Judith Klumperman

Neurons rely on precise biosynthetic protein transport from the soma to the axon and dendrites. Brain-enriched calsyntenins (CSTN1–3) are unique transmembrane adaptors that link cargo to kinesin-1 for transport. Yet, the neuronal distribution and interdependence of the three CSTN paralogs remain unclear. Here, we dissected their subcellular localization and contribution to biosynthetic protein transport. CSTN paralogs were predominantly localized to the TGN and axonal vesicles, with CSTN1 and CSTN3 showing higher expression levels than CSTN2. Depletion of either CSTN1 or CSTN3 affected axonal abundance of the other, suggesting that they function within the same pathway. Consistently, knockdown of CSTN1 or CSTN3, but not CSTN2, impaired the TGN exit and transport of multiple biosynthetic cargoes to the axon. Interestingly, most CSTN-positive vesicles exiting the TGN and in the axon were marked by the biosynthetic trafficking regulator RAB6A. Furthermore, we identified opposing, paralog-specific roles of CSTN1 and CSTN3 in regulating RAB6A levels at the TGN, thereby contributing to Golgi organization and axonal trafficking. Loss of CSTN1 reduced RAB6A and induced Golgi compaction, whereas loss of CSTN3 increased RAB6A and promoted Golgi dispersal. Together, we reveal that CSTN1 and CSTN3 have distinct, yet intersecting roles in the regulation of biosynthetic axonal transport.

The cyclin-dependent kinase CDK1 is a master regulator of cell cycle progression and the associated changes in cell shape. The biochemical functions of CDK1 have been primarily studied in cultured cells lacking adhesion to their neighbors. Within epithelial layers, cells are tightly connected, and cell cycle–associated shape changes must occur without compromising epithelial barrier function. Here, we showed that a pool of CDK1 localized to cell-cell contacts in cultured epithelial cells and phosphorylated substrates at cell-cell junctions throughout the cell cycle. CDK1 substrates identified by proteomic analysis included various components of adherens junctions, tight junctions, and desmosomes, as well as proteins that link cell-cell adhesion complexes to the actomyosin cytoskeleton. CDK1 activity maintained the linear organization of cell-cell junctions and was essential for preserving the integrity of the epithelial barrier. These findings expand the role of CDK1 to the regulation of cell-cell adhesion, establishing that the machinery that governs the cell cycle also controls epithelial integrity.

Chromogranin B (ChgB) is a major dense-core vesicle (DCV) matrix protein whose mechanistic role in DCV function remains ambiguous. To address this, we used CRISPR-Cas9-mediated genetic ablation, combined with quantitative microscopy and biochemical analyses, in PC12 and INS-1 cell lines and mouse models, demonstrating its essential role in DCV function. ChgB knockout cells exhibit severely impaired stimulus-coupled DCV exocytosis, while constitutive and synaptic-like vesicle secretion remain intact. Ultrastructural analyses reveal reduced dense-core area, altered vesicle numbers and sizes, and mislocalisation of DCVs away from the plasma membrane. ChgB deletion further causes Golgi fragmentation and prevents DCV cargo from entering the trans-Golgi network, delaying cargo exit. Subsequently, this possible effect, attributable to augmented endoplasmic reticulum stress, alters the SNARE signature and impairs full-fusion exocytosis. Finally, rescue experiments reversed defective sorting kinetics and exocytosis, suggesting a specific role of ChgB in DCV function. Together, these findings identify ChgB as a central regulator of DCV biogenesis, cargo sorting, and fusion competence.

Cadherin-based junctions establish dynamically regulated adhesion between cells to coordinate tissue integrity and morphogenetic movements. Adhesion strength can be modulated by the organization of individual cadherin complexes into lateral clusters. Here, we identify a clustering mechanism of the cadherin complex established by its core component β-catenin. We show that the disordered termini of β-catenin drive the formation of condensates that incorporate other components of the cadherin complex in vitro. Using β-catenin mutants with hampered condensation, we demonstrate that β-catenin condensation nucleates the formation of submicron cadherin/catenin clusters that further develop into stable sites of adhesion. Furthermore, we show that β-catenin-dependent clustering ensures the efficient formation of de novo cell-cell adhesions. Our data thus indicate a role for β-catenin condensates in the supramolecular organization of the cadherin complex, and reveal that the function of β-catenin in the cadherin complex extends beyond connecting cadherin to α-catenin and the actin cytoskeleton.

The endosomal Commander assembly associates with the sorting nexin-17 (SNX17) cargo adaptor to regulate cell surface recycling of internalised integral proteins including integrins and lipoprotein receptors. Here, we identify leucine rich melanocyte differentiation associated (LRMDA) as a Commander binding protein. We reveal that LRMDA and SNX17 share a common mechanism of Commander association, and that LRMDA simultaneously associates with Commander and active RAB32, establishing distinct RAB32-LRMDA-Commander and SNX17-Commander assemblies. Functional analysis in melanocytes reveals distinct roles for RAB32-LRMDA-Commander and SNX17-Commander in melanosome biogenesis. We reveal how LRMDA mutations, causative for oculocutaneous albinism type 7, a hypopigmentation disorder accompanied by poor visual acuity, uncouple RAB32 and Commander binding thereby establishing the mechanistic basis of this disease. Our discovery of this alternative Commander assembly highlights the plasticity of Commander function in human pigmentation and extends the Commander function beyond the SNX17-mediated regulation of cell surface proteome.

Amyloid precursor protein (APP) is a key player in various neuronal functions but also the source for toxic Aβ that accumulates in the brain of Alzheimer patients. APP trafficking and processing depend on the endo-lysosomal system, but the molecular mechanisms that coordinate these processes remain unclear. Here, we studied the HOPS complex, a central regulator of endo-lysosomal maturation. We show that HOPS disruption impairs retromer-mediated recycling of APP to the TGN, resulting in the accumulation of APP in late endosomes. In neurons, this accumulation is spatially restricted to somatodendritic endosomes. These APP-containing endosomes are catalytically inactive and lack the γ-secretase subunit PSEN2. However, they do contain BACE1, which leads to the build-up of toxic APP C-terminal fragments (APP-CTFs) upon HOPS disruption. Notably, loss of HOPS enhances secretion of APP-CTFs by exosomes, suggesting a potential mechanism for disease propagation. Together, our findings establish a mechanistic link between HOPS dysfunction and aberrant APP processing, with implications for neurodegeneration. Highlights: HOPS KO impairs retromer-mediated APP recycling to the TGN HOPS disruption redistributes APP to somatodendritic stationary late endosomes HOPS depletion increases APP and BACE1 convergence, causing APP-CTF accumulation These APP-CTFs accumulate in catalytically inactive endosomes that lack PSEN2 APP-CTFs are secreted via exosomes, potentially promoting disease propagation

Cadherin-based junctions establish dynamically regulated adhesion between cells to coordinate tissue integrity and morphogenetic movements. Adhesion strength can be modulated by the organization of individual cadherin complexes into lateral clusters. Here, we identify a novel clustering mechanism of the cadherin complex established by its core component β-catenin. We show that the disordered termini of β-catenin drive the formation of condensates that incorporate other components of the cadherin complex in vitro . Using β-catenin mutants with hampered condensation, we demonstrate that β-catenin condensation nucleates the formation of submicron cadherin/catenin clusters that further develop into stable sites of adhesion. Furthermore, we show that β-catenin-dependent clustering ensures the efficient formation of de novo cell-cell adhesions. Our data thus indicate a role for β-catenin condensates in the supramolecular organization of the cadherin complex, and reveal that the function of β-catenin in the cadherin complex extends beyond connecting cadherin to α-catenin and the actin cytoskeleton.

Legionella pneumophila is an intracellular pathogen that causes Legionnaires’ disease. The bacteria release effector proteins, some of which remodel host autophagic-lysosomal pathways. One such effector is RavZ, which delipidates ATG8 proteins, making compromising autophagy in Legionella-infected cells. Here we show that SidE effectors also affect these pathways, by mediating phosphoribosyl-ubiquitination (PR-Ub) of the autophagic SNARE proteins STX17 and SNAP29. STX17 modification induces recruitment of STX17-positive membranes from the endoplasmic reticulum to Legionella-containing phagosomes, forming replicative vacuoles. Using proximity labeling, biochemistry and Legionella infection studies, we define a mechanism by which autophagy is hijacked by bacteria to recruit ER membranes to the bacterial vacuole, via a structure bearing autophagy markers but not fusing with lysosomes. Mass-spectrometric identification of PR-Ub sites and mutational studies show that phosphoribosyl-ubiquitination of STX17 alters its interaction with ATG14L, which causes ER membranes to be recruited to the bacterial vacuole in a PI3K-dependent manner. On the other hand, phosphoribosyl-ubiquitination of SNAP29 inhibits the formation of the autophagosomal SNARE complex (STX17-SNAP29-VAMP8) via steric hindrance, thus preventing the fusion of bacterial vacuoles with lysosomes.