Sami Kaappa
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Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Sami Kaappa has a total of 129 co-authors. Here are the top co-authors by number of shared publications:
- Hannu Häkkinen
Departments of Physics and Chemistry Nanoscience Center University of Jyväskylä Jyväskylä Finland
11 shared publications Sami Malola
Departments of Physics and Chemistry, Nanoscience Center, University of Jyväskylä, FI-40014, Jyväskylä, Finland
10 shared publications- Karsten Wedel Jacobsen
Technical University of Denmark
4 shared publications - Lasse Laurson
Tampere University
4 shared publications - Nanfeng Zheng
New Cornerstone Science Laboratory State Key Laboratory for Physical Chemistry of Solid Surfaces Collaborative Innovation Center of Chemistry for Energy Materials and National & Local Joint Engineering Research Center of Preparation Technology of Nanomaterials College of Chemistry and Chemical Engineering Xiamen University Xiamen China
3 shared publications Boon K. Teo
State Key Laboratory for Physical Chemistry of Solid Surfaces, Collaborative Innovation Center of Chemistry for Energy Materials, National & Local Joint Engineering Research Center for Preparation Technology of Nanomaterials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, China
2 shared publications
Latest Publications
- Open Access
- 21 March 2026
- Published by Elsevier in Materials Characterization
- Vol. 235
Electron holography and micromagnetic simulations unveil the magnetic domain structure of steel-embedded Fe3C carbides
- 21 March 2026
- Published by Elsevier in Materials Characterization
- Vol. 235
Open AccessElectron holography and micromagnetic simulations unveil the magnetic domain structure of steel-embedded Fe3C carbides
- Open Access
- 21 November 2024
- Published by Springer Nature in Communications Materials
- Vol. 5 (1) , 1-11
Magnetic domain walls interacting with dislocations in micromagnetic simulations
Defects, impurities, and embedded particles in ferromagnetic materials are long known to be responsible for the Barkhausen effect due to the jerky field-driven motion of domain walls and have more recently been shown to play a role also in domain wall dynamics in nanoscale ferromagnetic structures used in spintronics devices. Simulating the magnetic domain wall dynamics in the micromagnetic framework offers a straightforward route to study such systems and phenomena. However, the related work in the past suffers from material imperfections being introduced without proper physical foundation. Here, we implement dislocation stress fields in micromagnetic simulations through the induced anisotropy fields by inverse magnetostriction. The effects of individual dislocations on domain wall dynamics in thin films of different Fe surface lattice planes are characterized numerically. As a demonstration of the applicability of the implementation, we consider disorder fields due to randomly positioned dislocations with different densities, and study the avalanche-like transient approach towards the depinning transition of a domain wall driven by a slowly increasing external magnetic field.
- 21 November 2024
- Published by Springer Nature in Communications Materials
- Vol. 5 (1) , 1-11
Open AccessMagnetic domain walls interacting with dislocations in micromagnetic simulations
Defects, impurities, and embedded particles in ferromagnetic materials are long known to be responsible for the Barkhausen effect due to the jerky field-driven motion of domain walls and have more recently been shown to play a role also in domain wall dynamics in nanoscale ferromagnetic structures used in spintronics devices. Simulating the magnetic domain wall dynamics in the micromagnetic framework offers a straightforward route to study such systems and phenomena. However, the related work in the past suffers from material imperfections being introduced without proper physical foundation. Here, we implement dislocation stress fields in micromagnetic simulations through the induced anisotropy fields by inverse magnetostriction. The effects of individual dislocations on domain wall dynamics in thin films of different Fe surface lattice planes are characterized numerically. As a demonstration of the applicability of the implementation, we consider disorder fields due to randomly positioned dislocations with different densities, and study the avalanche-like transient approach towards the depinning transition of a domain wall driven by a slowly increasing external magnetic field.
- Top Cited PapersOpen Access
- 7 March 2024
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 160 (9)
GPAW: An open Python package for electronic structure calculations
We review the GPAW open-source Python package for electronic structure calculations. GPAW is based on the projector-augmented wave method and can solve the self-consistent density functional theory (DFT) equations using three different wave-function representations, namely real-space grids, plane waves, and numerical atomic orbitals. The three representations are complementary and mutually independent and can be connected by transformations via the real-space grid. This multi-basis feature renders GPAW highly versatile and unique among similar codes. By virtue of its modular structure, the GPAW code constitutes an ideal platform for the implementation of new features and methodologies. Moreover, it is well integrated with the Atomic Simulation Environment (ASE), providing a flexible and dynamic user interface. In addition to ground-state DFT calculations, GPAW supports many-body GW band structures, optical excitations from the Bethe–Salpeter Equation, variational calculations of excited states in molecules and solids via direct optimization, and real-time propagation of the Kohn–Sham equations within time-dependent DFT. A range of more advanced methods to describe magnetic excitations and non-collinear magnetism in solids are also now available. In addition, GPAW can calculate non-linear optical tensors of solids, charged crystal point defects, and much more. Recently, support for graphics processing unit (GPU) acceleration has been achieved with minor modifications to the GPAW code thanks to the CuPy library. We end the review with an outlook, describing some future plans for GPAW.
- 7 March 2024
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 160 (9)
Top Cited PapersOpen AccessGPAW: An open Python package for electronic structure calculations
We review the GPAW open-source Python package for electronic structure calculations. GPAW is based on the projector-augmented wave method and can solve the self-consistent density functional theory (DFT) equations using three different wave-function representations, namely real-space grids, plane waves, and numerical atomic orbitals. The three representations are complementary and mutually independent and can be connected by transformations via the real-space grid. This multi-basis feature renders GPAW highly versatile and unique among similar codes. By virtue of its modular structure, the GPAW code constitutes an ideal platform for the implementation of new features and methodologies. Moreover, it is well integrated with the Atomic Simulation Environment (ASE), providing a flexible and dynamic user interface. In addition to ground-state DFT calculations, GPAW supports many-body GW band structures, optical excitations from the Bethe–Salpeter Equation, variational calculations of excited states in molecules and solids via direct optimization, and real-time propagation of the Kohn–Sham equations within time-dependent DFT. A range of more advanced methods to describe magnetic excitations and non-collinear magnetism in solids are also now available. In addition, GPAW can calculate non-linear optical tensors of solids, charged crystal point defects, and much more. Recently, support for graphics processing unit (GPU) acceleration has been achieved with minor modifications to the GPAW code thanks to the CuPy library. We end the review with an outlook, describing some future plans for GPAW.
- Open Access
- 7 September 2023
- Published by Elsevier in Materials & Design
- Vol. 234
Multi-instrumental approach to domain walls and their movement in ferromagnetic steels – Origin of Barkhausen noise studied by microscopy techniques
- 7 September 2023
- Published by Elsevier in Materials & Design
- Vol. 234
Open AccessMulti-instrumental approach to domain walls and their movement in ferromagnetic steels – Origin of Barkhausen noise studied by microscopy techniques
- Open Access
- 6 April 2023
- Published by American Physical Society (APS) in Physical Review Research
- Vol. 5 (2) , L022006
Barkhausen noise from formation ofdomain walls in disordered permalloy thin filmsBarkhausen noise in disordered ferromagnets is typically understood to originate primarily from jerky field-driven motion of domain walls. We study the magnetization reversal process in disordered permalloy thin films using micromagnetic simulations and find that the magnetization reversal process consists of gradual formation of immobile domain walls via a sequence of localized magnetization rotation events. The density of domain walls formed within the sample as well as the statistical properties of the Barkhausen jumps are controlled by the disorder strength.- 6 April 2023
- Published by American Physical Society (APS) in Physical Review Research
- Vol. 5 (2) , L022006
Open AccessBarkhausen noise from formation ofdomain walls in disordered permalloy thin filmsBarkhausen noise in disordered ferromagnets is typically understood to originate primarily from jerky field-driven motion of domain walls. We study the magnetization reversal process in disordered permalloy thin films using micromagnetic simulations and find that the magnetization reversal process consists of gradual formation of immobile domain walls via a sequence of localized magnetization rotation events. The density of domain walls formed within the sample as well as the statistical properties of the Barkhausen jumps are controlled by the disorder strength. - 14 October 2021
- Published by American Physical Society (APS) in Physical Review Letters
- Vol. 127 (16) , 166001
Atomic Structure Optimization with Machine-Learning Enabled Interpolation between Chemical Elements
We introduce a computational method for global optimization of structure and ordering in atomic systems. The method relies on interpolation between chemical elements, which is incorporated in a machine-learning structural fingerprint. The method is based on Bayesian optimization with Gaussian processes and is applied to the global optimization of Au-Cu bulk systems, Cu-Ni surfaces with CO adsorption, and Cu-Ni clusters. The method consistently identifies low-energy structures, which are likely to be the global minima of the energy. For the investigated systems with 23–66 atoms, the number of required energy and force calculations is in the range 3–75.
- 14 October 2021
- Published by American Physical Society (APS) in Physical Review Letters
- Vol. 127 (16) , 166001
Atomic Structure Optimization with Machine-Learning Enabled Interpolation between Chemical Elements
We introduce a computational method for global optimization of structure and ordering in atomic systems. The method relies on interpolation between chemical elements, which is incorporated in a machine-learning structural fingerprint. The method is based on Bayesian optimization with Gaussian processes and is applied to the global optimization of Au-Cu bulk systems, Cu-Ni surfaces with CO adsorption, and Cu-Ni clusters. The method consistently identifies low-energy structures, which are likely to be the global minima of the energy. For the investigated systems with 23–66 atoms, the number of required energy and force calculations is in the range 3–75.
- 28 May 2021
- Published by American Physical Society (APS) in Physical Review B
- Vol. 103 (17) , 174114
Global optimization of atomic structures with gradient-enhanced Gaussian process regression
Determination of atomic structures is a key challenge in the fields of computational physics and materials science, as a large variety of mechanical, chemical, electronic, and optical properties depend sensitively on structure. Here, we present a global optimization scheme where energy and force information from density functional theory (DFT) calculations is transferred to a probabilistic surrogate model to estimate both the potential energy surface (PES) and the associated uncertainties. The local minima in the surrogate PES are then used to guide the search for the global minimum in the DFT potential. We find that adding the gradients in most cases improves the efficiency of the search significantly. The method is applied to global optimization of clusters with , and the surface structure of oxidized ZrN.- 28 May 2021
- Published by American Physical Society (APS) in Physical Review B
- Vol. 103 (17) , 174114
Global optimization of atomic structures with gradient-enhanced Gaussian process regression
Determination of atomic structures is a key challenge in the fields of computational physics and materials science, as a large variety of mechanical, chemical, electronic, and optical properties depend sensitively on structure. Here, we present a global optimization scheme where energy and force information from density functional theory (DFT) calculations is transferred to a probabilistic surrogate model to estimate both the potential energy surface (PES) and the associated uncertainties. The local minima in the surrogate PES are then used to guide the search for the global minimum in the DFT potential. We find that adding the gradients in most cases improves the efficiency of the search significantly. The method is applied to global optimization of clusters with , and the surface structure of oxidized ZrN.- 21 December 2020
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 153 (23) , 234116
Machine learning with bond information for local structure optimizations in surface science
Local optimization of adsorption systems inherently involves different scales: within the substrate, within the molecule, and between the molecule and the substrate. In this work, we show how the explicit modeling of different characteristics of the bonds in these systems improves the performance of machine learning methods for optimization. We introduce an anisotropic kernel in the Gaussian process regression framework that guides the search for the local minimum, and we show its overall good performance across different types of atomic systems. The method shows a speed-up of up to a factor of two compared with the fastest standard optimization methods on adsorption systems. Additionally, we show that a limited memory approach is not only beneficial in terms of overall computational resources but can also result in a further reduction of energy and force calculations.
- 21 December 2020
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 153 (23) , 234116
Machine learning with bond information for local structure optimizations in surface science
Local optimization of adsorption systems inherently involves different scales: within the substrate, within the molecule, and between the molecule and the substrate. In this work, we show how the explicit modeling of different characteristics of the bonds in these systems improves the performance of machine learning methods for optimization. We introduce an anisotropic kernel in the Gaussian process regression framework that guides the search for the local minimum, and we show its overall good performance across different types of atomic systems. The method shows a speed-up of up to a factor of two compared with the fastest standard optimization methods on adsorption systems. Additionally, we show that a limited memory approach is not only beneficial in terms of overall computational resources but can also result in a further reduction of energy and force calculations.
- 13 September 2019
- Published by Wiley in Angewandte Chemie International Edition
- Vol. 58 (49) , 17731-17735
Highly Robust but Surface‐Active: An N‐Heterocyclic Carbene‐Stabilized Au25 Nanocluster
Surface organic ligands play a critical role in stabilizing atomically precise metal nanoclusters in solutions. However, it is still challenging to prepare highly robust ligated metal nanoclusters that are surface‐active for liquid‐phase catalysis without any pre‐treatment. Now, an N‐heterocyclic carbene‐stabilized Au25 nanocluster with high thermal and air stabilities is presented as a homogenous catalyst for cycloisomerization of alkynyl amines to indoles. The nanocluster, characterized as [Au25(iPr2‐bimy)10Br7]2+ (iPr2‐bimy=1,3‐diisopropylbenzimidazolin‐2‐ylidene) (1), was synthesized by direct reduction of AuSMe2Cl and iPr2‐bimyAuBr with NaBH4 in one pot. X‐ray crystallization analysis revealed that the cluster comprises two centered Au13 icosahedra sharing a vertex. Cluster 1 is highly stable and can survive in solution at 80 °C for 12 h, which is superior to Au25 nanoclusters passivated with phosphines or thiols. DFT computations reveal the origins of both electronic and thermal stability of 1 and point to the probable catalytic sites. This work provides new insights into the bonding capability of N‐heterocyclic carbene to Au in a cluster, and offers an opportunity to probe the catalytic mechanism at the atomic level.
- 13 September 2019
- Published by Wiley in Angewandte Chemie International Edition
- Vol. 58 (49) , 17731-17735
Highly Robust but Surface‐Active: An N‐Heterocyclic Carbene‐Stabilized Au25 Nanocluster
Surface organic ligands play a critical role in stabilizing atomically precise metal nanoclusters in solutions. However, it is still challenging to prepare highly robust ligated metal nanoclusters that are surface‐active for liquid‐phase catalysis without any pre‐treatment. Now, an N‐heterocyclic carbene‐stabilized Au25 nanocluster with high thermal and air stabilities is presented as a homogenous catalyst for cycloisomerization of alkynyl amines to indoles. The nanocluster, characterized as [Au25(iPr2‐bimy)10Br7]2+ (iPr2‐bimy=1,3‐diisopropylbenzimidazolin‐2‐ylidene) (1), was synthesized by direct reduction of AuSMe2Cl and iPr2‐bimyAuBr with NaBH4 in one pot. X‐ray crystallization analysis revealed that the cluster comprises two centered Au13 icosahedra sharing a vertex. Cluster 1 is highly stable and can survive in solution at 80 °C for 12 h, which is superior to Au25 nanoclusters passivated with phosphines or thiols. DFT computations reveal the origins of both electronic and thermal stability of 1 and point to the probable catalytic sites. This work provides new insights into the bonding capability of N‐heterocyclic carbene to Au in a cluster, and offers an opportunity to probe the catalytic mechanism at the atomic level.
- Top Cited Papers
- 9 September 2019
- Published by American Chemical Society (ACS) in Journal of the American Chemical Society
- Vol. 141 (38) , 14997-15002
Robust, Highly Luminescent Au13 Superatoms Protected by N-Heterocyclic Carbenes
Gold superatom nanoclusters stabilized entirely by N-heterocyclic carbenes (NHCs) are reported. The reduction of well-defined NHC–Au–Cl complexes produces clusters com-prised of an icosahedral Au13 core surrounded by a symmetrical arrangement of 9 NHCs and 3 chlorides. X-ray crystallography shows that the clusters are characterized by multiple CH–π and π–π interactions, which rigidify the ligand and likely con-tribute to the exceptionally high photoluminescent quantum yields observed, up to 16.0 %, which is significantly greater than the most luminescent ligand-protected Au13 superatom cluster. Density functional theory analysis suggests that clus-ters are 8-electron superatoms with a wide HOMO-LUMO energy gap of 2 eV. Consistent with this, the clusters have high stability relative to all-phosphine clusters.
- 9 September 2019
- Published by American Chemical Society (ACS) in Journal of the American Chemical Society
- Vol. 141 (38) , 14997-15002
Top Cited PapersRobust, Highly Luminescent Au13 Superatoms Protected by N-Heterocyclic Carbenes
Gold superatom nanoclusters stabilized entirely by N-heterocyclic carbenes (NHCs) are reported. The reduction of well-defined NHC–Au–Cl complexes produces clusters com-prised of an icosahedral Au13 core surrounded by a symmetrical arrangement of 9 NHCs and 3 chlorides. X-ray crystallography shows that the clusters are characterized by multiple CH–π and π–π interactions, which rigidify the ligand and likely con-tribute to the exceptionally high photoluminescent quantum yields observed, up to 16.0 %, which is significantly greater than the most luminescent ligand-protected Au13 superatom cluster. Density functional theory analysis suggests that clus-ters are 8-electron superatoms with a wide HOMO-LUMO energy gap of 2 eV. Consistent with this, the clusters have high stability relative to all-phosphine clusters.