James P. Long
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
James P. Long has a total of 446 co-authors. Here are the top co-authors by number of shared publications:
- Ehsan Irajizad
Department of Biostatistics, University of Texas MD Anderson Cancer Center , Houston, TX
44 shared publications - Jeffrey S. Weinberg
Department of Neurosurgery, The University of Texas MD Anderson Cancer Center, Houston, USA
44 shared publications - Kim-Anh Do
Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, USA
44 shared publications - Frederick F. Lang
Department of Neurosurgery, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA
42 shared publications - Samir Hanash
The University of Texas MD Anderson Cancer Center
42 shared publications - Sujit Prabhu
Department of Neurosurgery, The University of Texas MD Anderson Cancer Center, Houston, USA
42 shared publications
Latest Publications
- 25 September 2026
- Published by Springer Nature
- p. 35-44
A Real-World Evaluation of Failure Detection for Liver CT Segmentation
- 25 September 2026
- Published by Springer Nature
- p. 35-44
A Real-World Evaluation of Failure Detection for Liver CT Segmentation
- Open Access
- 7 September 2026
- Published by Wiley in Statistics in Medicine
- Vol. 45 (20-22)
Bias in Meta‐Analytic Modeling of Surrogate Endpoints in Cancer Screening Trials
In meta‐analytic modeling, the functional relationship between a primary and surrogate endpoint is estimated using summary data from a set of completed clinical trials. Parameters in the meta‐analytic model are used to assess the quality of the proposed surrogate. Recently, meta‐analytic models have been employed to evaluate whether late‐stage cancer incidence can serve as a surrogate for cancer mortality in cancer screening trials. A major challenge in meta‐analytic models is that uncertainty of trial‐level estimates affects the evaluation of surrogacy, since each trial provides only estimates of the primary and surrogate endpoints rather than their true parameter values. In this work, we show via simulation and theory that trial‐level estimate uncertainty may bias the results of meta‐analytic models toward positive findings of the quality of the surrogate. We focus on cancer screening trials and the late‐stage incidence surrogate. We reassess correlations between primary and surrogate endpoints in Ovarian cancer screening trials. Our findings indicate that completed trials provide limited information regarding quality of the late‐stage incidence surrogate. These results support restricting meta‐analytic regression usage to settings where trial‐level estimate uncertainty is incorporated into the model.
- 7 September 2026
- Published by Wiley in Statistics in Medicine
- Vol. 45 (20-22)
Open AccessBias in Meta‐Analytic Modeling of Surrogate Endpoints in Cancer Screening Trials
In meta‐analytic modeling, the functional relationship between a primary and surrogate endpoint is estimated using summary data from a set of completed clinical trials. Parameters in the meta‐analytic model are used to assess the quality of the proposed surrogate. Recently, meta‐analytic models have been employed to evaluate whether late‐stage cancer incidence can serve as a surrogate for cancer mortality in cancer screening trials. A major challenge in meta‐analytic models is that uncertainty of trial‐level estimates affects the evaluation of surrogacy, since each trial provides only estimates of the primary and surrogate endpoints rather than their true parameter values. In this work, we show via simulation and theory that trial‐level estimate uncertainty may bias the results of meta‐analytic models toward positive findings of the quality of the surrogate. We focus on cancer screening trials and the late‐stage incidence surrogate. We reassess correlations between primary and surrogate endpoints in Ovarian cancer screening trials. Our findings indicate that completed trials provide limited information regarding quality of the late‐stage incidence surrogate. These results support restricting meta‐analytic regression usage to settings where trial‐level estimate uncertainty is incorporated into the model.
- Open Access
A Real-World Evaluation of Failure Detection for Liver CT Segmentation
Deep learning models deployed in clinical imaging frequently encounter distribution shifts, yet most out-of-distribution (OOD) detection methods are evaluated only on controlled research datasets. As a result, it is unclear whether existing approaches can reliably identify segmentation failures that arise in real-world clinical practice. We evaluated six OOD detection methods on a deployed liver CT segmentation model (3D nnU-Net) using internal data from 400 patients and external data from 100 patients collected across nearly 70 sites in 7 countries. One method was Pairwise Surface DSC, a surface-based extension of Pairwise DSC, that we introduced. OOD performance was measured using sensitivity, AUROC, and balanced accuracy, with thresholds determined on an independent cohort of 400 patients using the Youden J statistic. Statistical significance was assessed using McNemar tests and stratified bootstraps ( α = 0.05) with Benjamini–Hochberg correction. Pairwise Surface DSC was the top-performing method, with perfect sensitivities (1.00), near-perfect AUROCs (0.97 internal; 1.00 external), and the highest balanced accuracies (0.94 internal; 0.88 external; p < 0.001). These results show that automated failure detection for liver CT segmentation is clinically feasible and that Pairwise Surface DSC is a promising candidate for deployment. Our code is available at https://github.com/mckellwoodland/liver_ct_ood_translation .
Open AccessA Real-World Evaluation of Failure Detection for Liver CT Segmentation
Deep learning models deployed in clinical imaging frequently encounter distribution shifts, yet most out-of-distribution (OOD) detection methods are evaluated only on controlled research datasets. As a result, it is unclear whether existing approaches can reliably identify segmentation failures that arise in real-world clinical practice. We evaluated six OOD detection methods on a deployed liver CT segmentation model (3D nnU-Net) using internal data from 400 patients and external data from 100 patients collected across nearly 70 sites in 7 countries. One method was Pairwise Surface DSC, a surface-based extension of Pairwise DSC, that we introduced. OOD performance was measured using sensitivity, AUROC, and balanced accuracy, with thresholds determined on an independent cohort of 400 patients using the Youden J statistic. Statistical significance was assessed using McNemar tests and stratified bootstraps ( α = 0.05) with Benjamini–Hochberg correction. Pairwise Surface DSC was the top-performing method, with perfect sensitivities (1.00), near-perfect AUROCs (0.97 internal; 1.00 external), and the highest balanced accuracies (0.94 internal; 0.88 external; p < 0.001). These results show that automated failure detection for liver CT segmentation is clinically feasible and that Pairwise Surface DSC is a promising candidate for deployment. Our code is available at https://github.com/mckellwoodland/liver_ct_ood_translation .
- Open Access
- 17 June 2026
- Published by American Association for Cancer Research (AACR)
Supplementary Table S26 from Systemic Immune Correlates of Long-term Survival after Delta-24-RGD Based on the Therapeutic Adenovirus for Recurrent Glioblastoma Effect Trial (TARGET)
Serious adverse events related to Delta-24-RGD in Delta-24-RGD via cannula cohort
- 17 June 2026
- Published by American Association for Cancer Research (AACR)
Open AccessSupplementary Table S26 from Systemic Immune Correlates of Long-term Survival after Delta-24-RGD Based on the Therapeutic Adenovirus for Recurrent Glioblastoma Effect Trial (TARGET)
Serious adverse events related to Delta-24-RGD in Delta-24-RGD via cannula cohort
- Open Access
- 17 June 2026
- Published by American Association for Cancer Research (AACR)
Supplementary Table S23 from Systemic Immune Correlates of Long-term Survival after Delta-24-RGD Based on the Therapeutic Adenovirus for Recurrent Glioblastoma Effect Trial (TARGET)
Summary of serious adverse events related to Delta-24-RGD across all cohorts
- 17 June 2026
- Published by American Association for Cancer Research (AACR)
Open AccessSupplementary Table S23 from Systemic Immune Correlates of Long-term Survival after Delta-24-RGD Based on the Therapeutic Adenovirus for Recurrent Glioblastoma Effect Trial (TARGET)
Summary of serious adverse events related to Delta-24-RGD across all cohorts
- Open Access
- 17 June 2026
- Published by American Association for Cancer Research (AACR)
Supplementary Table S1 from Systemic Immune Correlates of Long-term Survival after Delta-24-RGD Based on the Therapeutic Adenovirus for Recurrent Glioblastoma Effect Trial (TARGET)
195 VirScan peptides for similarity matrix
- 17 June 2026
- Published by American Association for Cancer Research (AACR)
Open AccessSupplementary Table S1 from Systemic Immune Correlates of Long-term Survival after Delta-24-RGD Based on the Therapeutic Adenovirus for Recurrent Glioblastoma Effect Trial (TARGET)
195 VirScan peptides for similarity matrix
- Open Access
- 17 June 2026
- Published by American Association for Cancer Research (AACR)
Supplementary Figure 3 from A Novel Sensitivity Maximization at a Given Specificity Method for Binary Classifications
Supplementary Figure 3 displays the ROC curves for two models applied to the test set of an imbalanced dataset, where SMAGS was fitted at different specificity thresholds. The top-left panel shows the sensitivity at 98.5% specificity, the top-right panel at 80% specificity, the bottom-left panel at 50% specificity, and the bottom-right panel at 5% specificity.
- 17 June 2026
- Published by American Association for Cancer Research (AACR)
Open AccessSupplementary Figure 3 from A Novel Sensitivity Maximization at a Given Specificity Method for Binary Classifications
Supplementary Figure 3 displays the ROC curves for two models applied to the test set of an imbalanced dataset, where SMAGS was fitted at different specificity thresholds. The top-left panel shows the sensitivity at 98.5% specificity, the top-right panel at 80% specificity, the bottom-left panel at 50% specificity, and the bottom-right panel at 5% specificity.
- Open Access
- 17 June 2026
- Published by American Association for Cancer Research (AACR)
Supplementary Table S19 from Systemic Immune Correlates of Long-term Survival after Delta-24-RGD Based on the Therapeutic Adenovirus for Recurrent Glioblastoma Effect Trial (TARGET)
Summary of serious adverse events across all cohorts
- 17 June 2026
- Published by American Association for Cancer Research (AACR)
Open AccessSupplementary Table S19 from Systemic Immune Correlates of Long-term Survival after Delta-24-RGD Based on the Therapeutic Adenovirus for Recurrent Glioblastoma Effect Trial (TARGET)
Summary of serious adverse events across all cohorts
- Open Access
- 17 June 2026
- Published by American Association for Cancer Research (AACR)
Supplementary Table S24 from Systemic Immune Correlates of Long-term Survival after Delta-24-RGD Based on the Therapeutic Adenovirus for Recurrent Glioblastoma Effect Trial (TARGET)
Serious adverse events related to Delta-24-RGD in Delta-24-RGD (standard) + IFN-γ cohort
- 17 June 2026
- Published by American Association for Cancer Research (AACR)
Open AccessSupplementary Table S24 from Systemic Immune Correlates of Long-term Survival after Delta-24-RGD Based on the Therapeutic Adenovirus for Recurrent Glioblastoma Effect Trial (TARGET)
Serious adverse events related to Delta-24-RGD in Delta-24-RGD (standard) + IFN-γ cohort
- Open Access
- 17 June 2026
- Published by American Association for Cancer Research (AACR)
Supplementary Figure S3 from Systemic Immune Correlates of Long-term Survival after Delta-24-RGD Based on the Therapeutic Adenovirus for Recurrent Glioblastoma Effect Trial (TARGET)
Dot plot with patients grouped by <= 9 month and > 9 month survival and assessed Anti-Adeno IgG levels (Wilcoxon P-value = 0.33. B. Scatterplot of Survival (continuous) versus Anti-Adeno IgG levels (continuous; Spearman rank correlation between variables is -0.23. P-value = 0.203).
- 17 June 2026
- Published by American Association for Cancer Research (AACR)
Open AccessSupplementary Figure S3 from Systemic Immune Correlates of Long-term Survival after Delta-24-RGD Based on the Therapeutic Adenovirus for Recurrent Glioblastoma Effect Trial (TARGET)
Dot plot with patients grouped by <= 9 month and > 9 month survival and assessed Anti-Adeno IgG levels (Wilcoxon P-value = 0.33. B. Scatterplot of Survival (continuous) versus Anti-Adeno IgG levels (continuous; Spearman rank correlation between variables is -0.23. P-value = 0.203).