Aaron C. Ballagh
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Aaron C. Ballagh has a total of 90 co-authors. Here are the top co-authors by number of shared publications:
- Stephen J. Newman
Western Australian Fisheries and Marine Research Laboratories, Department of Primary Industries and Regional Development, Government of Western Australia, Hillarys, Australia
8 shared publications - Ashley John Williams
Australian Bureau of Agricultural and Resource Economics and Sciences, Department of Agriculture, Water and the Environment, Canberra, Australian Capital Territory 2601, Australia
5 shared publications David J. Welch
5 shared publicationsGavin A. Begg
4 shared publications- Leanne M. Currey-Randall
Australian Institute of Marine Science, Townsville, Australia
4 shared publications - Ossmat Azzam
International Rice Research Institute
4 shared publications
Latest Publications
- Open Access
- 15 March 2021
- Published by Springer Nature in Transgenic Research
- Vol. 30 (4) , 585-599
Mapping CRISPR-Cas9 public and commercial innovation using The Lens institutional toolkit
CRISPR-Cas9 is a revolutionary technology because it is precise, fast and easy to implement, cheap and components are readily accessible. This versatility means that the technology can deliver a timely end product and can be used by many stakeholders. In plant cells, the technology can be applied to knockout genes by using CRISPR–Cas nucleases that can alter coding gene regions or regulatory elements, alter precisely a genome by base editing to delete or regulate gene expression, edit precisely a genome by homology-directed repair mechanism (cellular DNA), or regulate transcriptional machinery by using dead Cas proteins to recruit regulators to the promoter region of a gene. All these applications can be for: 1) Research use (Non commercial), 2) Uses related product components for the technology itself (reagents, equipment, toolkits, vectors etc), and 3) Uses related to the development and sale of derived end products based on this technology. In this contribution, we present a prototype report that can engage the community in open, inclusive and collaborative innovation mapping. Using the open data at the Lens.org platform and other relevant sources, we tracked, analyzed, organized, and assembled contextual and bridged patent and scholarly knowledge about CRISPR-Cas9 and with the assistance of a new Lens institutional capability, The Lens Report Builder, currently in beta release, mapped the public and commercial innovation pathways of the technology. When scaled, this capability will also enable coordinated editing and curation by credentialed experts to inform policy makers, businesses and private or public investment.
- 15 March 2021
- Published by Springer Nature in Transgenic Research
- Vol. 30 (4) , 585-599
Open AccessMapping CRISPR-Cas9 public and commercial innovation using The Lens institutional toolkit
CRISPR-Cas9 is a revolutionary technology because it is precise, fast and easy to implement, cheap and components are readily accessible. This versatility means that the technology can deliver a timely end product and can be used by many stakeholders. In plant cells, the technology can be applied to knockout genes by using CRISPR–Cas nucleases that can alter coding gene regions or regulatory elements, alter precisely a genome by base editing to delete or regulate gene expression, edit precisely a genome by homology-directed repair mechanism (cellular DNA), or regulate transcriptional machinery by using dead Cas proteins to recruit regulators to the promoter region of a gene. All these applications can be for: 1) Research use (Non commercial), 2) Uses related product components for the technology itself (reagents, equipment, toolkits, vectors etc), and 3) Uses related to the development and sale of derived end products based on this technology. In this contribution, we present a prototype report that can engage the community in open, inclusive and collaborative innovation mapping. Using the open data at the Lens.org platform and other relevant sources, we tracked, analyzed, organized, and assembled contextual and bridged patent and scholarly knowledge about CRISPR-Cas9 and with the assistance of a new Lens institutional capability, The Lens Report Builder, currently in beta release, mapped the public and commercial innovation pathways of the technology. When scaled, this capability will also enable coordinated editing and curation by credentialed experts to inform policy makers, businesses and private or public investment.
- 22 February 2021
- Published by Springer Nature in Nature Biotechnology
- Vol. 39 (4) , 401-403
Mapping innovation trajectories on SARS-CoV-2 and its variants
- 22 February 2021
- Published by Springer Nature in Nature Biotechnology
- Vol. 39 (4) , 401-403
Mapping innovation trajectories on SARS-CoV-2 and its variants
- Open Access
- 6 August 2018
- Published by Springer Nature in Nature Biotechnology
- Vol. 36 (8) , 772
Erratum: Mapping the global influence of published research on industry and innovation
- 6 August 2018
- Published by Springer Nature in Nature Biotechnology
- Vol. 36 (8) , 772
Open AccessErratum: Mapping the global influence of published research on industry and innovation
- Open Access
- 10 January 2018
- Published by Springer Nature in Nature Biotechnology
- Vol. 36 (1) , 31-39
Mapping the global influence of published research on industry and innovation
Measuring citations to scholarly works in the global patent literature enables assessment of the influence of published research on invention, industry and enterprise, at the individual and institutional level.
- 10 January 2018
- Published by Springer Nature in Nature Biotechnology
- Vol. 36 (1) , 31-39
Open AccessMapping the global influence of published research on industry and innovation
Measuring citations to scholarly works in the global patent literature enables assessment of the influence of published research on invention, industry and enterprise, at the individual and institutional level.
- 7 March 2013
- Published by Wiley in Journal of Fish Biology
- Vol. 82 (3) , 764-788
Comparative biology of tropical Lethrinus species (Lethrinidae): challenges for multi‐species management
Life‐history characteristics of six tropical Lethrinus species sampled from the Great Barrier Reef World Heritage Area were compared. Two species groups were identified based on fork length (LF): large species with maximum LF > 640 mm (longface emperor Lethrinus olivaceus, yellowlip emperor Lethrinus xanthochilus and spangled emperor Lethrinus nebulosus) and small species with maximum LF < 480 mm (Pacific yellowtail emperor Lethrinus atkinsoni, pink ear emperor Lethrinus lentjan and ornate emperor Lethrinus ornatus). Lifespan was not correlated with LF. Early growth for all species was rapid and similar during the first few years of life, but coefficients of the von Bertalanffy growth function varied considerably among species. Growth also differed between sexes for L. atkinsoni. Reproductive characteristics varied among species, with peak periods of spawning occurring in November to December for L. atkinsoni, July to August for L. nebulous, September to October for L. olivaceus and a protracted season for L. lentjan, although fewer samples were available for the last two species. Sex‐specific LF and age distributions and gonad histology of L. lentjan were suggestive of a functional protogynous reproductive pattern, as observed in other lethrinids. Gonad histology indicated non‐functional protogynous hermaphroditism for L. atkinsoni and L. nebulosus. The diversity of life histories among these closely related species emphasizes the difficulty in devising single management strategies appropriate for multi‐species fisheries and illustrates the importance of understanding species‐specific life histories to infer responses to exploitation.
- 7 March 2013
- Published by Wiley in Journal of Fish Biology
- Vol. 82 (3) , 764-788
Comparative biology of tropical Lethrinus species (Lethrinidae): challenges for multi‐species management
Life‐history characteristics of six tropical Lethrinus species sampled from the Great Barrier Reef World Heritage Area were compared. Two species groups were identified based on fork length (LF): large species with maximum LF > 640 mm (longface emperor Lethrinus olivaceus, yellowlip emperor Lethrinus xanthochilus and spangled emperor Lethrinus nebulosus) and small species with maximum LF < 480 mm (Pacific yellowtail emperor Lethrinus atkinsoni, pink ear emperor Lethrinus lentjan and ornate emperor Lethrinus ornatus). Lifespan was not correlated with LF. Early growth for all species was rapid and similar during the first few years of life, but coefficients of the von Bertalanffy growth function varied considerably among species. Growth also differed between sexes for L. atkinsoni. Reproductive characteristics varied among species, with peak periods of spawning occurring in November to December for L. atkinsoni, July to August for L. nebulous, September to October for L. olivaceus and a protracted season for L. lentjan, although fewer samples were available for the last two species. Sex‐specific LF and age distributions and gonad histology of L. lentjan were suggestive of a functional protogynous reproductive pattern, as observed in other lethrinids. Gonad histology indicated non‐functional protogynous hermaphroditism for L. atkinsoni and L. nebulosus. The diversity of life histories among these closely related species emphasizes the difficulty in devising single management strategies appropriate for multi‐species fisheries and illustrates the importance of understanding species‐specific life histories to infer responses to exploitation.
- 1 June 2012
- Published by Elsevier in Fisheries Research
- Vol. 121-122, 63-72
Stock structure of the blue threadfin (Eleutheronema tetradactylum) across northern Australia derived from life-history characteristics
- 1 June 2012
- Published by Elsevier in Fisheries Research
- Vol. 121-122, 63-72
Stock structure of the blue threadfin (Eleutheronema tetradactylum) across northern Australia derived from life-history characteristics
- 2 March 2011
- Published by Wiley in Journal of Fish Biology
- Vol. 78 (3) , 923-936
Stock structure of blue threadfin Eleutheronema tetradactylum across northern Australia, as indicated by parasites
The parasite fauna of the blue threadfin Eleutheronema tetradactylum, collected from 14 sites across northern Australia, was examined to evaluate the degree of movement and subsequent stock structure of the fish. Univariate and multivariate analysis of nine ‘permanent’ parasite species [the nematodes Anisakis (type I) and Terranova (type II), the cestodes Otobothrium australe, Pterobothrium pearsoni, Pterobothrium sp. A, Callitetrarhynchus gracilis, Parotobothrium balli and Nybelinia sp., and the acanthocephalan Pomphorhynchus sp.] demonstrated little similarity between sites, indicating limited mixing and therefore long‐term separation of post‐juvenile fish. As such, the effects of fishing are likely to be localized within the current administrative boundaries, implying little need for interstate co‐operative management. Within each jurisdiction, management of E. tetradactylum populations, including the establishment of harvest strategies and fishery regulations, should be conducted in a way that recognizes the resident nature of the fish.
- 2 March 2011
- Published by Wiley in Journal of Fish Biology
- Vol. 78 (3) , 923-936
Stock structure of blue threadfin Eleutheronema tetradactylum across northern Australia, as indicated by parasites
The parasite fauna of the blue threadfin Eleutheronema tetradactylum, collected from 14 sites across northern Australia, was examined to evaluate the degree of movement and subsequent stock structure of the fish. Univariate and multivariate analysis of nine ‘permanent’ parasite species [the nematodes Anisakis (type I) and Terranova (type II), the cestodes Otobothrium australe, Pterobothrium pearsoni, Pterobothrium sp. A, Callitetrarhynchus gracilis, Parotobothrium balli and Nybelinia sp., and the acanthocephalan Pomphorhynchus sp.] demonstrated little similarity between sites, indicating limited mixing and therefore long‐term separation of post‐juvenile fish. As such, the effects of fishing are likely to be localized within the current administrative boundaries, implying little need for interstate co‐operative management. Within each jurisdiction, management of E. tetradactylum populations, including the establishment of harvest strategies and fishery regulations, should be conducted in a way that recognizes the resident nature of the fish.
- 5 January 2011
- Published by Wiley in Fisheries Management and Ecology
- Vol. 18 (3) , 246-257
Stock structure of blue threadfin Eleutheronema tetradactylum across northern Australia as inferred from stable isotopes in sagittal otolith carbonate
- 5 January 2011
- Published by Wiley in Fisheries Management and Ecology
- Vol. 18 (3) , 246-257
Stock structure of blue threadfin Eleutheronema tetradactylum across northern Australia as inferred from stable isotopes in sagittal otolith carbonate
- 1 December 2010
- Published by Elsevier in Journal of Experimental Marine Biology and Ecology
- Vol. 396 (1) , 53-60
Variation in stable isotope (δ18O and δ13C) signatures in the sagittal otolith carbonate of king threadfin, Polydactylus macrochir across northern Australia reveals multifaceted stock structure
- 1 December 2010
- Published by Elsevier in Journal of Experimental Marine Biology and Ecology
- Vol. 396 (1) , 53-60
Variation in stable isotope (δ18O and δ13C) signatures in the sagittal otolith carbonate of king threadfin, Polydactylus macrochir across northern Australia reveals multifaceted stock structure