Jeremy Fischer
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Interests
Jeremy Fischer has a total of 162 co-authors. Here are the top co-authors by number of shared publications:
Craig A. Stewart
Indiana University, Bloomington, USA
10 shared publications- David Y. Hancock
Indiana University, Bloomington, IN, USA
7 shared publications George Turner
5 shared publicationsJohn Michael Lowe
5 shared publications- Craig A. Stewart
Department of Computer Science Indiana University 47408 Bloomington IN USA
4 shared publications David Y. Hancock
4 shared publications
Latest Publications
- Open Access
- 21 May 2024
- Published by Institute of Electrical and Electronics Engineers (IEEE) in Computing in Science & Engineering
- Vol. 26 (3) , 9-19
Jetstream2: Research Clouds as a Convergence Accelerator
Over the past decade, the convergence of Cloud and High-Performance Computing (HPC) has undergone significant movement. We explore the evolution, motivations, and practicalities of establishing on-premise research cloud infrastructure and the complementary nature with HPC and commercial resources; under the belief that research clouds serve a unique role within research and education as a convergence accelerator. This role is highlighted through exploring the design tradeoffs in architecting research clouds versus HPC resources, focusing on the balance between utility, availability, and hardware utilization. The discussion provides insights from experiences with the National Science Foundation-supported Jetstream and Jetstream2 systems, showcasing convergence technologies and challenges. A variety of real-world use cases are provided that show the interplay between these computing paradigms; exploring use in research and education for interactive and iterative development, as an on-ramp to large-scale resources, as a powerful tool for education and workforce development, and for domain specific science gateways.
- 21 May 2024
- Published by Institute of Electrical and Electronics Engineers (IEEE) in Computing in Science & Engineering
- Vol. 26 (3) , 9-19
Open AccessJetstream2: Research Clouds as a Convergence Accelerator
Over the past decade, the convergence of Cloud and High-Performance Computing (HPC) has undergone significant movement. We explore the evolution, motivations, and practicalities of establishing on-premise research cloud infrastructure and the complementary nature with HPC and commercial resources; under the belief that research clouds serve a unique role within research and education as a convergence accelerator. This role is highlighted through exploring the design tradeoffs in architecting research clouds versus HPC resources, focusing on the balance between utility, availability, and hardware utilization. The discussion provides insights from experiences with the National Science Foundation-supported Jetstream and Jetstream2 systems, showcasing convergence technologies and challenges. A variety of real-world use cases are provided that show the interplay between these computing paradigms; exploring use in research and education for interactive and iterative development, as an on-ramp to large-scale resources, as a powerful tool for education and workforce development, and for domain specific science gateways.
- Open Access
- 7 May 2024
- Published by Springer Nature in Nature Methods
- Vol. 21 (6) , 1131
Author Correction: brainlife.io: a decentralized and open-source cloud platform to support neuroscience research
- 7 May 2024
- Published by Springer Nature in Nature Methods
- Vol. 21 (6) , 1131
Open AccessAuthor Correction: brainlife.io: a decentralized and open-source cloud platform to support neuroscience research
- Top Cited PapersOpen Access
- 11 April 2024
- Published by Springer Nature in Nature Methods
- Vol. 21 (5) , 809-813
brainlife.io: a decentralized and open-source cloud platform to support neuroscience research
Neuroscience is advancing standardization and tool development to support rigor and transparency. Consequently, data pipeline complexity has increased, hindering FAIR (findable, accessible, interoperable and reusable) access. brainlife.io was developed to democratize neuroimaging research. The platform provides data standardization, management, visualization and processing and automatically tracks the provenance history of thousands of data objects. Here, brainlife.io is described and evaluated for validity, reliability, reproducibility, replicability and scientific utility using four data modalities and 3,200 participants.
- 11 April 2024
- Published by Springer Nature in Nature Methods
- Vol. 21 (5) , 809-813
Top Cited PapersOpen Accessbrainlife.io: a decentralized and open-source cloud platform to support neuroscience research
Neuroscience is advancing standardization and tool development to support rigor and transparency. Consequently, data pipeline complexity has increased, hindering FAIR (findable, accessible, interoperable and reusable) access. brainlife.io was developed to democratize neuroimaging research. The platform provides data standardization, management, visualization and processing and automatically tracks the provenance history of thousands of data objects. Here, brainlife.io is described and evaluated for validity, reliability, reproducibility, replicability and scientific utility using four data modalities and 3,200 participants.
- Open Access
- 14 February 2023
- Published by Springer Nature in Scientometrics
- Vol. 128 (6) , 3225-3255
Use of accounting concepts to study research: return on investment in XSEDE, a US cyberinfrastructure service
This paper uses accounting concepts—particularly the concept of Return on Investment (ROI)—to reveal the quantitative value of scientific research pertaining to a major US cyberinfrastructure project (XSEDE—the eXtreme Science and Engineering Discovery Environment). XSEDE provides operational and support services for advanced information technology systems, cloud systems, and supercomputers supporting non-classified US research, with an average budget for XSEDE of US$20M+ per year over the period studied (2014–2021). To assess the financial effectiveness of these services, we calculated a proxy for ROI, and converted quantitative measures of XSEDE service delivery into financial values using costs for service from the US marketplace. We calculated two estimates of ROI: a Conservative Estimate, functioning as a lower bound and using publicly available data for a lower valuation of XSEDE services; and a Best Available Estimate, functioning as a more accurate estimate, but using some unpublished valuation data. Using the largest dataset assembled for analysis of ROI for a cyberinfrastructure project, we found a Conservative Estimate of ROI of 1.87, and a Best Available Estimate of ROI of 3.24. Through accounting methods, we show that XSEDE services offer excellent value to the US government, that the services offered uniquely by XSEDE (that is, not otherwise available for purchase) were the most valuable to the facilitation of US research activities, and that accounting-based concepts hold great value for understanding the mechanisms of scientific research generally.
- 14 February 2023
- Published by Springer Nature in Scientometrics
- Vol. 128 (6) , 3225-3255
Open AccessUse of accounting concepts to study research: return on investment in XSEDE, a US cyberinfrastructure service
This paper uses accounting concepts—particularly the concept of Return on Investment (ROI)—to reveal the quantitative value of scientific research pertaining to a major US cyberinfrastructure project (XSEDE—the eXtreme Science and Engineering Discovery Environment). XSEDE provides operational and support services for advanced information technology systems, cloud systems, and supercomputers supporting non-classified US research, with an average budget for XSEDE of US$20M+ per year over the period studied (2014–2021). To assess the financial effectiveness of these services, we calculated a proxy for ROI, and converted quantitative measures of XSEDE service delivery into financial values using costs for service from the US marketplace. We calculated two estimates of ROI: a Conservative Estimate, functioning as a lower bound and using publicly available data for a lower valuation of XSEDE services; and a Best Available Estimate, functioning as a more accurate estimate, but using some unpublished valuation data. Using the largest dataset assembled for analysis of ROI for a cyberinfrastructure project, we found a Conservative Estimate of ROI of 1.87, and a Best Available Estimate of ROI of 3.24. Through accounting methods, we show that XSEDE services offer excellent value to the US government, that the services offered uniquely by XSEDE (that is, not otherwise available for purchase) were the most valuable to the facilitation of US research activities, and that accounting-based concepts hold great value for understanding the mechanisms of scientific research generally.
- Open Access
- 13 May 2021
- Published by Public Library of Science (PLoS) in PLOS Computational Biology
- Vol. 17 (5) , e1008879
Ten simple rules to cultivate transdisciplinary collaboration in data science
- 13 May 2021
- Published by Public Library of Science (PLoS) in PLOS Computational Biology
- Vol. 17 (5) , e1008879
Open AccessTen simple rules to cultivate transdisciplinary collaboration in data science
- 8 May 2019
- Published by Taylor & Francis
- p. 189-222
Jetstream: A Novel Cloud System for Science
Jetstream 1 [45] is a first-of-a-kind cloud system funded by the National Science Foundation and by contributions from the several participants that created and now operate this system. It is a first-of-a-kind system in the sense that it is the first cloud system funded by the NSF accessible to and designed to be a resource for the national research community. Jetstream is also in a real sense a pilot project because the NSF has never before funded the creation of a cloud system. Proposing and implementing Jetstream was at times very much a process of putting a square peg into a round hole. Jetstream was funded through an NSF high performance computing (HPC) system acquisition solicitation, but the actual acquisition of the hardware from the vendor (Dell) was a small minority of the effort needed to put a cloud system into production.
- 8 May 2019
- Published by Taylor & Francis
- p. 189-222
Jetstream: A Novel Cloud System for Science
Jetstream 1 [45] is a first-of-a-kind cloud system funded by the National Science Foundation and by contributions from the several participants that created and now operate this system. It is a first-of-a-kind system in the sense that it is the first cloud system funded by the NSF accessible to and designed to be a resource for the national research community. Jetstream is also in a real sense a pilot project because the NSF has never before funded the creation of a cloud system. Proposing and implementing Jetstream was at times very much a process of putting a square peg into a round hole. Jetstream was funded through an NSF high performance computing (HPC) system acquisition solicitation, but the actual acquisition of the hardware from the vendor (Dell) was a small minority of the effort needed to put a cloud system into production.
- 1 January 2019
- Published by The Shodor Education Foundation, Inc. in The Journal of Computational Science Education
- Vol. 10 (1) , 107
Programmable Education Infrastructure: Cloud resources as HPC Education Environments
- 1 January 2019
- Published by The Shodor Education Foundation, Inc. in The Journal of Computational Science Education
- Vol. 10 (1) , 107
Programmable Education Infrastructure: Cloud resources as HPC Education Environments
- 2 September 2018
- Published by Wiley in Concurrency and Computation: Practice and Experience
- Vol. 31 (16)
Jetstream—Early operations performance, adoption, and impacts
Summary: Jetstream is a first of its kind system for the NSF — a distributed production cloud resource. We review the purpose for creating Jetstream, discuss Jetstream's key characteristics, describe our experiences from the first year of maintaining an OpenStack‐based cloud environment, and share some of the early scientific impacts achieved by Jetstream users. Jetstream offers a unique capability within the XSEDE‐supported US national cyberinfrastructure, delivering interactive virtual machines (VMs) via the Atmosphere interface. As a multi‐region deployment that operates as an integrated system, Jetstream is proving effective in supporting modes and disciplines of research traditionally underrepresented on larger XSEDE‐supported clusters and supercomputers. Already, Jetstream has been used to perform research and education in biology, biochemistry, atmospheric science, earth science, and computer science.
- 2 September 2018
- Published by Wiley in Concurrency and Computation: Practice and Experience
- Vol. 31 (16)
Jetstream—Early operations performance, adoption, and impacts
Summary: Jetstream is a first of its kind system for the NSF — a distributed production cloud resource. We review the purpose for creating Jetstream, discuss Jetstream's key characteristics, describe our experiences from the first year of maintaining an OpenStack‐based cloud environment, and share some of the early scientific impacts achieved by Jetstream users. Jetstream offers a unique capability within the XSEDE‐supported US national cyberinfrastructure, delivering interactive virtual machines (VMs) via the Atmosphere interface. As a multi‐region deployment that operates as an integrated system, Jetstream is proving effective in supporting modes and disciplines of research traditionally underrepresented on larger XSEDE‐supported clusters and supercomputers. Already, Jetstream has been used to perform research and education in biology, biochemistry, atmospheric science, earth science, and computer science.
- Open Access
- 22 July 2018
- Published by Association for Computing Machinery (ACM)
- p. 1-4
Scaling JupyterHub Using Kubernetes on Jetstream Cloud
- 22 July 2018
- Published by Association for Computing Machinery (ACM)
- p. 1-4
Open AccessScaling JupyterHub Using Kubernetes on Jetstream Cloud
- Open Access
- 22 July 2018
- Published by Association for Computing Machinery (ACM)
- p. 1-7
Methodologies and practices for adoption of a novel national research environment
- 22 July 2018
- Published by Association for Computing Machinery (ACM)
- p. 1-7
Open AccessMethodologies and practices for adoption of a novel national research environment