequent risk of specific cancers among US service members
Background: Adverse health events have been reported among US service members who served at Karshi-Khanabad (K2) Air Base, Uzbekistan, but prior studies of cancer risk had key limitations. Methods: A nested case-control study to assess the association between K2 deployment and cancer outcomes among military personnel deployed between 2001 and 2005. Eight malignant outcomes (brain, colorectal, liver, urinary tract, pancreatic, prostate, leukemia, non-Hodgkin’s lymphoma [NHL]) were identified via health records from the Department of Defense and Veterans Administration through 2022. Cases were matched to controls (1:100) on age, sex, and health system usage. Covariate-adjusted conditional logistic regression models estimated outcome likelihood by exposure surrogates without and with lagging. Results: Among 619 403 service members, 15 031 (2.3%) were deployed at least once to K2 (median duration 130 days). We identified cancer cases (count; cumulative incidence per 10 000) for brain (450; 7.3), colorectal (1542; 25.0), liver (113; 1.8), urinary tract (1831; 29.7), pancreatic (417; 6.8), prostate (5165; 83.6), leukemia (707; 11.5), and NHL (1700; 27.5). Across 7 of 8 outcomes, there were no associations between deployment and case status. In contrast, each additional month of deployment increased the odds of NHL by 13% (95% CI = 4% to 23%) and deployment >180 days was associated with higher odds (OR = 1.78; 95% CI = 1.08 to 2.94). When lagging exposure by 12-15 years, these associations strengthened (range: OR=2.38 [95% CI = 1.17 to 4.82] to OR=3.09 [95% CI = 1.73 to 5.52]). Conclusions: Long-term K2 deployment was associated with increased likelihood of non-Hodgkin’s lymphoma. Careful clinical monitoring and continued follow-up of this cohort for cancer and other outcomes are warranted.
- 18 February 2026
- Published by Oxford University Press (OUP) in JNCI: Journal of the National Cancer Institute
- Vol. 118 (7) , 1238-1247
Deployment to Karshi-Khanabad Air Base, Uzbekistan between 2001 and 2005 and subsequent risk of specific cancers among US service members
Background: Adverse health events have been reported among US service members who served at Karshi-Khanabad (K2) Air Base, Uzbekistan, but prior studies of cancer risk had key limitations. Methods: A nested case-control study to assess the association between K2 deployment and cancer outcomes among military personnel deployed between 2001 and 2005. Eight malignant outcomes (brain, colorectal, liver, urinary tract, pancreatic, prostate, leukemia, non-Hodgkin’s lymphoma [NHL]) were identified via health records from the Department of Defense and Veterans Administration through 2022. Cases were matched to controls (1:100) on age, sex, and health system usage. Covariate-adjusted conditional logistic regression models estimated outcome likelihood by exposure surrogates without and with lagging. Results: Among 619 403 service members, 15 031 (2.3%) were deployed at least once to K2 (median duration 130 days). We identified cancer cases (count; cumulative incidence per 10 000) for brain (450; 7.3), colorectal (1542; 25.0), liver (113; 1.8), urinary tract (1831; 29.7), pancreatic (417; 6.8), prostate (5165; 83.6), leukemia (707; 11.5), and NHL (1700; 27.5). Across 7 of 8 outcomes, there were no associations between deployment and case status. In contrast, each additional month of deployment increased the odds of NHL by 13% (95% CI = 4% to 23%) and deployment >180 days was associated with higher odds (OR = 1.78; 95% CI = 1.08 to 2.94). When lagging exposure by 12-15 years, these associations strengthened (range: OR=2.38 [95% CI = 1.17 to 4.82] to OR=3.09 [95% CI = 1.73 to 5.52]). Conclusions: Long-term K2 deployment was associated with increased likelihood of non-Hodgkin’s lymphoma. Careful clinical monitoring and continued follow-up of this cohort for cancer and other outcomes are warranted.
- 12 June 2024
- Published by Wolters Kluwer Health in Journal of Public Health Management & Practice
- Vol. 30 (4) , 578-585
A Framework for Developing and Assessing Custom Case Definitions: A Demonstration Applied to Opioid Overdose in Maryland
Context: Public health epidemiologists monitor data sources for disease outbreaks and other events of public health concern, but manual review of records to identify cases of interest is slow and labor-intensive and may not reflect evolving data practices. To automatically identify cases from electronic data sources, epidemiologists must use “case definitions” or formal logic that captures the criteria used to identify a record as a case of interest. Objective: To establish a methodology for development and evaluation of case definitions. A logical evaluation framework to approach case definitions will allow jurisdictions the flexibility to implement a case definition tailored to their goals and available data. Design: Case definition development is explained as a process with multiple logical components combining free-text and categorical data fields. The process is illustrated with the development of a case definition to identify emergency medical services (EMS) call records related to opioid overdoses in Maryland. Setting: The Maryland Department of Health (MDH) installation of the Electronic Surveillance System for Early Notification of Community-Based Epidemics (ESSENCE), which began capturing EMS call records in ESSENCE in 2019 to improve statewide coverage of all-hazards health issues. Results: We describe a case definition evaluation framework and demonstrate its application through development of an opioid overdose case definition to be used in MDH ESSENCE. We show the iterative process of development, from defining how a case can be identified conceptually to examining each component of the conceptual definition and then exploring how to capture that component using available data. Conclusion: We present a framework for developing and qualitatively assessing case definitions and demonstrate an application of the framework to identifying opioid overdose incidents from MDH EMS data. We discuss guidelines to support jurisdictions in applying this framework to their own data and public health challenges to improve local surveillance capability.
- 12 June 2024
- Published by Wolters Kluwer Health in Journal of Public Health Management & Practice
- Vol. 30 (4) , 578-585
A Framework for Developing and Assessing Custom Case Definitions: A Demonstration Applied to Opioid Overdose in Maryland
Context: Public health epidemiologists monitor data sources for disease outbreaks and other events of public health concern, but manual review of records to identify cases of interest is slow and labor-intensive and may not reflect evolving data practices. To automatically identify cases from electronic data sources, epidemiologists must use “case definitions” or formal logic that captures the criteria used to identify a record as a case of interest. Objective: To establish a methodology for development and evaluation of case definitions. A logical evaluation framework to approach case definitions will allow jurisdictions the flexibility to implement a case definition tailored to their goals and available data. Design: Case definition development is explained as a process with multiple logical components combining free-text and categorical data fields. The process is illustrated with the development of a case definition to identify emergency medical services (EMS) call records related to opioid overdoses in Maryland. Setting: The Maryland Department of Health (MDH) installation of the Electronic Surveillance System for Early Notification of Community-Based Epidemics (ESSENCE), which began capturing EMS call records in ESSENCE in 2019 to improve statewide coverage of all-hazards health issues. Results: We describe a case definition evaluation framework and demonstrate its application through development of an opioid overdose case definition to be used in MDH ESSENCE. We show the iterative process of development, from defining how a case can be identified conceptually to examining each component of the conceptual definition and then exploring how to capture that component using available data. Conclusion: We present a framework for developing and qualitatively assessing case definitions and demonstrate an application of the framework to identifying opioid overdose incidents from MDH EMS data. We discuss guidelines to support jurisdictions in applying this framework to their own data and public health challenges to improve local surveillance capability.
- Open Access
- 24 March 2022
- Published by JMIR Publications Inc. in JMIR Medical Informatics
- Vol. 10 (3) , e33212
Improving the Prediction of Persistent High Health Care Utilizers: Retrospective Analysis Using Ensemble Methodology
Background: A small proportion of high-need patients persistently use the bulk of health care services and incur disproportionate costs. Population health management (PHM) programs often refer to these patients as persistent high utilizers (PHUs). Accurate PHU prediction enables PHM programs to better align scarce health care resources with high-need PHUs while generally improving outcomes. While prior research in PHU prediction has shown promise, traditional regression methods used in these studies have yielded limited accuracy. Objective: We are seeking to improve PHU predictions with an ensemble approach in a retrospective observational study design using insurance claim records. Methods: We defined a PHU as a patient with health care costs in the top 20% of all patients for 4 consecutive 6-month periods. We used 2013 claims data to predict PHU status in next 24 months. Our study population included 165,595 patients in the Johns Hopkins Health Care plan, with 8359 (5.1%) patients identified as PHUs in 2014 and 2015. We assessed the performance of several standalone machine learning methods and then an ensemble approach combining multiple models. Results: The candidate ensemble with complement naïve Bayes and random forest layers produced increased sensitivity and positive predictive value (PPV; 49.0% and 50.3%, respectively) compared to logistic regression (46.8% and 46.1%, respectively). Conclusions: Our results suggest that ensemble machine learning can improve prediction of care management needs. Improved PPV implies reduced incorrect referral of low-risk patients. With the improved sensitivity/PPV balance of this approach, resources may be directed more efficiently to patients needing them most.
- 24 March 2022
- Published by JMIR Publications Inc. in JMIR Medical Informatics
- Vol. 10 (3) , e33212
Open AccessImproving the Prediction of Persistent High Health Care Utilizers: Retrospective Analysis Using Ensemble Methodology
Background: A small proportion of high-need patients persistently use the bulk of health care services and incur disproportionate costs. Population health management (PHM) programs often refer to these patients as persistent high utilizers (PHUs). Accurate PHU prediction enables PHM programs to better align scarce health care resources with high-need PHUs while generally improving outcomes. While prior research in PHU prediction has shown promise, traditional regression methods used in these studies have yielded limited accuracy. Objective: We are seeking to improve PHU predictions with an ensemble approach in a retrospective observational study design using insurance claim records. Methods: We defined a PHU as a patient with health care costs in the top 20% of all patients for 4 consecutive 6-month periods. We used 2013 claims data to predict PHU status in next 24 months. Our study population included 165,595 patients in the Johns Hopkins Health Care plan, with 8359 (5.1%) patients identified as PHUs in 2014 and 2015. We assessed the performance of several standalone machine learning methods and then an ensemble approach combining multiple models. Results: The candidate ensemble with complement naïve Bayes and random forest layers produced increased sensitivity and positive predictive value (PPV; 49.0% and 50.3%, respectively) compared to logistic regression (46.8% and 46.1%, respectively). Conclusions: Our results suggest that ensemble machine learning can improve prediction of care management needs. Improved PPV implies reduced incorrect referral of low-risk patients. With the improved sensitivity/PPV balance of this approach, resources may be directed more efficiently to patients needing them most.
- Open Access
- 14 February 2022
- Published by Western Journal of Emergency Medicine in Western Journal of Emergency Medicine
- Vol. 23 (2) , 115-123
Cloud-Based Influenza Surveillance System in Emergency Departments Using Molecular-Based Testing: Advances and Challenges
Introduction: Electronic influenza surveillance systems aid in health surveillance and clinical decisionmaking within the emergency department (ED). While major advances have been made in integrating clinical decision-making tools within the electronic health record (EHR), tools for sharing surveillance data are often piecemeal, with the need for data downloads and manual uploads to shared servers, delaying time from data acquisition to end-user. Real-time surveillance can help both clinicians and public health professionals recognize circulating influenza earlier in the season and provide ongoing situational awareness.Methods: We created a prototype, cloud-based, real-time reporting system in two large, academically affiliated EDs that streamed continuous data on a web-based dashboard within hours of specimen collection during the influenza season. Data included influenza test results (positive or negative) coupled with test date, test instrument geolocation, and basic patient demographics. The system provided immediate reporting to frontline clinicians and to local, state, and federal health department partners.Results: We describe the process, infrastructure requirements, and challenges of developing and implementing the prototype system. Key process-related requirements for system development included merging data from the molecular test (GeneXpert) with the hospitals’ EHRs, securing data, authorizing/ authenticating users, and providing permissions for data access refining visualizations for end-users.Conclusion: In this case study, we effectively integrated multiple data systems at four distinct hospital EDs, relaying data in near real time to hospital-based staff and local and national public health entities, to provide laboratory-confirmed influenza test results during the 2014-2015 influenza season. Future innovations need to focus on integrating the dashboard within the EHR and clinical decision tools.
- 14 February 2022
- Published by Western Journal of Emergency Medicine in Western Journal of Emergency Medicine
- Vol. 23 (2) , 115-123
Open AccessCloud-Based Influenza Surveillance System in Emergency Departments Using Molecular-Based Testing: Advances and Challenges
Introduction: Electronic influenza surveillance systems aid in health surveillance and clinical decisionmaking within the emergency department (ED). While major advances have been made in integrating clinical decision-making tools within the electronic health record (EHR), tools for sharing surveillance data are often piecemeal, with the need for data downloads and manual uploads to shared servers, delaying time from data acquisition to end-user. Real-time surveillance can help both clinicians and public health professionals recognize circulating influenza earlier in the season and provide ongoing situational awareness.Methods: We created a prototype, cloud-based, real-time reporting system in two large, academically affiliated EDs that streamed continuous data on a web-based dashboard within hours of specimen collection during the influenza season. Data included influenza test results (positive or negative) coupled with test date, test instrument geolocation, and basic patient demographics. The system provided immediate reporting to frontline clinicians and to local, state, and federal health department partners.Results: We describe the process, infrastructure requirements, and challenges of developing and implementing the prototype system. Key process-related requirements for system development included merging data from the molecular test (GeneXpert) with the hospitals’ EHRs, securing data, authorizing/ authenticating users, and providing permissions for data access refining visualizations for end-users.Conclusion: In this case study, we effectively integrated multiple data systems at four distinct hospital EDs, relaying data in near real time to hospital-based staff and local and national public health entities, to provide laboratory-confirmed influenza test results during the 2014-2015 influenza season. Future innovations need to focus on integrating the dashboard within the EHR and clinical decision tools.
- Open Access
- 25 November 2021
- Published by JMIR Publications Inc. in JMIR Medical Informatics
- Vol. 9 (11) , e31442
Assessing the Value of Unsupervised Clustering in Predicting Persistent High Health Care Utilizers: Retrospective Analysis of Insurance Claims Data
Journal of Medical Internet Research - International Scientific Journal for Medical Research, Information and Communication on the Internet #Preprint #PeerReviewMe: Warning: This is a unreviewed preprint. Readers are warned that the document has not been peer-reviewed by expert/patient reviewers or an academic editor, may contain misleading claims, and is likely to undergo changes before final publication, if accepted, or may have been rejected/withdrawn. Readers with interest and expertise are encouraged to sign up as peer-reviewer, if the paper is within an open peer-review period. Please cite this preprint only for review purposes or for grant applications and CVs (if you are the author).
- 25 November 2021
- Published by JMIR Publications Inc. in JMIR Medical Informatics
- Vol. 9 (11) , e31442
Open AccessAssessing the Value of Unsupervised Clustering in Predicting Persistent High Health Care Utilizers: Retrospective Analysis of Insurance Claims Data
Journal of Medical Internet Research - International Scientific Journal for Medical Research, Information and Communication on the Internet #Preprint #PeerReviewMe: Warning: This is a unreviewed preprint. Readers are warned that the document has not been peer-reviewed by expert/patient reviewers or an academic editor, may contain misleading claims, and is likely to undergo changes before final publication, if accepted, or may have been rejected/withdrawn. Readers with interest and expertise are encouraged to sign up as peer-reviewer, if the paper is within an open peer-review period. Please cite this preprint only for review purposes or for grant applications and CVs (if you are the author).
- Open Access
- 21 June 2021
- Published by JMIR Publications Inc. in JMIR Preprints
Assessing the Value of Unsupervised Clustering in Predicting Persistent High Health Care Utilizers: Retrospective Analysis of Insurance Claims Data (Preprint)
BACKGROUND A high proportion of health care services are persistently utilized by a small subpopulation of patients. To improve clinical outcomes while reducing costs and utilization, population health management programs often provide targeted interventions to patients who may become persistent high users/utilizers (PHUs). Enhanced prediction and management of PHUs can improve health care system efficiencies and improve the overall quality of patient care. OBJECTIVE The aim of this study was to detect key classes of diseases and medications among the study population and to assess the predictive value of these classes in identifying PHUs. METHODS This study was a retrospective analysis of insurance claims data of patients from the Johns Hopkins Health Care system. We defined a PHU as a patient incurring health care costs in the top 20% of all patients’ costs for 4 consecutive 6-month periods. We used 2013 claims data to predict PHU status in 2014-2015. We applied latent class analysis (LCA), an unsupervised clustering approach, to identify patient subgroups with similar diagnostic and medication patterns to differentiate variations in health care utilization across PHUs. Logistic regression models were then built to predict PHUs in the full population and in select subpopulations. Predictors included LCA membership probabilities, demographic covariates, and health utilization covariates. Predictive powers of the regression models were assessed and compared using standard metrics. RESULTS We identified 164,221 patients with continuous enrollment between 2013 and 2015. The mean study population age was 19.7 years, 55.9% were women, 3.3% had ≥1 hospitalization, and 19.1% had 10+ outpatient visits in 2013. A total of 8359 (5.09%) patients were identified as PHUs in both 2014 and 2015. The LCA performed optimally when assigning patients to four probability disease/medication classes. Given the feedback provided by clinical experts, we further divided the population into four diagnostic groups for sensitivity analysis: acute upper respiratory infection (URI) (n=53,232; 4.6% PHUs), mental health (n=34,456; 12.8% PHUs), otitis media (n=24,992; 4.5% PHUs), and musculoskeletal (n=24,799; 15.5% PHUs). For the regression models predicting PHUs in the full population, the F1-score classification metric was lower using a parsimonious model that included LCA categories (F1=38.62%) compared to that of a complex risk stratification model with a full set of predictors (F1=48.20%). However, the LCA-enabled simple models were comparable to the complex model when predicting PHUs in the mental health and musculoskeletal subpopulations (F1-scores of 48.69% and 48.15%, respectively). F1-scores were lower than that of the complex model when the LCA-enabled models were limited to the otitis media and acute URI subpopulations (45.77% and 43.05%, respectively). CONCLUSIONS Our study illustrates the value of LCA in identifying subgroups of patients with similar patterns of diagnoses and medications. Our results show that LCA-derived classes can simplify predictive models of PHUs without compromising predictive accuracy. Future studies should investigate the value of LCA-derived classes for predicting PHUs in other health care settings.
- 21 June 2021
- Published by JMIR Publications Inc. in JMIR Preprints
Open AccessAssessing the Value of Unsupervised Clustering in Predicting Persistent High Health Care Utilizers: Retrospective Analysis of Insurance Claims Data (Preprint)
BACKGROUND A high proportion of health care services are persistently utilized by a small subpopulation of patients. To improve clinical outcomes while reducing costs and utilization, population health management programs often provide targeted interventions to patients who may become persistent high users/utilizers (PHUs). Enhanced prediction and management of PHUs can improve health care system efficiencies and improve the overall quality of patient care. OBJECTIVE The aim of this study was to detect key classes of diseases and medications among the study population and to assess the predictive value of these classes in identifying PHUs. METHODS This study was a retrospective analysis of insurance claims data of patients from the Johns Hopkins Health Care system. We defined a PHU as a patient incurring health care costs in the top 20% of all patients’ costs for 4 consecutive 6-month periods. We used 2013 claims data to predict PHU status in 2014-2015. We applied latent class analysis (LCA), an unsupervised clustering approach, to identify patient subgroups with similar diagnostic and medication patterns to differentiate variations in health care utilization across PHUs. Logistic regression models were then built to predict PHUs in the full population and in select subpopulations. Predictors included LCA membership probabilities, demographic covariates, and health utilization covariates. Predictive powers of the regression models were assessed and compared using standard metrics. RESULTS We identified 164,221 patients with continuous enrollment between 2013 and 2015. The mean study population age was 19.7 years, 55.9% were women, 3.3% had ≥1 hospitalization, and 19.1% had 10+ outpatient visits in 2013. A total of 8359 (5.09%) patients were identified as PHUs in both 2014 and 2015. The LCA performed optimally when assigning patients to four probability disease/medication classes. Given the feedback provided by clinical experts, we further divided the population into four diagnostic groups for sensitivity analysis: acute upper respiratory infection (URI) (n=53,232; 4.6% PHUs), mental health (n=34,456; 12.8% PHUs), otitis media (n=24,992; 4.5% PHUs), and musculoskeletal (n=24,799; 15.5% PHUs). For the regression models predicting PHUs in the full population, the F1-score classification metric was lower using a parsimonious model that included LCA categories (F1=38.62%) compared to that of a complex risk stratification model with a full set of predictors (F1=48.20%). However, the LCA-enabled simple models were comparable to the complex model when predicting PHUs in the mental health and musculoskeletal subpopulations (F1-scores of 48.69% and 48.15%, respectively). F1-scores were lower than that of the complex model when the LCA-enabled models were limited to the otitis media and acute URI subpopulations (45.77% and 43.05%, respectively). CONCLUSIONS Our study illustrates the value of LCA in identifying subgroups of patients with similar patterns of diagnoses and medications. Our results show that LCA-derived classes can simplify predictive models of PHUs without compromising predictive accuracy. Future studies should investigate the value of LCA-derived classes for predicting PHUs in other health care settings.
- Open Access
- 21 June 2021
- Published by JMIR Publications Inc. in JMIR Public Health and Surveillance
- Vol. 7 (6) , e26303
Electronic Surveillance System for the Early Notification of Community-Based Epidemics (ESSENCE): Overview, Components, and Public Health Applications
Background: The Electronic Surveillance System for the Early Notification of Community-Based Epidemics (ESSENCE) is a secure web-based tool that enables health care practitioners to monitor health indicators of public health importance for the detection and tracking of disease outbreaks, consequences of severe weather, and other events of concern. The ESSENCE concept began in an internally funded project at the Johns Hopkins University Applied Physics Laboratory, advanced with funding from the State of Maryland, and broadened in 1999 as a collaboration with the Walter Reed Army Institute for Research. Versions of the system have been further developed by Johns Hopkins University Applied Physics Laboratory in multiple military and civilian programs for the timely detection and tracking of health threats. Objective: This study aims to describe the components and development of a biosurveillance system increasingly coordinating all-hazards health surveillance and infectious disease monitoring among large and small health departments, to list the key features and lessons learned in the growth of this system, and to describe the range of initiatives and accomplishments of local epidemiologists using it. Methods: The features of ESSENCE include spatial and temporal statistical alerting, custom querying, user-defined alert notifications, geographical mapping, remote data capture, and event communications. To expedite visualization, configurable and interactive modes of data stratification and filtering, graphical and tabular customization, user preference management, and sharing features allow users to query data and view geographic representations, time series and data details pages, and reports. These features allow ESSENCE users to gather and organize the resulting wealth of information into a coherent view of population health status and communicate findings among users. Results: The resulting broad utility, applicability, and adaptability of this system led to the adoption of ESSENCE by the Centers for Disease Control and Prevention, numerous state and local health departments, and the Department of Defense, both nationally and globally. The open-source version of Suite for Automated Global Electronic bioSurveillance is available for global, resource-limited settings. Resourceful users of the US National Syndromic Surveillance Program ESSENCE have applied it to the surveillance of infectious diseases, severe weather and natural disaster events, mass gatherings, chronic diseases and mental health, and injury and substance abuse. Conclusions: With emerging high-consequence communicable diseases and other health conditions, the continued user requirement–driven enhancements of ESSENCE demonstrate an adaptable disease surveillance capability focused on the everyday needs of public health. The challenge of a live system for widely distributed users with multiple different data sources and high throughput requirements has driven a novel, evolving architecture design.
- 21 June 2021
- Published by JMIR Publications Inc. in JMIR Public Health and Surveillance
- Vol. 7 (6) , e26303
Open AccessElectronic Surveillance System for the Early Notification of Community-Based Epidemics (ESSENCE): Overview, Components, and Public Health Applications
Background: The Electronic Surveillance System for the Early Notification of Community-Based Epidemics (ESSENCE) is a secure web-based tool that enables health care practitioners to monitor health indicators of public health importance for the detection and tracking of disease outbreaks, consequences of severe weather, and other events of concern. The ESSENCE concept began in an internally funded project at the Johns Hopkins University Applied Physics Laboratory, advanced with funding from the State of Maryland, and broadened in 1999 as a collaboration with the Walter Reed Army Institute for Research. Versions of the system have been further developed by Johns Hopkins University Applied Physics Laboratory in multiple military and civilian programs for the timely detection and tracking of health threats. Objective: This study aims to describe the components and development of a biosurveillance system increasingly coordinating all-hazards health surveillance and infectious disease monitoring among large and small health departments, to list the key features and lessons learned in the growth of this system, and to describe the range of initiatives and accomplishments of local epidemiologists using it. Methods: The features of ESSENCE include spatial and temporal statistical alerting, custom querying, user-defined alert notifications, geographical mapping, remote data capture, and event communications. To expedite visualization, configurable and interactive modes of data stratification and filtering, graphical and tabular customization, user preference management, and sharing features allow users to query data and view geographic representations, time series and data details pages, and reports. These features allow ESSENCE users to gather and organize the resulting wealth of information into a coherent view of population health status and communicate findings among users. Results: The resulting broad utility, applicability, and adaptability of this system led to the adoption of ESSENCE by the Centers for Disease Control and Prevention, numerous state and local health departments, and the Department of Defense, both nationally and globally. The open-source version of Suite for Automated Global Electronic bioSurveillance is available for global, resource-limited settings. Resourceful users of the US National Syndromic Surveillance Program ESSENCE have applied it to the surveillance of infectious diseases, severe weather and natural disaster events, mass gatherings, chronic diseases and mental health, and injury and substance abuse. Conclusions: With emerging high-consequence communicable diseases and other health conditions, the continued user requirement–driven enhancements of ESSENCE demonstrate an adaptable disease surveillance capability focused on the everyday needs of public health. The challenge of a live system for widely distributed users with multiple different data sources and high throughput requirements has driven a novel, evolving architecture design.
- Open Access
- 9 December 2020
- Published by JMIR Publications Inc. in JMIR Preprints
Electronic Surveillance System for the Early Notification of Community-Based Epidemics (ESSENCE): Overview, Components, and Public Health Applications (Preprint)
BACKGROUND The Electronic Surveillance System for the Early Notification of Community-Based Epidemics (ESSENCE) is a secure web-based tool that enables health care practitioners to monitor health indicators of public health importance for the detection and tracking of disease outbreaks, consequences of severe weather, and other events of concern. The ESSENCE concept began in an internally funded project at the Johns Hopkins University Applied Physics Laboratory, advanced with funding from the State of Maryland, and broadened in 1999 as a collaboration with the Walter Reed Army Institute for Research. Versions of the system have been further developed by Johns Hopkins University Applied Physics Laboratory in multiple military and civilian programs for the timely detection and tracking of health threats. OBJECTIVE This study aims to describe the components and development of a biosurveillance system increasingly coordinating all-hazards health surveillance and infectious disease monitoring among large and small health departments, to list the key features and lessons learned in the growth of this system, and to describe the range of initiatives and accomplishments of local epidemiologists using it. METHODS The features of ESSENCE include spatial and temporal statistical alerting, custom querying, user-defined alert notifications, geographical mapping, remote data capture, and event communications. To expedite visualization, configurable and interactive modes of data stratification and filtering, graphical and tabular customization, user preference management, and sharing features allow users to query data and view geographic representations, time series and data details pages, and reports. These features allow ESSENCE users to gather and organize the resulting wealth of information into a coherent view of population health status and communicate findings among users. RESULTS The resulting broad utility, applicability, and adaptability of this system led to the adoption of ESSENCE by the Centers for Disease Control and Prevention, numerous state and local health departments, and the Department of Defense, both nationally and globally. The open-source version of Suite for Automated Global Electronic bioSurveillance is available for global, resource-limited settings. Resourceful users of the US National Syndromic Surveillance Program ESSENCE have applied it to the surveillance of infectious diseases, severe weather and natural disaster events, mass gatherings, chronic diseases and mental health, and injury and substance abuse. CONCLUSIONS With emerging high-consequence communicable diseases and other health conditions, the continued user requirement–driven enhancements of ESSENCE demonstrate an adaptable disease surveillance capability focused on the everyday needs of public health. The challenge of a live system for widely distributed users with multiple different data sources and high throughput requirements has driven a novel, evolving architecture design.
- 9 December 2020
- Published by JMIR Publications Inc. in JMIR Preprints
Open AccessElectronic Surveillance System for the Early Notification of Community-Based Epidemics (ESSENCE): Overview, Components, and Public Health Applications (Preprint)
BACKGROUND The Electronic Surveillance System for the Early Notification of Community-Based Epidemics (ESSENCE) is a secure web-based tool that enables health care practitioners to monitor health indicators of public health importance for the detection and tracking of disease outbreaks, consequences of severe weather, and other events of concern. The ESSENCE concept began in an internally funded project at the Johns Hopkins University Applied Physics Laboratory, advanced with funding from the State of Maryland, and broadened in 1999 as a collaboration with the Walter Reed Army Institute for Research. Versions of the system have been further developed by Johns Hopkins University Applied Physics Laboratory in multiple military and civilian programs for the timely detection and tracking of health threats. OBJECTIVE This study aims to describe the components and development of a biosurveillance system increasingly coordinating all-hazards health surveillance and infectious disease monitoring among large and small health departments, to list the key features and lessons learned in the growth of this system, and to describe the range of initiatives and accomplishments of local epidemiologists using it. METHODS The features of ESSENCE include spatial and temporal statistical alerting, custom querying, user-defined alert notifications, geographical mapping, remote data capture, and event communications. To expedite visualization, configurable and interactive modes of data stratification and filtering, graphical and tabular customization, user preference management, and sharing features allow users to query data and view geographic representations, time series and data details pages, and reports. These features allow ESSENCE users to gather and organize the resulting wealth of information into a coherent view of population health status and communicate findings among users. RESULTS The resulting broad utility, applicability, and adaptability of this system led to the adoption of ESSENCE by the Centers for Disease Control and Prevention, numerous state and local health departments, and the Department of Defense, both nationally and globally. The open-source version of Suite for Automated Global Electronic bioSurveillance is available for global, resource-limited settings. Resourceful users of the US National Syndromic Surveillance Program ESSENCE have applied it to the surveillance of infectious diseases, severe weather and natural disaster events, mass gatherings, chronic diseases and mental health, and injury and substance abuse. CONCLUSIONS With emerging high-consequence communicable diseases and other health conditions, the continued user requirement–driven enhancements of ESSENCE demonstrate an adaptable disease surveillance capability focused on the everyday needs of public health. The challenge of a live system for widely distributed users with multiple different data sources and high throughput requirements has driven a novel, evolving architecture design.
- Open Access
ESSENCE, the Electronic Surveillance System for the Early Notification of Community-Based Epidemics
The Electronic Surveillance System for the Early Notification of Community-Based Epidemics (ESSENCE) is a secure web-based tool that enables health care practitioners to monitor health indicators of public health importance for detection and tracking of disease outbreaks, consequences of severe weather, and other events of concern. The ESSENCE concept began in an internally funded project at the Johns Hopkins University Applied Physics Laboratory (JHU/APL), advanced with funding from the State of Maryland, and broadened in 1999 as a collaboration with the Walter Reed Army Institute for Research. Versions of the system have been further developed by JHU/APL in multiple military and civilian programs for timely detection and tracking of health threats. Features of ESSENCE include spatial and temporal statistical alerting, custom querying, user-defined alert notifications, geographical mapping, remote data capture, and event communications. These features allow ESSENCE users to gather and organize the resulting wealth of information into a coherent view of population health status and communicate findings among users. The resulting broad utility, applicability and adaptability of this system led to adoption of ESSENCE by the Centers for Disease Control and Prevention (CDC), numerous state and local health departments, and the Department of Defense (DOD) both nationally and globally. With emerging high-consequence communicable diseases and other health conditions, the continued user-requirements-driven enhancements of ESSENCE demonstrate an adaptable disease surveillance capability focused on the everyday needs of public health. The challenge of a live system for widely distributed users with multiple different data sources and high throughput requirements has driven an novel, evolving architecture design.
Open AccessESSENCE, the Electronic Surveillance System for the Early Notification of Community-Based Epidemics
The Electronic Surveillance System for the Early Notification of Community-Based Epidemics (ESSENCE) is a secure web-based tool that enables health care practitioners to monitor health indicators of public health importance for detection and tracking of disease outbreaks, consequences of severe weather, and other events of concern. The ESSENCE concept began in an internally funded project at the Johns Hopkins University Applied Physics Laboratory (JHU/APL), advanced with funding from the State of Maryland, and broadened in 1999 as a collaboration with the Walter Reed Army Institute for Research. Versions of the system have been further developed by JHU/APL in multiple military and civilian programs for timely detection and tracking of health threats. Features of ESSENCE include spatial and temporal statistical alerting, custom querying, user-defined alert notifications, geographical mapping, remote data capture, and event communications. These features allow ESSENCE users to gather and organize the resulting wealth of information into a coherent view of population health status and communicate findings among users. The resulting broad utility, applicability and adaptability of this system led to adoption of ESSENCE by the Centers for Disease Control and Prevention (CDC), numerous state and local health departments, and the Department of Defense (DOD) both nationally and globally. With emerging high-consequence communicable diseases and other health conditions, the continued user-requirements-driven enhancements of ESSENCE demonstrate an adaptable disease surveillance capability focused on the everyday needs of public health. The challenge of a live system for widely distributed users with multiple different data sources and high throughput requirements has driven an novel, evolving architecture design.
- Open Access
- 1 March 2019
- Published by Public Library of Science (PLoS) in PLOS ONE
- Vol. 14 (3) , e0211335
Equine syndromic surveillance in Colorado using veterinary laboratory testing order data
The Risk Identification Unit (RIU) of the US Dept. of Agriculture’s Center for Epidemiology and Animal Health (CEAH) conducts weekly surveillance of national livestock health data and routine coordination with agricultural stakeholders. As part of an initiative to increase the number of species, health issues, and data sources monitored, CEAH epidemiologists are building a surveillance system based on weekly syndromic counts of laboratory test orders in consultation with Colorado State University laboratorians and statistical analysts from the Johns Hopkins University Applied Physics Laboratory. Initial efforts focused on 12 years of equine test records from three state labs. Trial syndrome groups were formed based on RIU experience and published literature. Exploratory analysis, stakeholder input, and laboratory workflow details were needed to modify these groups and filter the corresponding data to eliminate alerting bias. Customized statistical detection methods were sought for effective monitoring based on specialized laboratory information characteristics and on the likely presentation and animal health significance of diseases associated with each syndrome. Data transformation and syndrome formation focused on test battery type, test name, submitter source organization, and specimen type. We analyzed time series of weekly counts of tests included in candidate syndrome groups and conducted an iterative process of data analysis and veterinary consultation for syndrome refinement and record filters. This process produced a rule set in which records were directly classified into syndromes using only test name when possible, and otherwise, the specimen type or related body system was used with test name to determine the syndrome. Test orders associated with government regulatory programs, veterinary teaching hospital testing protocols, or research projects, rather than clinical concerns, were excluded. We constructed a testbed for sets of 1000 statistical trials and applied a stochastic injection process assuming lognormally distributed incubation periods to choose an alerting algorithm with the syndrome-required sensitivity and an alert rate within the specified acceptable range for each resulting syndrome. Alerting performance of the EARS C3 algorithm traditionally used by CEAH was compared to modified C2, CuSUM, and EWMA methods, with and without outlier removal and adjustments for the total weekly number of non-mandatory tests. The equine syndrome groups adopted for monitoring were abortion/reproductive, diarrhea/GI, necropsy, neurological, respiratory, systemic fungal, and tickborne. Data scales, seasonality, and variance differed widely among the weekly time series. Removal of mandatory and regulatory tests reduced weekly observed counts significantly—by >80% for diarrhea/GI syndrome. The RIU group studied outcomes associated with each syndrome and called for detection of single-week signals for most syndromes with expected false-alert intervals >8 and <52 weeks, 8-week signals for neurological and tickborne monitoring (requiring enhanced sensitivity), 6-week signals for respiratory, and 4-week signals for systemic fungal. From the test-bed trials, recommended methods, settings and thresholds were derived. Understanding of laboratory submission sources, laboratory workflow, and of syndrome-related outcomes are crucial to form syndrome groups for routine monitoring without artifactual alerting. Choices of methods, parameters, and thresholds varied by syndrome and depended strongly on veterinary epidemiologist-specified performance requirements.
- 1 March 2019
- Published by Public Library of Science (PLoS) in PLOS ONE
- Vol. 14 (3) , e0211335
Open AccessEquine syndromic surveillance in Colorado using veterinary laboratory testing order data
The Risk Identification Unit (RIU) of the US Dept. of Agriculture’s Center for Epidemiology and Animal Health (CEAH) conducts weekly surveillance of national livestock health data and routine coordination with agricultural stakeholders. As part of an initiative to increase the number of species, health issues, and data sources monitored, CEAH epidemiologists are building a surveillance system based on weekly syndromic counts of laboratory test orders in consultation with Colorado State University laboratorians and statistical analysts from the Johns Hopkins University Applied Physics Laboratory. Initial efforts focused on 12 years of equine test records from three state labs. Trial syndrome groups were formed based on RIU experience and published literature. Exploratory analysis, stakeholder input, and laboratory workflow details were needed to modify these groups and filter the corresponding data to eliminate alerting bias. Customized statistical detection methods were sought for effective monitoring based on specialized laboratory information characteristics and on the likely presentation and animal health significance of diseases associated with each syndrome. Data transformation and syndrome formation focused on test battery type, test name, submitter source organization, and specimen type. We analyzed time series of weekly counts of tests included in candidate syndrome groups and conducted an iterative process of data analysis and veterinary consultation for syndrome refinement and record filters. This process produced a rule set in which records were directly classified into syndromes using only test name when possible, and otherwise, the specimen type or related body system was used with test name to determine the syndrome. Test orders associated with government regulatory programs, veterinary teaching hospital testing protocols, or research projects, rather than clinical concerns, were excluded. We constructed a testbed for sets of 1000 statistical trials and applied a stochastic injection process assuming lognormally distributed incubation periods to choose an alerting algorithm with the syndrome-required sensitivity and an alert rate within the specified acceptable range for each resulting syndrome. Alerting performance of the EARS C3 algorithm traditionally used by CEAH was compared to modified C2, CuSUM, and EWMA methods, with and without outlier removal and adjustments for the total weekly number of non-mandatory tests. The equine syndrome groups adopted for monitoring were abortion/reproductive, diarrhea/GI, necropsy, neurological, respiratory, systemic fungal, and tickborne. Data scales, seasonality, and variance differed widely among the weekly time series. Removal of mandatory and regulatory tests reduced weekly observed counts significantly—by >80% for diarrhea/GI syndrome. The RIU group studied outcomes associated with each syndrome and called for detection of single-week signals for most syndromes with expected false-alert intervals >8 and <52 weeks, 8-week signals for neurological and tickborne monitoring (requiring enhanced sensitivity), 6-week signals for respiratory, and 4-week signals for systemic fungal. From the test-bed trials, recommended methods, settings and thresholds were derived. Understanding of laboratory submission sources, laboratory workflow, and of syndrome-related outcomes are crucial to form syndrome groups for routine monitoring without artifactual alerting. Choices of methods, parameters, and thresholds varied by syndrome and depended strongly on veterinary epidemiologist-specified performance requirements.