J. Daniel Fenn
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
J. Daniel Fenn has a total of 6 co-authors. Here are the top co-authors by number of shared publications:
- Anthony Brown
Department of Neuroscience, Ohio State University, Columbus, OH 43210
4 shared publications - Peter Jung
Ohio University
3 shared publications Christopher M. Johnson
Quantitative Biology Institute and Department of Physics and Astronomy Ohio University Athens Ohio 45701
2 shared publicationsJuan Peng
Center for Biostatistics and Department of Biomedical Informatics Ohio State University Columbus Ohio 43210
2 shared publicationsChristopher M Johnson
Ohio University, Athens, Ohio, 45701-2978, UNITED STATES
1 shared publicationPaula C. Monsma
Department of Neuroscience, Ohio State University, Columbus, Ohio, 43210
1 shared publication
Latest Publications
- 19 June 2020
- Published by IOP Publishing in Physical Biology
- Vol. 17 (4) , 046004
Dynamic catch-bonding generates the large stall forces of cytoplasmic dynein
Cytoplasmic dynein is an important molecular motor involved in the transport of vesicular and macromolecular cargo along microtubules in cells, often in conjunction with kinesin motors. Dynein is larger and more complex than kinesin and the mechanism and regulation of its movement is currently the subject of intense research. While it was believed for a long time that dynein motors are relatively weak in terms of the force they can generate, recent studies have shown that interactions with regulatory proteins confer large stall forces comparable to those of kinesin. This paper reports on a theoretical study which suggests that these large stall forces may be the result of an emergent, ATP-dependent, bistability resulting in a dynamic catch-bonding behavior that can cause the motor to switch between high and low load-force states.
- 19 June 2020
- Published by IOP Publishing in Physical Biology
- Vol. 17 (4) , 046004
Dynamic catch-bonding generates the large stall forces of cytoplasmic dynein
Cytoplasmic dynein is an important molecular motor involved in the transport of vesicular and macromolecular cargo along microtubules in cells, often in conjunction with kinesin motors. Dynein is larger and more complex than kinesin and the mechanism and regulation of its movement is currently the subject of intense research. While it was believed for a long time that dynein motors are relatively weak in terms of the force they can generate, recent studies have shown that interactions with regulatory proteins confer large stall forces comparable to those of kinesin. This paper reports on a theoretical study which suggests that these large stall forces may be the result of an emergent, ATP-dependent, bistability resulting in a dynamic catch-bonding behavior that can cause the motor to switch between high and low load-force states.
- 23 April 2018
- Published by Wiley in Cytoskeleton
- Vol. 75 (6) , 258-280
Axonal neurofilaments exhibit frequent and complex folding behaviors
Neurofilaments are flexible cytoskeletal polymers that are capable of folding and unfolding between their bouts of bidirectional movement along axons. Here we present a detailed characterization of this behavior in cultured neurons using kymograph analysis with approximately 30 ms temporal resolution. We analyzed 781 filaments ranging from 0.6‐42 µm in length. We observed complex behaviors including pinch folds, hairpin folds, orientation changes (flips), and occasional severing and annealing events. On average, the filaments spent approximately 40% of their time in some sort of folded configuration. A small proportion of filaments (4%) moved while folded, but most (96%) moved in an outstretched configuration. Collectively, our observations suggest that motors may interact with neurofilaments at multiple points along their length, but preferentially at their ends. In addition, the prevalence of neurofilament folding and the tendency of neurofilaments to straighten out when they move, suggest that an important function of the movement of these polymers in axons may be to maintain them in an outstretched and longitudinally co‐aligned configuration. Thus, neurofilament movement may function as much to organize these polymers as to move them, and this could explain why they spend so much time engaged in apparently unproductive bidirectional movement.
- 23 April 2018
- Published by Wiley in Cytoskeleton
- Vol. 75 (6) , 258-280
Axonal neurofilaments exhibit frequent and complex folding behaviors
Neurofilaments are flexible cytoskeletal polymers that are capable of folding and unfolding between their bouts of bidirectional movement along axons. Here we present a detailed characterization of this behavior in cultured neurons using kymograph analysis with approximately 30 ms temporal resolution. We analyzed 781 filaments ranging from 0.6‐42 µm in length. We observed complex behaviors including pinch folds, hairpin folds, orientation changes (flips), and occasional severing and annealing events. On average, the filaments spent approximately 40% of their time in some sort of folded configuration. A small proportion of filaments (4%) moved while folded, but most (96%) moved in an outstretched configuration. Collectively, our observations suggest that motors may interact with neurofilaments at multiple points along their length, but preferentially at their ends. In addition, the prevalence of neurofilament folding and the tendency of neurofilaments to straighten out when they move, suggest that an important function of the movement of these polymers in axons may be to maintain them in an outstretched and longitudinally co‐aligned configuration. Thus, neurofilament movement may function as much to organize these polymers as to move them, and this could explain why they spend so much time engaged in apparently unproductive bidirectional movement.
- 17 January 2018
- Published by Wiley in Cytoskeleton
- Vol. 75 (1)
Cover Image, Volume 75, Issue 1
- Open Access
- 19 September 2017
- Published by Wiley in Cytoskeleton
- Vol. 75 (1) , 22-41
Kymograph analysis with high temporal resolution reveals new features of neurofilament transport kinetics
We have used kymograph analysis combined with edge detection and an automated computational algorithm to analyze the axonal transport kinetics of neurofilament polymers in cultured neurons at 30 ms temporal resolution. We generated 301 kymographs from 136 movies and analyzed 726 filaments ranging from 0.6 to 42 µm in length, representing ∼37,000 distinct moving and pausing events. We found that the movement is even more intermittent than previously reported and that the filaments undergo frequent, often transient, reversals which suggest that they can engage simultaneously with both anterograde and retrograde motors. Average anterograde and retrograde bout velocities (0.9 and 1.2 µm s−1, respectively) were faster than previously reported, with maximum sustained bout velocities of up to 6.6 and 7.8 µm s−1, respectively. Average run lengths (∼1.1 µm) and run times (∼1.4 s) were in the range reported for molecular motor processivity in vitro, suggesting that the runs could represent the individual processive bouts of the neurofilament motors. Notably, we found no decrease in run velocity, run length or run time with increasing filament length, which suggests that either the drag on the moving filaments is negligible or that longer filaments recruit more motors.
- 19 September 2017
- Published by Wiley in Cytoskeleton
- Vol. 75 (1) , 22-41
Open AccessKymograph analysis with high temporal resolution reveals new features of neurofilament transport kinetics
We have used kymograph analysis combined with edge detection and an automated computational algorithm to analyze the axonal transport kinetics of neurofilament polymers in cultured neurons at 30 ms temporal resolution. We generated 301 kymographs from 136 movies and analyzed 726 filaments ranging from 0.6 to 42 µm in length, representing ∼37,000 distinct moving and pausing events. We found that the movement is even more intermittent than previously reported and that the filaments undergo frequent, often transient, reversals which suggest that they can engage simultaneously with both anterograde and retrograde motors. Average anterograde and retrograde bout velocities (0.9 and 1.2 µm s−1, respectively) were faster than previously reported, with maximum sustained bout velocities of up to 6.6 and 7.8 µm s−1, respectively. Average run lengths (∼1.1 µm) and run times (∼1.4 s) were in the range reported for molecular motor processivity in vitro, suggesting that the runs could represent the individual processive bouts of the neurofilament motors. Notably, we found no decrease in run velocity, run length or run time with increasing filament length, which suggests that either the drag on the moving filaments is negligible or that longer filaments recruit more motors.