Alexander Haragan
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Alexander Haragan has a total of 26 co-authors. Here are the top co-authors by number of shared publications:
- Aaron M. Gruver
Eli Lilly and Company, Indianapolis, IN 46285, USA
3 shared publications - John Kirkpatrick Field
Molecular and Clinical Cancer Medicine, University of Liverpool, Liverpool, United Kingdom
2 shared publications John R Gosney
Institute of Systems, Molecular and Integrative Biology University of Liverpool Liverpool UK
2 shared publications- John R. Gosney
Department of Cellular Pathology Royal Liverpool University Hospital Liverpool United Kingdom
2 shared publications - Michael Peter Alan Davies
Molecular and Clinical Cancer Medicine, University of Liverpool, Liverpool, United Kingdom
2 shared publications Andrew Dodson
UK Natl External Qual Assessment Scheme ICC & ISH, London, England
1 shared publication
Latest Publications
- Open Access
- 25 August 2025
- Published by Wiley in The Journal of Pathology: Clinical Research
- Vol. 11 (5) , e70041
Assessing PD‐L1 expression in non‐small cell lung carcinoma: a prospective study of matched fine‐needle aspirates, core biopsies, and resection specimens using alcohol and forming fixatives
PD‐L1 expression for the prediction of response to immune‐checkpoint blockade remains the most broadly utilised clinically validated biomarker in a range of tumour types. In this study, we aimed to assess, in a prospectively collected matched cohort, the impact of sampling technique and both formalin and alcohol fixation on PD‐L1 expression and heterogeneity in non‐small cell lung carcinoma (NSCLC). Patients undergoing surgical resection for NSCLC were consented. Surgical specimens were received directly from theatre and sampled fresh to produce two sets of core biopsies, two fine‐needle aspirates (FNAs) and two whole‐block tissue sections from each specimen. A matched biopsy, FNA, and whole‐block were placed into formalin or an alcohol‐based fixative (Cytolyt™) prior to PD‐L1 immunohistochemistry assessment. A total of 114 specimens from 57 patients were included. All whole‐block cases (100%), 92% of core biopsies, and 88% of FNAs were adequate for PD‐L1 expression analysis. Fixation had no significant impact on adequacy, but cytology specimens fixed in alcohol showed a significant reduction in PD‐L1 expression, with 25% of cases placed into different clinically relevant categories of PD‐L1 expression. PD‐L1 expression by immunochemistry is an exemplar of the challenges of utilising a heterogeneously expressed protein‐based predictive biomarker. Regardless of sampling technique, a good quality biopsy or FNA is likely to give a statistically representative PD‐L1 expression, although expression ranges close to clinically relevant cut‐offs of 1% and 50% remain a source of potential discordance.
- 25 August 2025
- Published by Wiley in The Journal of Pathology: Clinical Research
- Vol. 11 (5) , e70041
Open AccessAssessing PD‐L1 expression in non‐small cell lung carcinoma: a prospective study of matched fine‐needle aspirates, core biopsies, and resection specimens using alcohol and forming fixatives
PD‐L1 expression for the prediction of response to immune‐checkpoint blockade remains the most broadly utilised clinically validated biomarker in a range of tumour types. In this study, we aimed to assess, in a prospectively collected matched cohort, the impact of sampling technique and both formalin and alcohol fixation on PD‐L1 expression and heterogeneity in non‐small cell lung carcinoma (NSCLC). Patients undergoing surgical resection for NSCLC were consented. Surgical specimens were received directly from theatre and sampled fresh to produce two sets of core biopsies, two fine‐needle aspirates (FNAs) and two whole‐block tissue sections from each specimen. A matched biopsy, FNA, and whole‐block were placed into formalin or an alcohol‐based fixative (Cytolyt™) prior to PD‐L1 immunohistochemistry assessment. A total of 114 specimens from 57 patients were included. All whole‐block cases (100%), 92% of core biopsies, and 88% of FNAs were adequate for PD‐L1 expression analysis. Fixation had no significant impact on adequacy, but cytology specimens fixed in alcohol showed a significant reduction in PD‐L1 expression, with 25% of cases placed into different clinically relevant categories of PD‐L1 expression. PD‐L1 expression by immunochemistry is an exemplar of the challenges of utilising a heterogeneously expressed protein‐based predictive biomarker. Regardless of sampling technique, a good quality biopsy or FNA is likely to give a statistically representative PD‐L1 expression, although expression ranges close to clinically relevant cut‐offs of 1% and 50% remain a source of potential discordance.
- 30 May 2024
- Published by Wiley in Cytopathology
- Vol. 35 (5) , 648-653
Rapid molecular profiling utilising minimal quantities of endobronchial ultrasound‐guided aspirates for the detection of Epidermal Growth Factor Receptor, KRAS, ALK, ROS1, RET, NTRK and MET gene alterations from patients with non‐small‐cell lung carcinomas on the Biocartis Idylla™ platform
Objectives: Comprehensive molecular analysis for patients with non‐small‐cell lung carcinoma (NSCLC) is essential for managing modern targeted therapies. This study sought to establish the feasibility of utilising real‐time PCR to perform rapid and comprehensive profiling on minimal amounts of endobronchial ultrasound‐guided (EBUS) aspirates as a fast, tissue‐sparing route of predictive profiling.Methods: A volume of 500 μL of EBUS aspirate and fixative from patients with NSCLC was decanted, and 80 μL (KRAS mutations (37%), 5 EGFR mutations (8%) and 1 ROS fusion (2%) were identified. Average time from specimen receipt to molecular read‐out was 5 h.Conclusion: Real‐time PCR utilising the Idylla™ platform is rapid, utilises minimal amounts of tissue and provides accurate results. We propose this is a useful ancillary method to utilise alongside next‐generation sequencing (NGS) in cases of urgent clinical requirement or EBUS aspirates with inadequate quantities of tissue for NGS.
- 30 May 2024
- Published by Wiley in Cytopathology
- Vol. 35 (5) , 648-653
Rapid molecular profiling utilising minimal quantities of endobronchial ultrasound‐guided aspirates for the detection of Epidermal Growth Factor Receptor, KRAS, ALK, ROS1, RET, NTRK and MET gene alterations from patients with non‐small‐cell lung carcinomas on the Biocartis Idylla™ platform
Objectives: Comprehensive molecular analysis for patients with non‐small‐cell lung carcinoma (NSCLC) is essential for managing modern targeted therapies. This study sought to establish the feasibility of utilising real‐time PCR to perform rapid and comprehensive profiling on minimal amounts of endobronchial ultrasound‐guided (EBUS) aspirates as a fast, tissue‐sparing route of predictive profiling.Methods: A volume of 500 μL of EBUS aspirate and fixative from patients with NSCLC was decanted, and 80 μL (KRAS mutations (37%), 5 EGFR mutations (8%) and 1 ROS fusion (2%) were identified. Average time from specimen receipt to molecular read‐out was 5 h.Conclusion: Real‐time PCR utilising the Idylla™ platform is rapid, utilises minimal amounts of tissue and provides accurate results. We propose this is a useful ancillary method to utilise alongside next‐generation sequencing (NGS) in cases of urgent clinical requirement or EBUS aspirates with inadequate quantities of tissue for NGS.
- Open Access
- 6 December 2023
- Published by BMJ in Journal of Clinical Pathology
- Vol. 77 (2) , 140-144
Machine-learning-based image analysis algorithms improve interpathologist concordance when scoring PD-L1 expression in non-small-cell lung cancer
Programmed death ligand 1 (PD-L1) expression on tumour cells is the only predictive biomarker of response to immuno-modulatory therapy for patients with non-small-cell lung cancer (NSCLC). Accuracy of this biomarker is hampered by its challenging interpretation. Here we explore if the use of machine-learning derived image analysis tools can improve interpathologist concordance of assessing PD-L1 expression in NSCLC. Five pathologists who routinely score PD-L1 at a major regional referral hospital for thoracic surgery participated. 13 NSCLC small diagnostic biopsies were stained for PD-L1 (SP263 clone) and digitally scanned. Each pathologist independently scored each case with and without the Roche uPath PD-L1 (SP263) image analysis NSCLC algorithm with a wash-out interim period of 6 weeks. A consistent improvement in interpathologist concordance was seen when using the image analysis tool compared with scoring without: (Fleiss’ kappa 0.886 vs 0.613 (p<0.0001) and intraclass coefficient correlation 0.954 vs 0.837 (p<0.001)). Five cases (38%) were classified into clinically relevant different categories (negative/weak/strong) by multiple pathologists when not using the image analysis algorithm, whereas only two cases (15%) were classified differently when using the image analysis algorithm. The use of the image analysis algorithm improved the concordance of assessing PD-L1 expression between pathologists. Critically, there was a marked improvement in the placement of cases into more consistent clinical groupings. This small study is evidence that the use of image analysis tools may improve consistency in assessing tumours for PD-L1 expression and may therefore result in more consistent prediction to targeted treatment options.
- 6 December 2023
- Published by BMJ in Journal of Clinical Pathology
- Vol. 77 (2) , 140-144
Open AccessMachine-learning-based image analysis algorithms improve interpathologist concordance when scoring PD-L1 expression in non-small-cell lung cancer
Programmed death ligand 1 (PD-L1) expression on tumour cells is the only predictive biomarker of response to immuno-modulatory therapy for patients with non-small-cell lung cancer (NSCLC). Accuracy of this biomarker is hampered by its challenging interpretation. Here we explore if the use of machine-learning derived image analysis tools can improve interpathologist concordance of assessing PD-L1 expression in NSCLC. Five pathologists who routinely score PD-L1 at a major regional referral hospital for thoracic surgery participated. 13 NSCLC small diagnostic biopsies were stained for PD-L1 (SP263 clone) and digitally scanned. Each pathologist independently scored each case with and without the Roche uPath PD-L1 (SP263) image analysis NSCLC algorithm with a wash-out interim period of 6 weeks. A consistent improvement in interpathologist concordance was seen when using the image analysis tool compared with scoring without: (Fleiss’ kappa 0.886 vs 0.613 (p<0.0001) and intraclass coefficient correlation 0.954 vs 0.837 (p<0.001)). Five cases (38%) were classified into clinically relevant different categories (negative/weak/strong) by multiple pathologists when not using the image analysis algorithm, whereas only two cases (15%) were classified differently when using the image analysis algorithm. The use of the image analysis algorithm improved the concordance of assessing PD-L1 expression between pathologists. Critically, there was a marked improvement in the placement of cases into more consistent clinical groupings. This small study is evidence that the use of image analysis tools may improve consistency in assessing tumours for PD-L1 expression and may therefore result in more consistent prediction to targeted treatment options.
- 11 January 2023
- Published by Elsevier in Laboratory Investigation
- Vol. 36 (2) , 100052
Response to the Article by Sompuram et al
- 11 January 2023
- Published by Elsevier in Laboratory Investigation
- Vol. 36 (2) , 100052
Response to the Article by Sompuram et al
- Open Access
- 2 January 2020
- Published by Elsevier in Laboratory Investigation
- Vol. 100 (6) , 874-886
Accelerated instability testing reveals quantitative mass spectrometry overcomes specimen storage limitations associated with PD-L1 immunohistochemistry
- 2 January 2020
- Published by Elsevier in Laboratory Investigation
- Vol. 100 (6) , 874-886
Open AccessAccelerated instability testing reveals quantitative mass spectrometry overcomes specimen storage limitations associated with PD-L1 immunohistochemistry
- Open Access
- 1 August 2019
- Published by Elsevier in Lung Cancer
- Vol. 134, 79-84
Heterogeneity of PD-L1 expression in non-small cell lung cancer: Implications for specimen sampling in predicting treatment response
- 1 August 2019
- Published by Elsevier in Lung Cancer
- Vol. 134, 79-84
Open AccessHeterogeneity of PD-L1 expression in non-small cell lung cancer: Implications for specimen sampling in predicting treatment response
- 1 October 2018
- Published by Elsevier in Journal of Thoracic Oncology
- Vol. 13 (10) , S534-S535
P1.04-24 Digital Core Needle-Biopsy to Assess PD-L1 Expression in Non-Small Cell Lung Cancer: Optimal Sampling and Need for Re-Biopsy
- 1 October 2018
- Published by Elsevier in Journal of Thoracic Oncology
- Vol. 13 (10) , S534-S535
P1.04-24 Digital Core Needle-Biopsy to Assess PD-L1 Expression in Non-Small Cell Lung Cancer: Optimal Sampling and Need for Re-Biopsy