Feng He
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Feng He has a total of 106 co-authors. Here are the top co-authors by number of shared publications:
- Jun Ma
Department of Obstetrics and Gynecology, the Fourth Affiliated Hospital of School of Medicine, Zhejiang University, Yiwu, China
11 shared publications - Jun Ma
Division of Biomedical Informatics, Cincinnati Children’s Research Foundation, 3333 Burnet Avenue, Cincinnati, OH 45229, USA
10 shared publications Renjie Jiao
State Key Laboratory of Brain and Cognitive Science, Institute of Biophysics, Chinese Academy of Sciences, 15 Datun Road, Beijing 100101, China
4 shared publicationsDavid Cheung
Division of Developmental Biology, Cincinnati Children's Research Foundation, Cincinnati, OH, USA
3 shared publications- Huanju Liu
Department of Medical Genetics, Naval Medical University, Shanghai, China
3 shared publications Ruoqing Xu
3 shared publications
Latest Publications
- Open Access
- 15 August 2026
- Published by Springer Nature in Cellular and Molecular Life Sciences
Bifurcation of stress granule fates under glycolytic inhibition enabled by association of OXPHOS gene transcripts with G3BP1
- 15 August 2026
- Published by Springer Nature in Cellular and Molecular Life Sciences
Open AccessBifurcation of stress granule fates under glycolytic inhibition enabled by association of OXPHOS gene transcripts with G3BP1
- Open Access
- 3 January 2026
- Published by Springer Nature in EMBO Reports
- Vol. 27 (3) , 748-773
An insulin receptor activity surge in follicle cells drives vitellogenesis by upregulating CrebA
Folliculogenesis is a process that requires accurate interpretation of female physiological cues and elaborate coordination between the growing oocyte and its surrounding follicle cells, each being capable of responding to external signals. Here, we investigate the role of insulin signaling in Drosophila follicle cells. Using a phase separation-based reporter system, we observe a surge of insulin receptor activity in follicle cells during vitellogenic stages, a surge that is disrupted by a maternal high-sucrose diet. Single-cell RNA-seq reveals a diet-sensitive subpopulation of stage-8 follicle cells, which exhibits a reduction in CrebA-mediated transcription of genes for yolk and vitelline membrane proteins. Our results suggest a critical role of CrebA in implementing the stage-specific effect of insulin signaling to boost the secretory capacity of follicle cells. Mechanistically, CrebA is directly repressed by nuclear FoxO that is subject to insulin control, a regulatory axis that we show is conserved in human granulosa cells. This study delineates a mechanism through which insulin and nutrient cues act on a developmental transition via modulating the biosynthetic and secretory functions of the ovary.
- 3 January 2026
- Published by Springer Nature in EMBO Reports
- Vol. 27 (3) , 748-773
Open AccessAn insulin receptor activity surge in follicle cells drives vitellogenesis by upregulating CrebA
Folliculogenesis is a process that requires accurate interpretation of female physiological cues and elaborate coordination between the growing oocyte and its surrounding follicle cells, each being capable of responding to external signals. Here, we investigate the role of insulin signaling in Drosophila follicle cells. Using a phase separation-based reporter system, we observe a surge of insulin receptor activity in follicle cells during vitellogenic stages, a surge that is disrupted by a maternal high-sucrose diet. Single-cell RNA-seq reveals a diet-sensitive subpopulation of stage-8 follicle cells, which exhibits a reduction in CrebA-mediated transcription of genes for yolk and vitelline membrane proteins. Our results suggest a critical role of CrebA in implementing the stage-specific effect of insulin signaling to boost the secretory capacity of follicle cells. Mechanistically, CrebA is directly repressed by nuclear FoxO that is subject to insulin control, a regulatory axis that we show is conserved in human granulosa cells. This study delineates a mechanism through which insulin and nutrient cues act on a developmental transition via modulating the biosynthetic and secretory functions of the ovary.
- Open Access
Stress granule sequestration of OXPHOS gene transcripts exacerbates glycolytic restriction
Stress granules (SGs) are dynamic organelles formed under cellular stress and they are generally regarded as protective entities. Meanwhile, their role in pathogenesis is becoming increasingly recognized, but the underlying mechanisms remain elusive due to the diverse nature of both stress types and biological contexts. Here we investigate SG dynamics and temporal changes in bulk and SG-associated transcriptomes under different regimens that inhibit glycolysis. We subject cells to either single assaults of glucose depletion (GD) or 2-deoxy-D-glucose addition (2DG) or a combined treatment (GD+2DG). We find that SGs formed under these conditions exhibit distinct properties, including eIF2α phosphorylation dependency, mRNA composition, and capacity to disassembly. Our results show that SGs induced by GD+2DG uniquely trap oxidative phosphorylation (OXPHOS) gene transcripts, leading to mitochondrial dysfunction. We provide evidence suggesting that the persistency of SGs formed under GD+2DG treatment is interwoven with mitochondrial dysfunction resulting in heightened apoptosis, effects that can also be recreated under single assaults when combined with mitochondrial inhibition. Our findings suggest that SG formation induced by inhibiting a single metabolic pathway can widen its impact in intensifying cellular metabolic stress under specific conditions, providing mechanistic insights into the paradoxical dual nature of SGs in stress response and pathology.
Open AccessStress granule sequestration of OXPHOS gene transcripts exacerbates glycolytic restriction
Stress granules (SGs) are dynamic organelles formed under cellular stress and they are generally regarded as protective entities. Meanwhile, their role in pathogenesis is becoming increasingly recognized, but the underlying mechanisms remain elusive due to the diverse nature of both stress types and biological contexts. Here we investigate SG dynamics and temporal changes in bulk and SG-associated transcriptomes under different regimens that inhibit glycolysis. We subject cells to either single assaults of glucose depletion (GD) or 2-deoxy-D-glucose addition (2DG) or a combined treatment (GD+2DG). We find that SGs formed under these conditions exhibit distinct properties, including eIF2α phosphorylation dependency, mRNA composition, and capacity to disassembly. Our results show that SGs induced by GD+2DG uniquely trap oxidative phosphorylation (OXPHOS) gene transcripts, leading to mitochondrial dysfunction. We provide evidence suggesting that the persistency of SGs formed under GD+2DG treatment is interwoven with mitochondrial dysfunction resulting in heightened apoptosis, effects that can also be recreated under single assaults when combined with mitochondrial inhibition. Our findings suggest that SG formation induced by inhibiting a single metabolic pathway can widen its impact in intensifying cellular metabolic stress under specific conditions, providing mechanistic insights into the paradoxical dual nature of SGs in stress response and pathology.
- Open Access
Dynamic p21-dependency during quiescence arrest unveiled by a rapid p21 depletion system
P21 inhibits CDK2 activity to induce quiescence in response to stress or developmental stimulation. It is currently unclear whether p21 exhibits an equal functional importance across different stages and states of the quiescence arrest. Here employing a rapid p21 degradation system, we evaluate the contribution of p21 across heterogeneous quiescence arrest states during quiescence progression. Our findings reveal that cells exhibit a dynamics dependency on p21 during quiescence arrest. At low levels of p21, quiescence is exclusively dependent on p21-mediated inhibition of CDK2 activity to prevent cell cycle progression. In contrast, when p21 accumulates to higher levels, quiescence transitions into an “auto-maintenance” state where p21 becomes less essential. Mechanistically, we found an active attenuation of the KRAS/ERK signalling pathway as a driver of reduced proliferation potential in this “auto-maintenance” state. This attenuation reinforces the robustness of quiescence through a mechanism that is independent of p21. Our results thus support a dynamic, adaptive mechanism for quiescence regulation that synchronizes the anti- and pro-proliferation signals. This mechanism is applicable over various stress or developmental quiescence context, offering a basis for cells to explore distinct quiescence states to achieve different degrees of robustness in cell cycle arrest.
Open AccessDynamic p21-dependency during quiescence arrest unveiled by a rapid p21 depletion system
P21 inhibits CDK2 activity to induce quiescence in response to stress or developmental stimulation. It is currently unclear whether p21 exhibits an equal functional importance across different stages and states of the quiescence arrest. Here employing a rapid p21 degradation system, we evaluate the contribution of p21 across heterogeneous quiescence arrest states during quiescence progression. Our findings reveal that cells exhibit a dynamics dependency on p21 during quiescence arrest. At low levels of p21, quiescence is exclusively dependent on p21-mediated inhibition of CDK2 activity to prevent cell cycle progression. In contrast, when p21 accumulates to higher levels, quiescence transitions into an “auto-maintenance” state where p21 becomes less essential. Mechanistically, we found an active attenuation of the KRAS/ERK signalling pathway as a driver of reduced proliferation potential in this “auto-maintenance” state. This attenuation reinforces the robustness of quiescence through a mechanism that is independent of p21. Our results thus support a dynamic, adaptive mechanism for quiescence regulation that synchronizes the anti- and pro-proliferation signals. This mechanism is applicable over various stress or developmental quiescence context, offering a basis for cells to explore distinct quiescence states to achieve different degrees of robustness in cell cycle arrest.
- 23 April 2024
- Published by Wolters Kluwer Health in Circulation
- Vol. 149 (17) , 1375-1390
Ptpn23 Controls Cardiac T-Tubule Patterning by Promoting the Assembly of Dystrophin-Glycoprotein Complex
BACKGROUND: Cardiac transverse tubules (T-tubules) are anchored to sarcomeric Z-discs by costameres to establish a regular spaced pattern. One of the major components of costameres is the dystrophin-glycoprotein complex (DGC). Nevertheless, how the assembly of the DGC coordinates with the formation and maintenance of T-tubules under physiological and pathological conditions remains unclear. METHODS: Given the known role of Ptpn23 (protein tyrosine phosphatase, nonreceptor type 23) in regulating membrane deformation, its expression in patients with dilated cardiomyopathy was determined. Taking advantage of Cre/Loxp, CRISPR/Cas9, and adeno-associated virus 9 (AAV9)–mediated in vivo gene editing, we generated cardiomyocyte-specific Ptpn23 and Actn2 (α-actinin-2, a major component of Z-discs) knockout mice. We also perturbed the DGC by using dystrophin global knockout mice ( Dmd E4* ). MM 4-64 and Di-8-ANEPPS staining, Cav3 immunofluorescence, and transmission electron microscopy were performed to determine T-tubule structure in isolated cells and intact hearts. In addition, the assembly of the DGC with Ptpn23 and dystrophin loss of function was determined by glycerol-gradient fractionation and SDS-PAGE analysis. RESULTS: The expression level of Ptpn23 was reduced in failing hearts from dilated cardiomyopathy patients and mice. Genetic deletion of Ptpn23 resulted in disorganized T-tubules with enlarged diameters and progressive dilated cardiomyopathy without affecting sarcomere organization. AAV9-mediated mosaic somatic mutagenesis further indicated a cell-autonomous role of Ptpn23 in regulating T-tubule formation. Genetic and biochemical analyses showed that Ptpn23 was essential for the integrity of costameres, which anchor the T-tubule membrane to Z-discs, through interactions with α-actinin and dystrophin. Deletion of α-actinin altered the subcellular localization of Ptpn23 and DGCs. In addition, genetic inactivation of dystrophin caused similar T-tubule defects to Ptpn23 loss-of-function without affecting Ptpn23 localization at Z-discs. Last, inducible Ptpn23 knockout at 1 month of age showed Ptpn23 is also required for the maintenance of T-tubules in adult cardiomyocytes. CONCLUSIONS: Ptpn23 is essential for cardiac T-tubule formation and maintenance along Z-discs. During postnatal heart development, Ptpn23 interacts with sarcomeric α-actinin and coordinates the assembly of the DGC at costameres to sculpt T-tubule spatial patterning and morphology.
- 23 April 2024
- Published by Wolters Kluwer Health in Circulation
- Vol. 149 (17) , 1375-1390
Ptpn23 Controls Cardiac T-Tubule Patterning by Promoting the Assembly of Dystrophin-Glycoprotein Complex
BACKGROUND: Cardiac transverse tubules (T-tubules) are anchored to sarcomeric Z-discs by costameres to establish a regular spaced pattern. One of the major components of costameres is the dystrophin-glycoprotein complex (DGC). Nevertheless, how the assembly of the DGC coordinates with the formation and maintenance of T-tubules under physiological and pathological conditions remains unclear. METHODS: Given the known role of Ptpn23 (protein tyrosine phosphatase, nonreceptor type 23) in regulating membrane deformation, its expression in patients with dilated cardiomyopathy was determined. Taking advantage of Cre/Loxp, CRISPR/Cas9, and adeno-associated virus 9 (AAV9)–mediated in vivo gene editing, we generated cardiomyocyte-specific Ptpn23 and Actn2 (α-actinin-2, a major component of Z-discs) knockout mice. We also perturbed the DGC by using dystrophin global knockout mice ( Dmd E4* ). MM 4-64 and Di-8-ANEPPS staining, Cav3 immunofluorescence, and transmission electron microscopy were performed to determine T-tubule structure in isolated cells and intact hearts. In addition, the assembly of the DGC with Ptpn23 and dystrophin loss of function was determined by glycerol-gradient fractionation and SDS-PAGE analysis. RESULTS: The expression level of Ptpn23 was reduced in failing hearts from dilated cardiomyopathy patients and mice. Genetic deletion of Ptpn23 resulted in disorganized T-tubules with enlarged diameters and progressive dilated cardiomyopathy without affecting sarcomere organization. AAV9-mediated mosaic somatic mutagenesis further indicated a cell-autonomous role of Ptpn23 in regulating T-tubule formation. Genetic and biochemical analyses showed that Ptpn23 was essential for the integrity of costameres, which anchor the T-tubule membrane to Z-discs, through interactions with α-actinin and dystrophin. Deletion of α-actinin altered the subcellular localization of Ptpn23 and DGCs. In addition, genetic inactivation of dystrophin caused similar T-tubule defects to Ptpn23 loss-of-function without affecting Ptpn23 localization at Z-discs. Last, inducible Ptpn23 knockout at 1 month of age showed Ptpn23 is also required for the maintenance of T-tubules in adult cardiomyocytes. CONCLUSIONS: Ptpn23 is essential for cardiac T-tubule formation and maintenance along Z-discs. During postnatal heart development, Ptpn23 interacts with sarcomeric α-actinin and coordinates the assembly of the DGC at costameres to sculpt T-tubule spatial patterning and morphology.
- Open Access
- 4 December 2023
- Published by Public Library of Science (PLoS) in PLOS Genetics
- Vol. 19 (12) , e1011081
A postmeiotically bifurcated roadmap of honeybee spermatogenesis marked by phylogenetically restricted genes
Haploid males of hymenopteran species produce gametes through an abortive meiosis I followed by meiosis II that can either be symmetric or asymmetric in different species. Thus, one spermatocyte could give rise to two spermatids with either equal or unequal amounts of cytoplasm. It is currently unknown what molecular features accompany these postmeiotic sperm cells especially in species with asymmetric meiosis II such as bees. Here we present testis single-cell RNA sequencing datasets from the honeybee (Apis mellifera) drones of 3 and 14 days after emergence (3d and 14d). We show that, while 3d testes exhibit active, ongoing spermatogenesis, 14d testes only have late-stage spermatids. We identify a postmeiotic bifurcation in the transcriptional roadmap during spermatogenesis, with cells progressing toward the annotated spermatids (SPT) and small spermatids (sSPT), respectively. Despite an overall similarity in their transcriptomic profiles, sSPTs express the fewest genes and the least RNA content among all the sperm cell types. Intriguingly, sSPTs exhibit a relatively high expression level for Hymenoptera-restricted genes and a high mutation load, suggesting that the special meiosis II during spermatogenesis in the honeybee is accompanied by phylogenetically young gene activities.
- 4 December 2023
- Published by Public Library of Science (PLoS) in PLOS Genetics
- Vol. 19 (12) , e1011081
Open AccessA postmeiotically bifurcated roadmap of honeybee spermatogenesis marked by phylogenetically restricted genes
Haploid males of hymenopteran species produce gametes through an abortive meiosis I followed by meiosis II that can either be symmetric or asymmetric in different species. Thus, one spermatocyte could give rise to two spermatids with either equal or unequal amounts of cytoplasm. It is currently unknown what molecular features accompany these postmeiotic sperm cells especially in species with asymmetric meiosis II such as bees. Here we present testis single-cell RNA sequencing datasets from the honeybee (Apis mellifera) drones of 3 and 14 days after emergence (3d and 14d). We show that, while 3d testes exhibit active, ongoing spermatogenesis, 14d testes only have late-stage spermatids. We identify a postmeiotic bifurcation in the transcriptional roadmap during spermatogenesis, with cells progressing toward the annotated spermatids (SPT) and small spermatids (sSPT), respectively. Despite an overall similarity in their transcriptomic profiles, sSPTs express the fewest genes and the least RNA content among all the sperm cell types. Intriguingly, sSPTs exhibit a relatively high expression level for Hymenoptera-restricted genes and a high mutation load, suggesting that the special meiosis II during spermatogenesis in the honeybee is accompanied by phylogenetically young gene activities.
- Open Access
- 16 November 2023
- Published by Cold Spring Harbor Laboratory in Genome Research
- Vol. 33 (12) , 2119-2132
tRNA-derived small RNAs are embedded in the gene regulatory network instructingDrosophilametamorphosis
A class of noncoding RNAs, referred to as tsRNAs, is emerging with a potential to exert a new layer in gene regulation. These RNAs are breakdown products of tRNAs, either through active processing or passive cleavage or both. Since tRNAs are part of the general machinery for translation, their expression levels and activities are tightly controlled, raising the possibility that their breakdown products, tsRNAs, may provide a link between the overall translational status of a cell to specific changes in gene regulatory network. We hypothesize thatDrosophilapupation, being a special developmental stage during which there is a global limitation of nutrients, represents a system in which such a link may readily reveal itself. We show that specific tsRNAs indeed show a dynamic accumulation upon entering the pupal stage. We describe experiments to characterize the mode of tsRNA action and, through the use of such gained knowledge, conduct a genome-wide analysis to assess the functions of dynamically expressed tsRNAs. Our results show that the predicted target genes are highly enriched in biological processes specific to this stage of development including metamorphosis. We further show that tsRNA action is required for successful pupation, providing direct support to the hypothesis that tsRNAs accumulated during this stage are critical to the gene expression program at this stage of development.
- 16 November 2023
- Published by Cold Spring Harbor Laboratory in Genome Research
- Vol. 33 (12) , 2119-2132
Open AccesstRNA-derived small RNAs are embedded in the gene regulatory network instructingDrosophilametamorphosis
A class of noncoding RNAs, referred to as tsRNAs, is emerging with a potential to exert a new layer in gene regulation. These RNAs are breakdown products of tRNAs, either through active processing or passive cleavage or both. Since tRNAs are part of the general machinery for translation, their expression levels and activities are tightly controlled, raising the possibility that their breakdown products, tsRNAs, may provide a link between the overall translational status of a cell to specific changes in gene regulatory network. We hypothesize thatDrosophilapupation, being a special developmental stage during which there is a global limitation of nutrients, represents a system in which such a link may readily reveal itself. We show that specific tsRNAs indeed show a dynamic accumulation upon entering the pupal stage. We describe experiments to characterize the mode of tsRNA action and, through the use of such gained knowledge, conduct a genome-wide analysis to assess the functions of dynamically expressed tsRNAs. Our results show that the predicted target genes are highly enriched in biological processes specific to this stage of development including metamorphosis. We further show that tsRNA action is required for successful pupation, providing direct support to the hypothesis that tsRNAs accumulated during this stage are critical to the gene expression program at this stage of development.
- Open Access
- 28 September 2023
- Published by Elsevier in Journal of Genetics and Genomics
- Vol. 51 (2) , 144-158
Unraveling the complexity of polycystic ovary syndrome with animal models
- 28 September 2023
- Published by Elsevier in Journal of Genetics and Genomics
- Vol. 51 (2) , 144-158
Open AccessUnraveling the complexity of polycystic ovary syndrome with animal models
- Open Access
Daughter cell fate choice instructed preemptively by mother cells facing nutrient limitation