Geraldo Francisco Donega Zafalon
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Geraldo Francisco Donega Zafalon has a total of 101 co-authors. Here are the top co-authors by number of shared publications:
- Leandro Alves Neves
São Paulo State University (UNESP)
18 shared publications - Rogeria Cristiane Gratao de Souza
Sao Paulo State University
9 shared publications - Anderson Rici Amorim
Department of Computer Science and Statistics, Universidade Estadual Paulista (UNESP), Rua Cristóvão Colombo, 2265, Jardim Nazareth, São José do Rio Preto - SP, 15054-000, Brazil, --- Select a Country --
7 shared publications - Angelo Cesar Colombini
Department of Electrical Engineering, Fluminense Federal University (UFF), Passo da Pátria 156, São Domingos, Niterói 24210-240, RJ, Brazil
6 shared publications Carlos Roberto Valencio
6 shared publicationsCarlos Roberto Valêncio
Department of Computer Science and Statistics, Universidade Estadual Paulista (UNESP), Rua Cristóvão Colombo, 2265, Jardim Nazareth, São José do Rio Preto, SP 15054-000, Brazil
5 shared publications
Latest Publications
- Open Access
- 10 March 2026
- Published by MDPI AG in Technologies
- Vol. 14 (3) , 171
An Architectural Optimization Framework for Scalable Spatial Clustering in High-Redundancy Environments
Spatial Big Data mining is often hindered by high computational complexity and the intrinsic autocorrelation of georeferenced records. To address these challenges, this study proposes an architectural optimization framework for the CHSMST+ algorithm, designated as CHSMST+MR. Rather than introducing a brand-new clustering paradigm, the framework focuses on a Distributed Spatial Cardinality Reduction (DSCR) layer that aggregates redundant spatial records before the core iterative mining logic begins. By transforming raw records into a weighted key-value representation within the Apache Spark environment, the proposed approach significantly mitigates the shuffling bottleneck common in distributed systems. Experimental validation using high-density biological datasets demonstrates an average execution-time reduction of 51.36%, with performance gains reaching up to 79.96% in specific high-redundancy scenarios. The results, obtained through controlled local emulation, confirm that this architectural optimization provides a scalable, deterministic, and lossless solution for accelerating spatial clustering. This work contributes a methodological path for enhancing the performance of iterative spatial mining algorithms in environments characterized by massive data density and coordinate redundancy.
- 10 March 2026
- Published by MDPI AG in Technologies
- Vol. 14 (3) , 171
Open AccessAn Architectural Optimization Framework for Scalable Spatial Clustering in High-Redundancy Environments
Spatial Big Data mining is often hindered by high computational complexity and the intrinsic autocorrelation of georeferenced records. To address these challenges, this study proposes an architectural optimization framework for the CHSMST+ algorithm, designated as CHSMST+MR. Rather than introducing a brand-new clustering paradigm, the framework focuses on a Distributed Spatial Cardinality Reduction (DSCR) layer that aggregates redundant spatial records before the core iterative mining logic begins. By transforming raw records into a weighted key-value representation within the Apache Spark environment, the proposed approach significantly mitigates the shuffling bottleneck common in distributed systems. Experimental validation using high-density biological datasets demonstrates an average execution-time reduction of 51.36%, with performance gains reaching up to 79.96% in specific high-redundancy scenarios. The results, obtained through controlled local emulation, confirm that this architectural optimization provides a scalable, deterministic, and lossless solution for accelerating spatial clustering. This work contributes a methodological path for enhancing the performance of iterative spatial mining algorithms in environments characterized by massive data density and coordinate redundancy.
- 1 December 2023
- Published by Institute of Electrical and Electronics Engineers (IEEE)
- p. 19-26
Generation of New Bilingual Dictionaries Through Inference Techniques Supported by a Graph Oriented Database Management System
The popularization of the internet allowed the use of different technologies for storing and retrieving bilingual dictionaries. An example is the Resource Description Framework (RDF) datasets. The storage of bilingual dictionaries in this type of structure makes it possible to discover indirectly connected translations through inference. However, such datasets are not efficient in graph search operations, which are important actions for inference techniques in the discovery of translations. On the other hand, database management systems based on the graph model offer a collection of resources that facilitate the tasks that involve such operations. In this way, a group of bilingual dictionaries from an RDF dataset was adapted to a Graph Database Management System (GDMS) which made it possible to reduce and simplify the structures of these dictionaries. Subsequently, 2 translation inference techniques were implemented in which two new bilingual English-Portuguese dictionaries were automatically generated. Thus, such inference algorithms are efficient in generating new dictionaries through GDMS. The scientific contribution is the application of a new technology for data storage and retrieval in support of bilingual dictionaries, in which there are advantages together with inference techniques in the generation of bilingual dictionaries and not addressed by related papers in literature.
- 1 December 2023
- Published by Institute of Electrical and Electronics Engineers (IEEE)
- p. 19-26
Generation of New Bilingual Dictionaries Through Inference Techniques Supported by a Graph Oriented Database Management System
The popularization of the internet allowed the use of different technologies for storing and retrieving bilingual dictionaries. An example is the Resource Description Framework (RDF) datasets. The storage of bilingual dictionaries in this type of structure makes it possible to discover indirectly connected translations through inference. However, such datasets are not efficient in graph search operations, which are important actions for inference techniques in the discovery of translations. On the other hand, database management systems based on the graph model offer a collection of resources that facilitate the tasks that involve such operations. In this way, a group of bilingual dictionaries from an RDF dataset was adapted to a Graph Database Management System (GDMS) which made it possible to reduce and simplify the structures of these dictionaries. Subsequently, 2 translation inference techniques were implemented in which two new bilingual English-Portuguese dictionaries were automatically generated. Thus, such inference algorithms are efficient in generating new dictionaries through GDMS. The scientific contribution is the application of a new technology for data storage and retrieval in support of bilingual dictionaries, in which there are advantages together with inference techniques in the generation of bilingual dictionaries and not addressed by related papers in literature.
- Open Access
- 1 January 2023
- Published by INSTICC
- p. 134-141
Optimization of SNP Search Based on Masks Using Graphics Processing Unit
- 1 January 2023
- Published by INSTICC
- p. 134-141
Open AccessOptimization of SNP Search Based on Masks Using Graphics Processing Unit
- 1 October 2021
- Published by Elsevier in Computational Biology and Chemistry
- Vol. 94, 107563
Metaheuristics for multiple sequence alignment: A systematic review
- 1 October 2021
- Published by Elsevier in Computational Biology and Chemistry
- Vol. 94, 107563
Metaheuristics for multiple sequence alignment: A systematic review
- 9 November 2020
- Published by Springer Nature in Pattern Analysis and Applications
- Vol. 24 (2) , 483-496
Analysis of cancer in histological images: employing an approach based on genetic algorithm
- 9 November 2020
- Published by Springer Nature in Pattern Analysis and Applications
- Vol. 24 (2) , 483-496
Analysis of cancer in histological images: employing an approach based on genetic algorithm
- Open Access
- 1 November 2018
- Published by Science Publications in Journal of Computer Science
- Vol. 14 (11) , 1465-1474
Performance Improvement of SNP Search Using Multithread Programming
Pattern recognition is an important field in Bioinformatics and a well-known task is the search for Single Nucleotide Polymorphism (SNP). It is possible to search for a known SNP position and analyze it using patterns of DNA bases, called masks. Nonetheless, this process becomes computationally expensive as the amount of available genomic data increases. Thus, in this study, we have developed a parallelization scheme, based on multithread programming, to SNP analysis using masks. In our tests, we noticed that the proposed scheme improved the execution time in 98.05 times when compared with the sequential approach.
- 1 November 2018
- Published by Science Publications in Journal of Computer Science
- Vol. 14 (11) , 1465-1474
Open AccessPerformance Improvement of SNP Search Using Multithread Programming
Pattern recognition is an important field in Bioinformatics and a well-known task is the search for Single Nucleotide Polymorphism (SNP). It is possible to search for a known SNP position and analyze it using patterns of DNA bases, called masks. Nonetheless, this process becomes computationally expensive as the amount of available genomic data increases. Thus, in this study, we have developed a parallelization scheme, based on multithread programming, to SNP analysis using masks. In our tests, we noticed that the proposed scheme improved the execution time in 98.05 times when compared with the sequential approach.
- 1 August 2018
- Published by Elsevier in Computational Biology and Chemistry
- Vol. 75, 39-44
An approach for COFFEE objective function to global DNA multiple sequence alignment
- 1 August 2018
- Published by Elsevier in Computational Biology and Chemistry
- Vol. 75, 39-44
An approach for COFFEE objective function to global DNA multiple sequence alignment
- Open Access
- 19 July 2018
- Published by Science Publications in Journal of Computer Science
- Vol. 14 (7) , 1000-1028
Exploring Mesh Generation and Quality Enhancement with Open Source Codes
The finite element method is a very reliable and precise technique for solving partial differential equations in three-dimensional domains, with relevant applications in several areas. However, 3D simulations by FEM require computer programs for solid modeling and automatic mesh generation and there are few examples of open source codes available and dedicated to these tasks. Unfortunately, these open source codes are not usually conceived to operate together in an integrated fashion, showing distinct life cycles and different origins, which may result in contradictory specifications. In this study, a method is proposed to integrate solid modeling and automatic mesh generation with focus on open source codes and how the quality of FEM simulations can be improved by the improvement of the mesh. The method was structured in desired features for the solid construction and in integration strategies for an automatic mesh generation. The approach was tested in nontrivial domains and with known relevance for studies focused on computational electromagnetics. Meshes were generated with millions of tetrahedral elements and the results were compared to the quality values commonly discussed in literature focused on FEM. Complex geometries were meshed in a few seconds, with consistent values of aspect ratios (more than 90% of the tetrahedral elements were constructed with values at most 5) and dihedral angles (the values were bounded between 5.9 to 166.7°C, with a peak value around 90°C). Finally, in order to show the relation among highly refined meshes and quality criteria which can be explored by proposed method, the Laplace's equation was simulated by FEM in order to analyze the equipotential lines of a parallel-plate capacitor. The results show how the quality of a simulation can be improved, especially concerning the increasing number of tetrahedra in the mesh with proper aspect ratio.
- 19 July 2018
- Published by Science Publications in Journal of Computer Science
- Vol. 14 (7) , 1000-1028
Open AccessExploring Mesh Generation and Quality Enhancement with Open Source Codes
The finite element method is a very reliable and precise technique for solving partial differential equations in three-dimensional domains, with relevant applications in several areas. However, 3D simulations by FEM require computer programs for solid modeling and automatic mesh generation and there are few examples of open source codes available and dedicated to these tasks. Unfortunately, these open source codes are not usually conceived to operate together in an integrated fashion, showing distinct life cycles and different origins, which may result in contradictory specifications. In this study, a method is proposed to integrate solid modeling and automatic mesh generation with focus on open source codes and how the quality of FEM simulations can be improved by the improvement of the mesh. The method was structured in desired features for the solid construction and in integration strategies for an automatic mesh generation. The approach was tested in nontrivial domains and with known relevance for studies focused on computational electromagnetics. Meshes were generated with millions of tetrahedral elements and the results were compared to the quality values commonly discussed in literature focused on FEM. Complex geometries were meshed in a few seconds, with consistent values of aspect ratios (more than 90% of the tetrahedral elements were constructed with values at most 5) and dihedral angles (the values were bounded between 5.9 to 166.7°C, with a peak value around 90°C). Finally, in order to show the relation among highly refined meshes and quality criteria which can be explored by proposed method, the Laplace's equation was simulated by FEM in order to analyze the equipotential lines of a parallel-plate capacitor. The results show how the quality of a simulation can be improved, especially concerning the increasing number of tetrahedra in the mesh with proper aspect ratio.
- 1 December 2017
- Published by Institute of Electrical and Electronics Engineers (IEEE)
- p. 127-134
An Efficient Parallel Optimization for Co-Authorship Network Analysis
Co-authorship analysis in science and technology partnerships provides a vision of cooperation patterns between individuals and organizations and is still widely used to understand and assess scientific collaboration patterns. This analysis is conducted by means of bibliometry, which is the quantitative study of scientific production. However, with the evolution of database management systems, there was a significant increase in the volume of stored data, which could difficult the analysis. In this context, the developed work presents an efficient parallel optimization of bibliometric information, in order to allow this scientific analysis in a Big Data environment. Our results show that the time taken to calculate the transitivity value using the sequential approach grows 4.08 times faster than the parallel proposed approach when the number of nodes tends to infinity; the time taken to calculate the average distance and diameter values using the sequential approach grows 5.27 times faster than the parallel proposed approach when the number of nodes tends to infinity. Also, the results found present good values of speed up and efficiency.
- 1 December 2017
- Published by Institute of Electrical and Electronics Engineers (IEEE)
- p. 127-134
An Efficient Parallel Optimization for Co-Authorship Network Analysis
Co-authorship analysis in science and technology partnerships provides a vision of cooperation patterns between individuals and organizations and is still widely used to understand and assess scientific collaboration patterns. This analysis is conducted by means of bibliometry, which is the quantitative study of scientific production. However, with the evolution of database management systems, there was a significant increase in the volume of stored data, which could difficult the analysis. In this context, the developed work presents an efficient parallel optimization of bibliometric information, in order to allow this scientific analysis in a Big Data environment. Our results show that the time taken to calculate the transitivity value using the sequential approach grows 4.08 times faster than the parallel proposed approach when the number of nodes tends to infinity; the time taken to calculate the average distance and diameter values using the sequential approach grows 5.27 times faster than the parallel proposed approach when the number of nodes tends to infinity. Also, the results found present good values of speed up and efficiency.
- Open Access
- 1 January 2017
- Published by INSTICC
- p. 370-378
Project Scope Management: A Strategy Oriented to the Requirements Engineering
- 1 January 2017
- Published by INSTICC
- p. 370-378
Open AccessProject Scope Management: A Strategy Oriented to the Requirements Engineering