Current Organizations / Institutes

The organizations/institutes from the scholar's latest article

Previous Organizations / Institutes

The organizations / institutes from the scholar's other articles in the past ten years


Rob Krams has a total of 180 co-authors. Here are the top co-authors by number of shared publications:

  • Ryan M. Pedrigi

    Department of Bioengineering, Imperial College London, Exhibition Road, London, SW7 2AZ, United Kingdom

    7 shared publications
  • Nataly Maimari

    Department of Bioengineering, Imperial College London, London, United Kingdom

    4 shared publications
  • Ranil de Silva

    National Heart and Lung Institute, Department of Medicine, Imperial College London, London SW3 6LR, UK

    4 shared publications
  • Zoltán Kis

    School of Chemical, Materials and Biological Engineering, University of Sheffield, Sheffield S1 3JD, UK

    4 shared publications
  • Christos Bourantas

    1 Department of Cardiology, Bart’s Heart Centre, Barts Health NHS Trust, London, United Kingdom

    3 shared publications
  • Leila Towhidi

    Department of Bioengineering , Imperial College London , London , UK

    3 shared publications

Latest Publications

  • Deep learning-based plaque characterization in hybrid IVUS-OCT images is superior to single-modality deep learning analysis and human experts: head-to-head comparison against histology

    by Retesh Bajaj, Xingru Huang, Natasha Alves-Kotzev, Jill J Weyers, Molly Levine, Mohil Garg, Mohamed Mohamed, Soe Maung, Ramya Parasa, Murat Çap, et al.

    Aims: Hybrid intravascular ultrasound-optical coherence tomography (IVUS-OCT) can enable more accurate plaque characterization than single-modality intravascular imaging, enhancing treatment planning and vulnerable plaque detection. However, image interpretation in IVUS-OCT is challenging and time-consuming. To overcome this limitation, we introduce a novel histology-trained deep learning (DL)-classifier for plaque component classification in IVUS-OCT images and compare its performance against single-modality DL and expert analysts. Methods and results: IVUS-OCT frames and matched histological sections from 10 cadaveric human hearts were included in this analysis. The histological data were used to define fibrotic, calcific, and necrotic core tissue regions of interest (ROIs) in IVUS-OCT and used to train three DL-classifiers for IVUS, OCT, or hybrid IVUS-OCT image analysis (992 frames) and test their performance (264 frames). The test set was additionally annotated by experts from three different core labs, and their estimations and those of the DL-classifiers were compared with histology. The IVUS-OCT DL-classifier had a superior performance to the IVUS-DL, OCT-DL, and the expert analysts in detecting plaque phenotypes (Kappa 0.60 vs. 0.19, 0.35, and 0.53, respectively) and accurately classified 68% of histologically defined fibroatheromas. The hybrid IVUS-OCT DL-classifier also had a better performance than single-modality DL-classifiers and the experts in assessing tissue types in ROIs annotated by histology (overall accuracy 86.7% compared with 73.2% for IVUS-DL, 66.6% for OCT-DL, and 70.6% for the experts). Conclusion: Plaque characterization using a histology-trained hybrid IVUS-OCT DL-classifier is feasible and enables more accurate detection of plaque components and phenotype classification than single-modality DL-classifiers and expert analysts.


  • Open Access

    Editorial: Computational modelling of cardiovascular hemodynamics and machine learning

    by Christos Bourantas, Ryo Torii, Sergey Karabasov, Rob Krams

    Editorial: Computational modelling of cardiovascular hemodynamics and machine learning


  • Open Access

    Assessment of the nano-mechanical properties of healthy and atherosclerotic coronary arteries by atomic force microscopy

    by Fotios Savvopoulos, Michael C. Keeling, Daniele Carassiti, Nicholas A. Fogell, Miten B. Patel, Jarka Naser, Núria Gavara, Ranil de Silva, Rob Krams

    Nano-indentation techniques might be better equipped to assess the heterogeneous material properties of plaques than macroscopic methods but there are no bespoke protocols for this kind of material testing for coronary arteries. Therefore, we developed a measurement protocol to extract mechanical properties from healthy and atherosclerotic coronary artery tissue sections. Young's modulus was derived from force-indentation data. Metrics of collagen fibre density were extracted from the same tissue, and the local material properties were co-registered to the local collagen microstructure with a robust framework. The locations of the indentation were retrospectively classified by histological category (healthy, plaque, lipid-rich, fibrous cap) according to Picrosirius Red stain and adjacent Hematoxylin & Eosin and Oil-Red-O stains. Plaque tissue was softer ( p < 0.001) than the healthy coronary wall. Areas rich in collagen within the plaque (fibrous cap) were significantly ( p < 0.001) stiffer than areas poor in collagen/lipid-rich, but less than half as stiff as the healthy coronary media. Young's moduli correlated (Pearson's ρ = 0.53, p < 0.05) with collagen content. Atomic force microscopy (AFM) is capable of detecting tissue stiffness changes related to collagen density in healthy and diseased cardiovascular tissue. Mechanical characterization of atherosclerotic plaques with nano-indentation techniques could refine constitutive models for computational modelling.


  • Open Access

    A physics-based machine learning technique rapidly reconstructs the wall-shear stress and pressure fields in coronary arteries

    by Benjamin Morgan, Amal Roy Murali, George Preston, Yidnekachew Ayele Sima, Luis Alberto Marcelo Chamorro, Christos Bourantas, Ryo Torii, Anthony Mathur, Andreas Baumbach, Marc C. Jacob, et al.

    With the global rise of cardiovascular disease including atherosclerosis, there is a high demand for accurate diagnostic tools that can be used during a short consultation. In view of pathology, abnormal blood flow patterns have been demonstrated to be strong predictors of atherosclerotic lesion incidence, location, progression, and rupture. Prediction of patient-specific blood flow patterns can hence enable fast clinical diagnosis. However, the current state of art for the technique is by employing 3D-imaging-based Computational Fluid Dynamics (CFD). The high computational cost renders these methods impractical. In this work, we present a novel method to expedite the reconstruction of 3D pressure and shear stress fields using a combination of a reduced-order CFD modelling technique together with non-linear regression tools from the Machine Learning (ML) paradigm. Specifically, we develop a proof-of-concept automated pipeline that uses randomised perturbations of an atherosclerotic pig coronary artery to produce a large dataset of unique mesh geometries with variable blood flow. A total of 1,407 geometries were generated from seven reference arteries and were used to simulate blood flow using the CFD solver Abaqus. This CFD dataset was then post-processed using the mesh-domain common-base Proper Orthogonal Decomposition (cPOD) method to obtain Eigen functions and principal coefficients, the latter of which is a product of the individual mesh flow solutions with the POD Eigenvectors. Being a data-reduction method, the POD enables the data to be represented using only the ten most significant modes, which captures cumulatively greater than 95% of variance of flow features due to mesh variations. Next, the node coordinate data of the meshes were embedded in a two-dimensional coordinate system using the t-distributed Stochastic Neighbor Embedding (t-SNE) algorithm. The reduced dataset for t-SNE coordinates and corresponding vector of POD coefficients were then used to train a Random Forest Regressor (RFR) model. The same methodology was applied to both the volumetric pressure solution and the wall shear stress. The predicted pattern of blood pressure, and shear stress in unseen arterial geometries were compared with the ground truth CFD solutions on “unseen” meshes. The new method was able to reliably reproduce the 3D coronary artery haemodynamics in less than 10 s.


  • Considerations for analysis of endothelial shear stress and strain in FSI models of atherosclerosis

    by Miten Patel, Fotios Savvopoulos, Caleb C. Berggren, Lydia Aslanidou, Lucas H. Timmins, Ranil de Silva, Ryan M. Pedrigi, Rob Krams


  • Mechanosensitive pathways are regulated by mechanosensitive miRNA clusters in endothelial cells

    by Sean Herault, Jarka Naser, Daniele Carassiti, K. Yean Chooi, Rosa Nikolopoulou, Marti Llopart Font, Miten Patel, Ryan Pedrigi, Rob Krams

    Shear stress is known to affect many processes in (patho-) physiology through a complex, multi-molecular mechanism, termed mechanotransduction. The sheer complexity of the process has raised questions how mechanotransduction is regulated. Here, we comprehensively evaluate the literature about the role of small non-coding miRNA in the regulation of mechanotransduction. Regulation of mRNA by miRNA is rather complex, depending not only on the concentration of mRNA to miRNA, but also on the amount of mRNA competing for a single mRNA. The only mechanism to counteract the latter factor is through overarching structures of miRNA. Indeed, two overarching structures are present miRNA families and miRNA clusters, and both will be discussed in details, regarding the latest literature and a previous conducted study focussed on mechanotransduction. Both the literature and our own data support a new hypothesis that miRNA-clusters predominantly regulate mechanotransduction, affecting 65% of signalling pathways. In conclusion, a new and important mode of regulation of mechanotransduction is proposed, based on miRNA clusters. This finding implicates new avenues for treatment of mechanotransduction and atherosclerosis.


  • Top Cited Papers
    Open Access

    Expert recommendations on the assessment of wall shear stress in human coronary arteries: existing methodologies, technical considerations, and clinical applications

    by Frank Gijsen, Yuki Katagiri, Peter Barlis, Christos Bourantas, Carlos Collet, Umit Coskun, Joost Daemen, Jouke Dijkstra, Elazer Edelman, Paul Evans, et al.


  • Open Access

    Disturbed flow induces a sustained, stochastic NF-κB activation which may support intracranial aneurysm growth in vivo

    by Daniel C. Baeriswyl, Ioanna Prionisti, Tom Peach, Grigoris Tsolkas, Kok Yean Chooi, John Vardakis, Sandrine Morel, Mannekomba R. Diagbouga, Philippe Bijlenga, Simon Cuhlmann, et al.

    Intracranial aneurysms are associated with disturbed velocity patterns, and chronic inflammation, but the relevance for these findings are currently unknown. Here, we show that (disturbed) shear stress induced by vortices is a sufficient condition to activate the endothelial NF-kB pathway, possibly through a mechanism of mechanosensor de-activation. We provide evidence for this statement through in-vitro live cell imaging of NF-kB in HUVECs exposed to different flow conditions, stochastic modelling of flow induced NF-kB activation and induction of disturbed flow in mouse carotid arteries. Finally, CFD and immunofluorescence on human intracranial aneurysms showed a correlation similar to the mouse vessels, suggesting that disturbed shear stress may lead to sustained NF-kB activation thereby offering an explanation for the close association between disturbed flow and intracranial aneurysms.


  • The emerging role of YAP/TAZ in mechanotransduction

    by Zahra Mohri, Armando Del Rio Hernandez, Rob Krams

    The emerging role of YAP/TAZ in mechanotransduction


  • COMPARISON OF IN VIVO OPTICAL COHERENCE TOMOGRAPHY DERIVED PLAQUE PHENOTYPE AND BURDEN WITH HISTOLOGY IN A PORCINE MODEL OF ADVANCED CORONARY ATHEROSCLEROSIS

    by Christian Bo Poulsen, Ryan Pedrigi, Niels Holm, Nilesh Pareek, Ismail Kilic, Anouk L. Post, Carlo Di Mario, Jacob Bentzon, Hans Botker, Erling Falk, et al.