Motohiro Shimanaga
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Motohiro Shimanaga has a total of 58 co-authors. Here are the top co-authors by number of shared publications:
Hidetaka Nomaki
Graduate School of Science and Technology, Kumamoto University, Kumamoto, Japan
6 shared publications- Tomo Kitahashi
Japan Agency for Marine-Earth Science and Technology (JAMSTEC)
5 shared publications - Hidetaka Nomaki
Institute for Extra-cutting-edge Science and Technology Avant-garde Research of Life (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan
3 shared publications - Hiromi Kayama Watanabe
X‐STAR, Japan Agency for Marine‐Earth Science and Technology (JAMSTEC) Yokosuka Kanagawa Japan
3 shared publications Hk Watanabe
2 shared publicationsKoji Inoue
The University of Tokyo
2 shared publications
Latest Publications
- 27 August 2026
- Published by Springer Nature in Marine Biodiversity
- Vol. 56 (5) , 84
A new Armorloricus (Loricifera: Nanaloricidae) from the Pacific Ocean and guidelines for describing new species based on Higgins larvae
- 27 August 2026
- Published by Springer Nature in Marine Biodiversity
- Vol. 56 (5) , 84
A new Armorloricus (Loricifera: Nanaloricidae) from the Pacific Ocean and guidelines for describing new species based on Higgins larvae
- Open Access
- 23 August 2025
- Published by Carcinological Society of Japan in Crustacean Research
- Vol. 54, 43-52
Spatiotemporal changes in community composition of benthic copepods around an eelgrass (Zostera marina) bed off Mategahama Beach, Kamishima Island, Amakusa Islands, Kyusyu
It is widely known that seagrass plants provide shelter to marine organisms. However, their effects on meiofaunal communities in the sediment around their shoots are still unknown. We investigated spatiotemporal changes in the community composition of benthic copepods in an eelgrass (Zostera marina) bed off the beach of Kamishima Island, which belongs to the Amakusa Islands. While no significant direct effect of grass shoots on copepods in the surrounding sediment at the centimeter scale was detected, their community compositions significantly changed between the seasons. Furthermore, proportions of mud in bottom sediment particles, which were larger when the eelgrass shoots were grown, were detected as the most important environmental factor controlling the copepod composition.
- 23 August 2025
- Published by Carcinological Society of Japan in Crustacean Research
- Vol. 54, 43-52
Open AccessSpatiotemporal changes in community composition of benthic copepods around an eelgrass (Zostera marina) bed off Mategahama Beach, Kamishima Island, Amakusa Islands, Kyusyu
It is widely known that seagrass plants provide shelter to marine organisms. However, their effects on meiofaunal communities in the sediment around their shoots are still unknown. We investigated spatiotemporal changes in the community composition of benthic copepods in an eelgrass (Zostera marina) bed off the beach of Kamishima Island, which belongs to the Amakusa Islands. While no significant direct effect of grass shoots on copepods in the surrounding sediment at the centimeter scale was detected, their community compositions significantly changed between the seasons. Furthermore, proportions of mud in bottom sediment particles, which were larger when the eelgrass shoots were grown, were detected as the most important environmental factor controlling the copepod composition.
- Open Access
- 30 May 2025
- Published by The Plankton Society of Japan/The Japanese Association of Benthology in Plankton and Benthos Research
- Vol. 20 (2) , 114-121
First insight of benthic meiofaunal communities and their associations with bottom sediment grain composition around mass aquaculture of fish in the northwestern Nagashima Island, Yatsushiro Sea, Kyushu
We evaluated preliminarily the spatial difference in meiofaunal community structure at higher taxonomic level and their association with sediment grain composition of the seafloor around several aquaculture nets in Nagashima Island, facing a strait connecting the Yatsushiro Sea. No significant difference in meiofauna community structure was detected between aquaculture sites and their adjacent sites. Statistical analyses revealed that the heterogeneities in sediment particles were the primary factors associated with 14% of the observed spatial changes in the meiofauna community structure: with increases in size and variances of sediment grains, the relative abundance of nematodes, which are usually the most abundant among meiofaunal taxa, decreased. On the other hand, the proportions of benthic copepods increased along the environmental gradients. This suggests that variations in interstitial space between sediment particles contribute to a certain degree to regulate meiofauna composition around the investigated aquaculture nets.
- 30 May 2025
- Published by The Plankton Society of Japan/The Japanese Association of Benthology in Plankton and Benthos Research
- Vol. 20 (2) , 114-121
Open AccessFirst insight of benthic meiofaunal communities and their associations with bottom sediment grain composition around mass aquaculture of fish in the northwestern Nagashima Island, Yatsushiro Sea, Kyushu
We evaluated preliminarily the spatial difference in meiofaunal community structure at higher taxonomic level and their association with sediment grain composition of the seafloor around several aquaculture nets in Nagashima Island, facing a strait connecting the Yatsushiro Sea. No significant difference in meiofauna community structure was detected between aquaculture sites and their adjacent sites. Statistical analyses revealed that the heterogeneities in sediment particles were the primary factors associated with 14% of the observed spatial changes in the meiofauna community structure: with increases in size and variances of sediment grains, the relative abundance of nematodes, which are usually the most abundant among meiofaunal taxa, decreased. On the other hand, the proportions of benthic copepods increased along the environmental gradients. This suggests that variations in interstitial space between sediment particles contribute to a certain degree to regulate meiofauna composition around the investigated aquaculture nets.
- Open Access
- 27 April 2023
- Published by Frontiers Media SA in Frontiers in Marine Science
- Vol. 10
Meiofauna in the southeastern Bering Sea: community composition and structuring environmental factors
The Bering Sea is the second largest marginal sea in the North Pacific and is one of the areas with highest biological productivity in high-latitude waters. The continental shelf of the Bering Sea hosts large populations of marine mammals and fishery resources. However, the smaller organisms in benthic ecosystems, including meiofauna, have been largely overlooked in this area, despite their potential importance in ecosystem functioning and the resultant biogeochemical cycles. This study analyzed spatial differences in the total abundance and community structure of the metazoan meiofauna at five stations around the Bering Canyon, located at the southeastern margin of the Bering Sea. Their association with environmental factors in sediments was also studied. The results confirmed that the investigated stations had meiofaunal standing stocks that were comparable to those of other Arctic seas. Among the investigated sediment biological and geochemical parameters (total organic carbon, median grain size, prokaryotic cell numbers, etc.), multivariate analyses showed that the C/N of organic matter in sediments was the main factor associated with meiofaunal community structure.
- 27 April 2023
- Published by Frontiers Media SA in Frontiers in Marine Science
- Vol. 10
Open AccessMeiofauna in the southeastern Bering Sea: community composition and structuring environmental factors
The Bering Sea is the second largest marginal sea in the North Pacific and is one of the areas with highest biological productivity in high-latitude waters. The continental shelf of the Bering Sea hosts large populations of marine mammals and fishery resources. However, the smaller organisms in benthic ecosystems, including meiofauna, have been largely overlooked in this area, despite their potential importance in ecosystem functioning and the resultant biogeochemical cycles. This study analyzed spatial differences in the total abundance and community structure of the metazoan meiofauna at five stations around the Bering Canyon, located at the southeastern margin of the Bering Sea. Their association with environmental factors in sediments was also studied. The results confirmed that the investigated stations had meiofaunal standing stocks that were comparable to those of other Arctic seas. Among the investigated sediment biological and geochemical parameters (total organic carbon, median grain size, prokaryotic cell numbers, etc.), multivariate analyses showed that the C/N of organic matter in sediments was the main factor associated with meiofaunal community structure.
- Open Access
- 2 March 2023
- Published by Cambridge University Press (CUP) in Journal of the Marine Biological Association of the United Kingdom
- Vol. 103, e21
Bacterivory of the hydrothermal-vent-specific copepod Stygiopontius senokuchiae (Dirivultidae, Siphonostomatoida) from copepodite through adult stages
Stygiopontius senokuchiae is a hydrothermal-vent-specific copepod species (Dirivultidae, Siphonostomatoida) and abundantly distributes near vent orifices. This species is thought to have an early juvenile planktic stage, and previous studies using bulk tissue stable-isotope and radioisotope data suggest that adults ingest chemoautotrophic microbes growing on vent chimneys. However, ontogenetic changes in their diets have not been investigated. We analysed gut contents of copepodite I to adult stages of S. senokuchiae collected from a hydrothermal-vent chimney at the Izu-Ogasawara Arc to check for the presence of bacterial cells in oral tubes and guts. We compared these results with an unidentified co-occurring calanoid and a species of Ectinosoma (Harpacticoida) and to other Siphonostomatoid copepods, namely Hatschekia labracis (Hatschekiidae), which was attached to a scarbreast tuskfin (Choerodon azurio, Labridae), and Asterocheres sp. 1 (Asterocheridae), which was attached to a spirastrellid sponge. Carbon isotope ratios of S. senokuchiae at different stages and Ectinosoma were measured to complement the nutritional insights obtained from gut-content analysis. Our results clearly showed that most S. senokuchiae individuals possessed bacteria in the oral tube or gut regardless of growth stage, whereas the coexisting Ectinosoma and calanoid did not. The carbon isotopic compositions confirmed that S. senokuchiae gains its nutrition from chemoautotrophic bacteria that use the rTCA carbon-fixation pathway. Comparisons with other Siphonostomatoida copepods suggest that Dirivultidae are specifically adapted to feed on bacteria at hydrothermal-vent chimneys, allowing their high dominance and evolutionary success in these habitats.
- 2 March 2023
- Published by Cambridge University Press (CUP) in Journal of the Marine Biological Association of the United Kingdom
- Vol. 103, e21
Open AccessBacterivory of the hydrothermal-vent-specific copepod Stygiopontius senokuchiae (Dirivultidae, Siphonostomatoida) from copepodite through adult stages
Stygiopontius senokuchiae is a hydrothermal-vent-specific copepod species (Dirivultidae, Siphonostomatoida) and abundantly distributes near vent orifices. This species is thought to have an early juvenile planktic stage, and previous studies using bulk tissue stable-isotope and radioisotope data suggest that adults ingest chemoautotrophic microbes growing on vent chimneys. However, ontogenetic changes in their diets have not been investigated. We analysed gut contents of copepodite I to adult stages of S. senokuchiae collected from a hydrothermal-vent chimney at the Izu-Ogasawara Arc to check for the presence of bacterial cells in oral tubes and guts. We compared these results with an unidentified co-occurring calanoid and a species of Ectinosoma (Harpacticoida) and to other Siphonostomatoid copepods, namely Hatschekia labracis (Hatschekiidae), which was attached to a scarbreast tuskfin (Choerodon azurio, Labridae), and Asterocheres sp. 1 (Asterocheridae), which was attached to a spirastrellid sponge. Carbon isotope ratios of S. senokuchiae at different stages and Ectinosoma were measured to complement the nutritional insights obtained from gut-content analysis. Our results clearly showed that most S. senokuchiae individuals possessed bacteria in the oral tube or gut regardless of growth stage, whereas the coexisting Ectinosoma and calanoid did not. The carbon isotopic compositions confirmed that S. senokuchiae gains its nutrition from chemoautotrophic bacteria that use the rTCA carbon-fixation pathway. Comparisons with other Siphonostomatoida copepods suggest that Dirivultidae are specifically adapted to feed on bacteria at hydrothermal-vent chimneys, allowing their high dominance and evolutionary success in these habitats.
- 1 September 2021
- Published by Cambridge University Press (CUP) in Journal of the Marine Biological Association of the United Kingdom
- Vol. 101 (6) , 947-956
Simple harpacticoid composition observed at deep hydrothermal vent sites on sea knoll calderas in the North-west Pacific
Dirivultid copepods (Siphonostomatoida), one of the most successful meiobenthic organisms found at deep-sea hydrothermal vents, have been the focus of most previous ecological studies among meiofauna in these habitats. The ecology of Harpacticoida, a major benthic copepod group in typical deep-sea floor, however, is not well understood in terms of variations in community structure and controlling factors at venting sites. The spatial heterogeneities in benthic harpacticoid composition and their association with environmental parameters were investigated at hydrothermal vent chimney structures in the calderas of three neighbouring sea knolls (Bayonnaise Knoll, Myojin Knoll and Myojin-sho Caldera) in the western North Pacific. While a previous study had reported the distribution of dirivultids was strongly associated with spatial differences in stable carbon isotopic signatures (δ13C) of organic matter in the detritus on active chimneys in the field, multivariate analyses detected no significant corelation between the parameter and harpacticoid composition in this study. Instead, high associations of the harpacticoid composition with differences in water depth and total organic carbon (TOC) concentration were detected. Ectinosomatidae dominated at vent sites with lower TOC values in the shallowest Bayonnaise Knoll, while they were less prevalent at deeper vent fields in the other knolls, where Miraciidae was the most abundant family. This study indicated the availability of vent chemoautotrophic carbon is not a primary factor controlling the composition of harpacticoids even in the habitats on the hydrothermal vents, but instead by the food amount, regardless of its resources (including marine snow from the sea surface), in the study area.
- 1 September 2021
- Published by Cambridge University Press (CUP) in Journal of the Marine Biological Association of the United Kingdom
- Vol. 101 (6) , 947-956
Simple harpacticoid composition observed at deep hydrothermal vent sites on sea knoll calderas in the North-west Pacific
Dirivultid copepods (Siphonostomatoida), one of the most successful meiobenthic organisms found at deep-sea hydrothermal vents, have been the focus of most previous ecological studies among meiofauna in these habitats. The ecology of Harpacticoida, a major benthic copepod group in typical deep-sea floor, however, is not well understood in terms of variations in community structure and controlling factors at venting sites. The spatial heterogeneities in benthic harpacticoid composition and their association with environmental parameters were investigated at hydrothermal vent chimney structures in the calderas of three neighbouring sea knolls (Bayonnaise Knoll, Myojin Knoll and Myojin-sho Caldera) in the western North Pacific. While a previous study had reported the distribution of dirivultids was strongly associated with spatial differences in stable carbon isotopic signatures (δ13C) of organic matter in the detritus on active chimneys in the field, multivariate analyses detected no significant corelation between the parameter and harpacticoid composition in this study. Instead, high associations of the harpacticoid composition with differences in water depth and total organic carbon (TOC) concentration were detected. Ectinosomatidae dominated at vent sites with lower TOC values in the shallowest Bayonnaise Knoll, while they were less prevalent at deeper vent fields in the other knolls, where Miraciidae was the most abundant family. This study indicated the availability of vent chemoautotrophic carbon is not a primary factor controlling the composition of harpacticoids even in the habitats on the hydrothermal vents, but instead by the food amount, regardless of its resources (including marine snow from the sea surface), in the study area.
- 23 April 2020
- Published by Springer Nature in Journal of Oceanography
- Vol. 76 (5) , 341-350
Sex ratio of Stygiopontius senokuchiae (Dirivultidae, Copepoda), an endemic copepod species at deep hydrothermal vent sites, is biased to males
- 23 April 2020
- Published by Springer Nature in Journal of Oceanography
- Vol. 76 (5) , 341-350
Sex ratio of Stygiopontius senokuchiae (Dirivultidae, Copepoda), an endemic copepod species at deep hydrothermal vent sites, is biased to males
- Open Access
- 18 July 2019
- Published by Inter-Research Science Center in Marine Ecology Progress Series
- Vol. 622, 49-65
Nutritional sources of meio- and macrofauna at hydrothermal vents and adjacent areas: natural-abundance radiocarbon and stable isotope analyses
- 18 July 2019
- Published by Inter-Research Science Center in Marine Ecology Progress Series
- Vol. 622, 49-65
Open AccessNutritional sources of meio- and macrofauna at hydrothermal vents and adjacent areas: natural-abundance radiocarbon and stable isotope analyses
- 11 June 2019
- Published by Springer Nature in Journal of Oceanography
- Vol. 75 (6) , 475-484
First insight of bathymetric patterns among deep-sea harpacticoid diversity and composition on landward slopes of subduction zones along the Japanese island arc
- 11 June 2019
- Published by Springer Nature in Journal of Oceanography
- Vol. 75 (6) , 475-484
First insight of bathymetric patterns among deep-sea harpacticoid diversity and composition on landward slopes of subduction zones along the Japanese island arc