Diego Alexander Garzón Alvarado
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Diego Alexander Garzón Alvarado has a total of 163 co-authors. Here are the top co-authors by number of shared publications:
- Carlos Alberto Duque-Daza
Universidad Nacional de Colombia
11 shared publications - Juan Jairo Vaca-González
Universidad Nacional de Colombia
7 shared publications Salah Ramtani
BEST/CB3S, UMR CNRS 7244, Institut Galilée, Université Sorbonne Paris Nord, Villetaneuse, 93430, France
7 shared publications- Angelica Maria Ramirez Martinez
Facultad de ingeniería biomédica Universidad Militar Nueva Granada, Cajicá, Colombia
5 shared publications J.J. Vaca-González
Escuela de pregrado, Dirección Académica, Vicerrectoría de Sede, Universidad Nacional de Colombia, Sede la Paz, Cesar, 202017, Colombia
5 shared publications- María Lucia Guitierrez
Department of Morphological Sciences, School of Medicine, Pontificia Universidad Javeriana, Bogotá, Colombia
5 shared publications
Latest Publications
- Open Access
- 4 September 2026
- Published by MDPI AG in Mathematics
- Vol. 14 (17) , 3208
Temporal Spectral Analysis of Late-Time Error in a Physics-Informed Neural Network Solution of the One-Dimensional Advection–Diffusion Equation
Persistent late-time variation can remain in physics-informed neural network (PINN) solutions after the governing transient has effectively decayed, while conventional error norms do not reveal whether this variation has a systematic temporal–frequency structure. This study develops an offline temporal–spectral diagnostic and postprocessing workflow for a one-dimensional advection–diffusion benchmark. A high-accuracy analytical reference and three fixed-resolution finite-difference baselines are used to assess a PINN whose architecture is selected by a fully supervised neural architecture search and whose parameters are trained with progressive temporal windowing. Candidate late-time intervals are selected without using the reference solution by applying the Bayesian information criterion (BIC) to a breakpoint model for the inter-reconstruction sensitivity; the selected field is subsequently reconstructed by retaining a prescribed fraction of its temporal spectral energy and is evaluated independently through reference-error and physics-consistency measures. For , the zero-frequency component contains of the raw-field energy, so the reconstruction retains only the temporal mean. This projection reduces the final-time spatial error norm from to , a factor of approximately , while changing the discrete governing-equation residual by less than over the filtered window. Mean-removed tests for show that the discarded fluctuation is dominated by low-frequency approximation error rather than high-frequency noise. The result supports the proposed selection–validation workflow for this controlled benchmark but does not establish a universally transferable filter.- 4 September 2026
- Published by MDPI AG in Mathematics
- Vol. 14 (17) , 3208
Open AccessTemporal Spectral Analysis of Late-Time Error in a Physics-Informed Neural Network Solution of the One-Dimensional Advection–Diffusion Equation
Persistent late-time variation can remain in physics-informed neural network (PINN) solutions after the governing transient has effectively decayed, while conventional error norms do not reveal whether this variation has a systematic temporal–frequency structure. This study develops an offline temporal–spectral diagnostic and postprocessing workflow for a one-dimensional advection–diffusion benchmark. A high-accuracy analytical reference and three fixed-resolution finite-difference baselines are used to assess a PINN whose architecture is selected by a fully supervised neural architecture search and whose parameters are trained with progressive temporal windowing. Candidate late-time intervals are selected without using the reference solution by applying the Bayesian information criterion (BIC) to a breakpoint model for the inter-reconstruction sensitivity; the selected field is subsequently reconstructed by retaining a prescribed fraction of its temporal spectral energy and is evaluated independently through reference-error and physics-consistency measures. For , the zero-frequency component contains of the raw-field energy, so the reconstruction retains only the temporal mean. This projection reduces the final-time spatial error norm from to , a factor of approximately , while changing the discrete governing-equation residual by less than over the filtered window. Mean-removed tests for show that the discarded fluctuation is dominated by low-frequency approximation error rather than high-frequency noise. The result supports the proposed selection–validation workflow for this controlled benchmark but does not establish a universally transferable filter. - Open Access
- 4 May 2026
- Published by Springer Nature in Acta Biotheoretica
- Vol. 74 (3) , 15
Integration of Bone Remodeling and Damage Accumulation: A Preliminary Computational Framework for Physiological and Pathological Responses
This study presents a computational model that integrates bone remodeling dynamics with damage accumulation, focusing on both physiological and pathological conditions. Building upon Komarova’s classical model of osteoclast and osteoblast interactions, this work introduces fatigue-induced damage using a stress-life (S-N) approach. By simulating bone responses under sinusoidal and random mechanical loads, the model captures the cyclical nature of bone turnover. The results show that under normal physiological conditions, bone is able to repair microdamage and maintain structural integrity. However, in pathological scenarios such as osteoporosis and tumors, the remodeling cycle is disrupted, leading to an increase in damage accumulation and eventual structural failure. Through numerical simulations, the study also demonstrates the significant impact of fatigue on bone health, showing that repetitive mechanical loads, even below critical stress levels, can result in bone degradation over time. By capturing the accumulation of microdamage and its repair, the model offers potential applications in personalized medicine to assess fracture risks in varying stress and health scenarios. This approach provides a framework for understanding how different stress patterns contribute to bone damage and offers insights into the progression of bone diseases. The model could be extended using metabolic and age-related characteristics and serves as a potential tool for personalized medicine, helping to predict bone failure risks in individuals when they are submitted to repetitive mechanical loads.
- 4 May 2026
- Published by Springer Nature in Acta Biotheoretica
- Vol. 74 (3) , 15
Open AccessIntegration of Bone Remodeling and Damage Accumulation: A Preliminary Computational Framework for Physiological and Pathological Responses
This study presents a computational model that integrates bone remodeling dynamics with damage accumulation, focusing on both physiological and pathological conditions. Building upon Komarova’s classical model of osteoclast and osteoblast interactions, this work introduces fatigue-induced damage using a stress-life (S-N) approach. By simulating bone responses under sinusoidal and random mechanical loads, the model captures the cyclical nature of bone turnover. The results show that under normal physiological conditions, bone is able to repair microdamage and maintain structural integrity. However, in pathological scenarios such as osteoporosis and tumors, the remodeling cycle is disrupted, leading to an increase in damage accumulation and eventual structural failure. Through numerical simulations, the study also demonstrates the significant impact of fatigue on bone health, showing that repetitive mechanical loads, even below critical stress levels, can result in bone degradation over time. By capturing the accumulation of microdamage and its repair, the model offers potential applications in personalized medicine to assess fracture risks in varying stress and health scenarios. This approach provides a framework for understanding how different stress patterns contribute to bone damage and offers insights into the progression of bone diseases. The model could be extended using metabolic and age-related characteristics and serves as a potential tool for personalized medicine, helping to predict bone failure risks in individuals when they are submitted to repetitive mechanical loads.
- 18 April 2026
- Published by World Scientific Pub Co Pte Ltd in Journal of Mechanics in Medicine and Biology
- Vol. 26 (07)
WHAT IS THE INFLUENCE OF INTERCONNECTED GEOMETRIES ON TURING PATTERN FORMATION IN REACTION–DIFFUSION SYSTEMS USING THE SCHNAKENBERG MODEL?
The generation mechanisms of Turing patterns have proven to be instrumental in representing biological systems, particularly those involving morphogenesis and pigmentation. While reactiondiffusion models of the molecules responsible for these biological processes have been extensively studied, the impact of interconnected domains on Turing pattern formation remains unexplored. This article delves into the intricate dynamics of Turing pattern formation within interconnected reactiondiffusion systems using the Schnakenberg model. Two coupling mechanisms are examined: (a) diffusive partition walls with variable width (5-100%) and diffusivity (d = 0.1, 10), and (b) direct contact boundaries where domains share a common interface. We examine how partition walls and direct contact boundaries between domains influence the morphology and stability of the resulting patterns. Finite element simulations of modal combinations (1, 1), (2, 2), (3, 3), and (4, 4) demonstrate that interconnected domains exhibit pattern generation mechanisms fundamentally different from the classical ‘local activation and long-range inhibition’ paradigm. Specifically, we observe modal competition, where lower-frequency modes suppress higher-frequency ones, and critical thresholds beyond which pattern formation is completely inhibited, particularly when the partition width exceeds 50% at low diffusivity (d = 0.1). Direct contact boundaries generate greater morphological diversity, giving rise to lobe-shaped and triangular structures not present in isolated domains, indicating that the immediacy of interdomain interaction strongly influences pattern morphology. These findings provide insights into the self-organization mechanisms governing biological pattern formation and offer potential applications in understanding pigmentation patterns and morphogenesis. Furthermore, these results open new perspectives for exploring alternative geometrical configurations, heterogeneous diffusion processes, and the extension of reaction-diffusion models to both two- and three-dimensional interconnected domains.
- 18 April 2026
- Published by World Scientific Pub Co Pte Ltd in Journal of Mechanics in Medicine and Biology
- Vol. 26 (07)
WHAT IS THE INFLUENCE OF INTERCONNECTED GEOMETRIES ON TURING PATTERN FORMATION IN REACTION–DIFFUSION SYSTEMS USING THE SCHNAKENBERG MODEL?
The generation mechanisms of Turing patterns have proven to be instrumental in representing biological systems, particularly those involving morphogenesis and pigmentation. While reactiondiffusion models of the molecules responsible for these biological processes have been extensively studied, the impact of interconnected domains on Turing pattern formation remains unexplored. This article delves into the intricate dynamics of Turing pattern formation within interconnected reactiondiffusion systems using the Schnakenberg model. Two coupling mechanisms are examined: (a) diffusive partition walls with variable width (5-100%) and diffusivity (d = 0.1, 10), and (b) direct contact boundaries where domains share a common interface. We examine how partition walls and direct contact boundaries between domains influence the morphology and stability of the resulting patterns. Finite element simulations of modal combinations (1, 1), (2, 2), (3, 3), and (4, 4) demonstrate that interconnected domains exhibit pattern generation mechanisms fundamentally different from the classical ‘local activation and long-range inhibition’ paradigm. Specifically, we observe modal competition, where lower-frequency modes suppress higher-frequency ones, and critical thresholds beyond which pattern formation is completely inhibited, particularly when the partition width exceeds 50% at low diffusivity (d = 0.1). Direct contact boundaries generate greater morphological diversity, giving rise to lobe-shaped and triangular structures not present in isolated domains, indicating that the immediacy of interdomain interaction strongly influences pattern morphology. These findings provide insights into the self-organization mechanisms governing biological pattern formation and offer potential applications in understanding pigmentation patterns and morphogenesis. Furthermore, these results open new perspectives for exploring alternative geometrical configurations, heterogeneous diffusion processes, and the extension of reaction-diffusion models to both two- and three-dimensional interconnected domains.
- Open Access
- 25 December 2025
- Published by Elsevier in Journal of Orthopaedics
- Vol. 74, 79-90
Orthopedic implant surface modification with nanoengineered [YSZ/HAp-Ag]n multilayer coatings to promote osteoblast adhesion and early differentiation
- 25 December 2025
- Published by Elsevier in Journal of Orthopaedics
- Vol. 74, 79-90
Open AccessOrthopedic implant surface modification with nanoengineered [YSZ/HAp-Ag]n multilayer coatings to promote osteoblast adhesion and early differentiation
- 31 October 2025
- Published by Springer Nature in Acta Biotheoretica
- Vol. 73 (4) , 1-32
Computational Model of Bone Remodeling Integrating Osteocyte Mechanotransduction and Microdamage-Driven Self-Repair
Bone remodeling is a fundamental physiological process that maintains skeletal integrity through a tightly regulated balance between bone resorption and formation. Mathematical modeling provides a powerful framework for understanding the complex regulatory mechanisms underlying this process, particularly the interplay between biomechanical stimuli and cellular dynamics. This study introduces a new mathematical model of bone remodeling designed to capture the temporal evolution of key bone cell populations and their response to mechanical stimuli within a simplified yet biologically informed architecture. We formulate a system of coupled nonlinear ordinary differential equations to describe the dynamics of osteoclasts, osteoblasts, and osteocytes within a single basic multicellular unit (BMU). The model incorporates feedback regulation via strain energy density, allowing mechanical input to influence cellular activity and bone surface transitions. Initial conditions are assigned to reflect the sequential activation of bone remodeling phases. Physiological parameters are adopted from well-established literature, while non-sourced parameters are tuned to ensure model stability and biological plausibility. The simulations reproduce the canonical sequence of bone remodeling: initiation, resorption, reversal, and formation. The model captures the coupling between mechanical loading and cellular activity, demonstrating how osteocyte signaling can modulate the recruitment of osteoclasts and osteoblasts. The results also highlight the system’s capacity to stabilize around a dynamic equilibrium, sensitive to both internal parameters and external mechanical inputs. This model offers a minimal yet comprehensive representation of bone remodeling dynamics within a single BMU, integrating mechanical and biological controls into a unified mathematical structure. It provides a foundation for future extensions toward spatially distributed models and applications in mechanobiological simulation and computational bone health assessment.
- 31 October 2025
- Published by Springer Nature in Acta Biotheoretica
- Vol. 73 (4) , 1-32
Computational Model of Bone Remodeling Integrating Osteocyte Mechanotransduction and Microdamage-Driven Self-Repair
Bone remodeling is a fundamental physiological process that maintains skeletal integrity through a tightly regulated balance between bone resorption and formation. Mathematical modeling provides a powerful framework for understanding the complex regulatory mechanisms underlying this process, particularly the interplay between biomechanical stimuli and cellular dynamics. This study introduces a new mathematical model of bone remodeling designed to capture the temporal evolution of key bone cell populations and their response to mechanical stimuli within a simplified yet biologically informed architecture. We formulate a system of coupled nonlinear ordinary differential equations to describe the dynamics of osteoclasts, osteoblasts, and osteocytes within a single basic multicellular unit (BMU). The model incorporates feedback regulation via strain energy density, allowing mechanical input to influence cellular activity and bone surface transitions. Initial conditions are assigned to reflect the sequential activation of bone remodeling phases. Physiological parameters are adopted from well-established literature, while non-sourced parameters are tuned to ensure model stability and biological plausibility. The simulations reproduce the canonical sequence of bone remodeling: initiation, resorption, reversal, and formation. The model captures the coupling between mechanical loading and cellular activity, demonstrating how osteocyte signaling can modulate the recruitment of osteoclasts and osteoblasts. The results also highlight the system’s capacity to stabilize around a dynamic equilibrium, sensitive to both internal parameters and external mechanical inputs. This model offers a minimal yet comprehensive representation of bone remodeling dynamics within a single BMU, integrating mechanical and biological controls into a unified mathematical structure. It provides a foundation for future extensions toward spatially distributed models and applications in mechanobiological simulation and computational bone health assessment.
- 31 May 2025
- Published by Elsevier in Journal of Orthopaedics
- Vol. 68, 197-218
Modeling endochondral ossification: Effects of mechanical loading and bone shape
- 31 May 2025
- Published by Elsevier in Journal of Orthopaedics
- Vol. 68, 197-218
Modeling endochondral ossification: Effects of mechanical loading and bone shape
- Open Access
- 28 April 2025
- Published by Elsevier in Journal of Orthopaedics
- Vol. 63, 228-237
Exploring the impact of mechanical stimuli on growth plate morphology and trabecular adaptation: A finite element approach
- 28 April 2025
- Published by Elsevier in Journal of Orthopaedics
- Vol. 63, 228-237
Open AccessExploring the impact of mechanical stimuli on growth plate morphology and trabecular adaptation: A finite element approach
- 14 March 2025
- Published by Wiley in International Journal for Numerical Methods in Biomedical Engineering
- Vol. 41 (3) , e70024
Mechanobiological Model of Endochondral Ossification and Trabecular Bone Modeling
This work presents the integration of mechanobiological models to predict the natural evolution of bone modeling and remodeling processes to obtain the architecture of trabecular bone from the embryonic stage in mammalians. Bone modeling is simulated in two and three dimensions using a reaction–diffusion mechanism with parameters in Turing space. This approach involves the interaction of two molecular factors (VEGF and MMP13) released by hypertrophic chondrocytes that diffuse and interact within a hyaline cartilage matrix. The bone remodeling process follows the model proposed by Komarova et al. employing a set of differential equations to describe autocrine and paracrine interactions between osteoblastic and osteoclastic cells, determining cellular dynamics and changes in bone mass. Bidimensional and tridimensional results for a cartilage portion predict morphological self‐organization parameters between VEGF and MMP13, similar to those present in the architecture of immature trabecular bone. These findings suggest that the dynamic properties of molecular factors play a crucial role in the temporal self‐organization of bone mineralization metabolism, leading to a heterogeneous trabecular architecture characteristic of primary trabecular bone. Through the three‐dimensional bone remodeling model performed on the surface of trabeculae, it is established that equilibrium in population dynamics leads to asynchronous homeostatic remodeling for bone renewal, culminating in the formation of secondary trabecular bone.
- 14 March 2025
- Published by Wiley in International Journal for Numerical Methods in Biomedical Engineering
- Vol. 41 (3) , e70024
Mechanobiological Model of Endochondral Ossification and Trabecular Bone Modeling
This work presents the integration of mechanobiological models to predict the natural evolution of bone modeling and remodeling processes to obtain the architecture of trabecular bone from the embryonic stage in mammalians. Bone modeling is simulated in two and three dimensions using a reaction–diffusion mechanism with parameters in Turing space. This approach involves the interaction of two molecular factors (VEGF and MMP13) released by hypertrophic chondrocytes that diffuse and interact within a hyaline cartilage matrix. The bone remodeling process follows the model proposed by Komarova et al. employing a set of differential equations to describe autocrine and paracrine interactions between osteoblastic and osteoclastic cells, determining cellular dynamics and changes in bone mass. Bidimensional and tridimensional results for a cartilage portion predict morphological self‐organization parameters between VEGF and MMP13, similar to those present in the architecture of immature trabecular bone. These findings suggest that the dynamic properties of molecular factors play a crucial role in the temporal self‐organization of bone mineralization metabolism, leading to a heterogeneous trabecular architecture characteristic of primary trabecular bone. Through the three‐dimensional bone remodeling model performed on the surface of trabeculae, it is established that equilibrium in population dynamics leads to asynchronous homeostatic remodeling for bone renewal, culminating in the formation of secondary trabecular bone.
- Open Access
- 16 October 2024
- Published by Elsevier in Journal of Theoretical Biology
- Vol. 595, 111966
A bulk-surface mechanobiochemical modelling approach for single cell migration in two-space dimensions
- 16 October 2024
- Published by Elsevier in Journal of Theoretical Biology
- Vol. 595, 111966
Open AccessA bulk-surface mechanobiochemical modelling approach for single cell migration in two-space dimensions