Clara Palestrini
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Research Interests
Clara Palestrini has a total of 114 co-authors. Here are the top co-authors by number of shared publications:
- Simona Cannas
Department of Veterinary Medicine and Animal Science, University of Milan, 26900 Lodi, Italy
29 shared publications - Michela Minero
Dipartimento di Medicina Veterinaria e Scienze Animali, Università degli Studi di Milano, 26900 Lodi, Italy
16 shared publications Diane Frank
Faculté de Médecine Vétérinaire, Département de Sciences Cliniques, Université de Montréal, No. 3200, rue Sicotte, Saint-Hyacinthe, QC, Canada J2S 2M2
9 shared publications- Silvia Mazzola
Department of Veterinary Medicine and Animal Sciences, Università degli Studi di Milano, 26900 Lodi, Italy
8 shared publications - Greta Veronica Berteselli
Department of Veterinary Medicine and Animal Science, University of Milan, 26900 Lodi, Italy
6 shared publications - Emanuela Dalla Costa
Department of Veterinary Medicine and Animal Science, University of Milan, 26900 Lodi, Italy
5 shared publications
Latest Publications
- Open Access
Coprophagy in Healthy Dogs Does Not Alter Fecal Core Microbiota or Increase Carriage of Enteropathogens
Coprophagy is a common behavior in domestic dogs, yet its effects on the intestinal microbiota and asymptomatic carriage of enteropathogens remain unclear. This study aimed to determine whether healthy coprophagic dogs differ from non-coprophagic dogs in fecal microbiota composition or prevalence of asymptomatic enteropathogen carriage. Forty-four clinically healthy dogs were prospectively enrolled, including 23 coprophagic and 21 non-coprophagic animals as reported by their owners. Ages spanned from 6 to 119 months old, including 19 mixed-breed dogs and 25 purebred dogs, and diet was not controlled for. Fecal samples were analyzed using quantitative PCR to determine the canine dysbiosis index, quantify core bacterial taxa, and detect selected enteropathogens, including Clostridium perfringens, Clostridioides difficile, Campylobacter jejuni, Salmonella spp., canine parvovirus, and toxin-associated genes. Demographic and microbiological data were compared between groups, with correction for multiple testing. No significant differences were observed between coprophagic and non-coprophagic dogs in dysbiosis index (q = 1), abundance of the core bacterial taxa evaluated (q = 0.17–1), or detection of enteropathogens (q = 0.734–1) after adjustment for multiple comparisons. Enteropathogens were absent or detected infrequently in both groups. These findings indicate that coprophagy in otherwise healthy dogs is not associated with measurable alterations in dysbiosis index, core fecal microbiota, or increased enteropathogen carriage.
Open AccessCoprophagy in Healthy Dogs Does Not Alter Fecal Core Microbiota or Increase Carriage of Enteropathogens
Coprophagy is a common behavior in domestic dogs, yet its effects on the intestinal microbiota and asymptomatic carriage of enteropathogens remain unclear. This study aimed to determine whether healthy coprophagic dogs differ from non-coprophagic dogs in fecal microbiota composition or prevalence of asymptomatic enteropathogen carriage. Forty-four clinically healthy dogs were prospectively enrolled, including 23 coprophagic and 21 non-coprophagic animals as reported by their owners. Ages spanned from 6 to 119 months old, including 19 mixed-breed dogs and 25 purebred dogs, and diet was not controlled for. Fecal samples were analyzed using quantitative PCR to determine the canine dysbiosis index, quantify core bacterial taxa, and detect selected enteropathogens, including Clostridium perfringens, Clostridioides difficile, Campylobacter jejuni, Salmonella spp., canine parvovirus, and toxin-associated genes. Demographic and microbiological data were compared between groups, with correction for multiple testing. No significant differences were observed between coprophagic and non-coprophagic dogs in dysbiosis index (q = 1), abundance of the core bacterial taxa evaluated (q = 0.17–1), or detection of enteropathogens (q = 0.734–1) after adjustment for multiple comparisons. Enteropathogens were absent or detected infrequently in both groups. These findings indicate that coprophagy in otherwise healthy dogs is not associated with measurable alterations in dysbiosis index, core fecal microbiota, or increased enteropathogen carriage.
- Open Access
“Beyond the Sad Eyes”: A Pilot Study on Behavioural and Physiological Indicators in Shelter Dogs Exhibiting Depression-like Behaviour
Shelter dogs may experience long-term environmental and social stressors that can affect their behaviour and welfare. Some individuals show reduced activity, low responsiveness to environmental stimuli, and limited interaction with their surroundings. This pilot study investigated behavioural patterns and allopregnanolone concentrations in shelter dogs exhibiting these behavioural characteristics. Ten shelter dogs were enrolled and divided into two groups: five dogs showing depression-like patterns and five matched control dogs. Each dog wore a three-axis accelerometer for 30 days to quantify activity levels. Behavioural observations were conducted using video recordings, and hair samples were collected at baseline and after 30 days to assess allopregnanolone concentrations as a potential stress marker. Dogs in the case group showed significantly longer resting time than controls (p ≤ 0.05), indicating reduced activity levels. Trends toward lower levels of exploratory and social behaviours were also observed, although the differences were not statistically significant. Allopregnanolone concentrations ranged from 0.6 to 4.6 pg/mg and showed considerable inter-individual variability, with no significant differences detected between groups. These findings provide preliminary evidence of behavioural and physiological alterations in shelter dogs displaying depression-like patterns. However, further studies with larger populations are needed to validate these findings and improve welfare assessment in shelter environments.
Open Access“Beyond the Sad Eyes”: A Pilot Study on Behavioural and Physiological Indicators in Shelter Dogs Exhibiting Depression-like Behaviour
Shelter dogs may experience long-term environmental and social stressors that can affect their behaviour and welfare. Some individuals show reduced activity, low responsiveness to environmental stimuli, and limited interaction with their surroundings. This pilot study investigated behavioural patterns and allopregnanolone concentrations in shelter dogs exhibiting these behavioural characteristics. Ten shelter dogs were enrolled and divided into two groups: five dogs showing depression-like patterns and five matched control dogs. Each dog wore a three-axis accelerometer for 30 days to quantify activity levels. Behavioural observations were conducted using video recordings, and hair samples were collected at baseline and after 30 days to assess allopregnanolone concentrations as a potential stress marker. Dogs in the case group showed significantly longer resting time than controls (p ≤ 0.05), indicating reduced activity levels. Trends toward lower levels of exploratory and social behaviours were also observed, although the differences were not statistically significant. Allopregnanolone concentrations ranged from 0.6 to 4.6 pg/mg and showed considerable inter-individual variability, with no significant differences detected between groups. These findings provide preliminary evidence of behavioural and physiological alterations in shelter dogs displaying depression-like patterns. However, further studies with larger populations are needed to validate these findings and improve welfare assessment in shelter environments.
- Open Access
- 16 June 2026
- Published by Elsevier in Journal of Veterinary Behavior
- Vol. 86, 82-87
Behavioral features of dogs adopted in northern-central Italy from south
- 16 June 2026
- Published by Elsevier in Journal of Veterinary Behavior
- Vol. 86, 82-87
Open AccessBehavioral features of dogs adopted in northern-central Italy from south
- Open Access
Italians Can Resist Everything, Except Flat-Faced Dogs!
Brachycephalic dogs remain highly popular despite the well-documented health problems associated with their conformation. The aim of this study was to investigate differences in the bonding between humans and dogs, behavioral characteristics, awareness of clinical breed-related ailments, and purchasing intentions among Italian brachycephalic dog owners (BDOs) and non-brachycephalic dog owners (NBDOs). A questionnaire, including the DORS and C-BARQ scales, was administered to 320 BDOs and 408 NBDOs. Despite the occurrence of breed-related disorders, 81% of BDOs rated their dog’s health status as good to excellent. Most BDOs were aware of the prevalence of these disorders in the broader brachycephalic dog population. Character and appearance were the main motivations for choosing these breeds. Owners’ satisfaction with specific aspects of ownership, such as veterinary costs and behavior, generally met expectations. Mean scores of perceived emotional closeness (PEC) and dog–owner interaction (DOI) were significantly higher among BDOs compared to NBDOs, while the perceived cost (PC) mean score was higher among NBDOs. The C-BARQ scores for trainability, excitability, and separation-related behaviors were significantly higher in BDOs than in NBDOs. Despite the growing awareness of health issues, the popularity of brachycephalic breeds persists. Scientific evidence may support a revision of brachycephalic breed standards, prioritizing animal welfare while preserving desirable aesthetic traits, promoting more ethical breeding.
Open AccessItalians Can Resist Everything, Except Flat-Faced Dogs!
Brachycephalic dogs remain highly popular despite the well-documented health problems associated with their conformation. The aim of this study was to investigate differences in the bonding between humans and dogs, behavioral characteristics, awareness of clinical breed-related ailments, and purchasing intentions among Italian brachycephalic dog owners (BDOs) and non-brachycephalic dog owners (NBDOs). A questionnaire, including the DORS and C-BARQ scales, was administered to 320 BDOs and 408 NBDOs. Despite the occurrence of breed-related disorders, 81% of BDOs rated their dog’s health status as good to excellent. Most BDOs were aware of the prevalence of these disorders in the broader brachycephalic dog population. Character and appearance were the main motivations for choosing these breeds. Owners’ satisfaction with specific aspects of ownership, such as veterinary costs and behavior, generally met expectations. Mean scores of perceived emotional closeness (PEC) and dog–owner interaction (DOI) were significantly higher among BDOs compared to NBDOs, while the perceived cost (PC) mean score was higher among NBDOs. The C-BARQ scores for trainability, excitability, and separation-related behaviors were significantly higher in BDOs than in NBDOs. Despite the growing awareness of health issues, the popularity of brachycephalic breeds persists. Scientific evidence may support a revision of brachycephalic breed standards, prioritizing animal welfare while preserving desirable aesthetic traits, promoting more ethical breeding.
- Open Access
Pregabalin Alleviates Anxiety and Fear in Cats during Transportation and Veterinary Visits—A Clinical Field Study
Cats frequently suffer from anxiety related to travel and veterinary visits. One sequela is avoidance of veterinary visits and lack of adequate veterinary care. The objective of this study was to test clinical efficacy and safety of a novel formulation of a pregabalin 50 mg/mL oral solution for alleviation of anxiety and fear in cats during transport and veterinary visits. A total of 209 client-owned cats were given either a flavored pregabalin oral solution at the dosage of 5 mg/kg (n = 108) or an identical placebo (n = 101) approximately 90 min before placing them into the carrier and transporting them in a car for at least 20 min to a veterinary clinic. The treatment effect using a 5-point numerical rating scale was evaluated during transportation by the owner and during clinical examination by the veterinarian, both blinded to the treatment. In addition, to verify the owner assessment, an external expert blinded to the treatment and owner assessment evaluated the transportation video recordings using the same rating scale as the owner. Pregabalin 5 mg/kg statistically significantly decreased both travel- (p < 0.01) and veterinary-visit- (p < 0.01) related anxiety compared to the placebo. The external expert’s evaluation was in agreement with the owners’ assessment confirming the treatment effect during transportation (p < 0.01). Treatment was well tolerated with only a few cats showing transient slight incoordination and tiredness. The flavored oral solution formulation with a small dosing volume of 0.1 mL/kg was found by the owners to be user-friendly and was well-accepted by the cats. This study demonstrated that a single oral dosage of the novel pregabalin oral solution alleviates anxiety and fear related to transportation and veterinary visits in cats, thus providing practical aid for both owners and veterinarians to enable cat-friendly handling and improving the welfare of cats in situations they often perceive as very stressful.
Open AccessPregabalin Alleviates Anxiety and Fear in Cats during Transportation and Veterinary Visits—A Clinical Field Study
Cats frequently suffer from anxiety related to travel and veterinary visits. One sequela is avoidance of veterinary visits and lack of adequate veterinary care. The objective of this study was to test clinical efficacy and safety of a novel formulation of a pregabalin 50 mg/mL oral solution for alleviation of anxiety and fear in cats during transport and veterinary visits. A total of 209 client-owned cats were given either a flavored pregabalin oral solution at the dosage of 5 mg/kg (n = 108) or an identical placebo (n = 101) approximately 90 min before placing them into the carrier and transporting them in a car for at least 20 min to a veterinary clinic. The treatment effect using a 5-point numerical rating scale was evaluated during transportation by the owner and during clinical examination by the veterinarian, both blinded to the treatment. In addition, to verify the owner assessment, an external expert blinded to the treatment and owner assessment evaluated the transportation video recordings using the same rating scale as the owner. Pregabalin 5 mg/kg statistically significantly decreased both travel- (p < 0.01) and veterinary-visit- (p < 0.01) related anxiety compared to the placebo. The external expert’s evaluation was in agreement with the owners’ assessment confirming the treatment effect during transportation (p < 0.01). Treatment was well tolerated with only a few cats showing transient slight incoordination and tiredness. The flavored oral solution formulation with a small dosing volume of 0.1 mL/kg was found by the owners to be user-friendly and was well-accepted by the cats. This study demonstrated that a single oral dosage of the novel pregabalin oral solution alleviates anxiety and fear related to transportation and veterinary visits in cats, thus providing practical aid for both owners and veterinarians to enable cat-friendly handling and improving the welfare of cats in situations they often perceive as very stressful.
- Open Access
Flat-Faced or Non-Flat-Faced Cats? That Is the Question
Persian and exotic shorthair cats are the most-popular brachycephalic breeds worldwide. This study aimed to explore differences in human-cat bonding, behavioural traits, perception of clinical breed-related problems, and the motivation for purchasing between brachycephalic cat owners (BCOs) and non-brachycephalic cat owners (NBCOs). Using an online questionnaire, human-cat bonding and cats’ behavioural traits were explored using the CORS and Fe-BARQ scales, respectively. Breed-related problems and motivations for purchasing were explored only in BCOs. There were 278 BCOs and 250 NBCOs who completed the survey. Respiratory diseases resulted in being the main health problem of these breeds. Most BCOs were not aware of the incidence of these disorders in brachycephalic cats. Character and appearance were the main motivations for purchasing these breeds. Perceived emotional closeness (EC), cat-owner interaction (COI), and perceived cost (PC) mean scores were significantly higher in BCOs. Playfulness and affection-/attention-seeking scores were significantly higher in NBCOs. BCOs reported a significantly higher score for separation-related behaviours. The higher scores in separation-anxiety-related behaviours and in the EC and COI scales could be related mainly to the high level of care these breeds require. The motivation for acquiring brachycephalic breeds for good companionship seems in contrast with the lower scores obtained from BCOs for playfulness and affection-/attention-seeking.
Open AccessFlat-Faced or Non-Flat-Faced Cats? That Is the Question
Persian and exotic shorthair cats are the most-popular brachycephalic breeds worldwide. This study aimed to explore differences in human-cat bonding, behavioural traits, perception of clinical breed-related problems, and the motivation for purchasing between brachycephalic cat owners (BCOs) and non-brachycephalic cat owners (NBCOs). Using an online questionnaire, human-cat bonding and cats’ behavioural traits were explored using the CORS and Fe-BARQ scales, respectively. Breed-related problems and motivations for purchasing were explored only in BCOs. There were 278 BCOs and 250 NBCOs who completed the survey. Respiratory diseases resulted in being the main health problem of these breeds. Most BCOs were not aware of the incidence of these disorders in brachycephalic cats. Character and appearance were the main motivations for purchasing these breeds. Perceived emotional closeness (EC), cat-owner interaction (COI), and perceived cost (PC) mean scores were significantly higher in BCOs. Playfulness and affection-/attention-seeking scores were significantly higher in NBCOs. BCOs reported a significantly higher score for separation-related behaviours. The higher scores in separation-anxiety-related behaviours and in the EC and COI scales could be related mainly to the high level of care these breeds require. The motivation for acquiring brachycephalic breeds for good companionship seems in contrast with the lower scores obtained from BCOs for playfulness and affection-/attention-seeking.
- Open Access
- 2 September 2022
- Published by Frontiers Media SA in Frontiers in Veterinary Science
- Vol. 9, 973574
Do intense weather events influence dogs' and cats' behavior? Analysis of owner reported data in Italy
Climate change is a threat to global health and can affect both veterinary and human health. Intense weather events, including sudden and violent thunderstorms or periods of extreme heat, are predicted to rise in frequency and severity and this could lead owners to significantly change their habits and schedules based on the weather, could modify human management and could aggravate pre-existing behavioral problems in pets. The aims of the present study were to identify and quantify possible weather events impact on management, behavior, and behavioral problems of Italian dogs and cats, based on previous owners' experiences with their animals. Two questionnaires were prepared, one for dogs and one for cats, investigating owners' perceptions of the impact of weather events on their pets' behavior. A number of 392 dogs and 426 cats' owners answered the questionnaire. Our study showed that many behaviors in both species were equally modified by environmental temperature. Play and activity increased with cold weather and decreased with heat, and sleep increased with drops in temperature and with hot weather. In particular, the increase in activity in correspondence with the thermic drop was more significant in males, while the increase in playing behavior was statistically greater in the Sheepdogs and Cattle dogs –group1. Weather events did not affect aggressive and house soiling behaviors in both dogs and cats, but weather events, including wild thunderstorms, torrential rains influenced the pets' behavior. Understanding how pets modify their behaviors based on a different owners' schedule and to weather events can help to refine prevention strategies through societal changes and owner education.
- 2 September 2022
- Published by Frontiers Media SA in Frontiers in Veterinary Science
- Vol. 9, 973574
Open AccessDo intense weather events influence dogs' and cats' behavior? Analysis of owner reported data in Italy
Climate change is a threat to global health and can affect both veterinary and human health. Intense weather events, including sudden and violent thunderstorms or periods of extreme heat, are predicted to rise in frequency and severity and this could lead owners to significantly change their habits and schedules based on the weather, could modify human management and could aggravate pre-existing behavioral problems in pets. The aims of the present study were to identify and quantify possible weather events impact on management, behavior, and behavioral problems of Italian dogs and cats, based on previous owners' experiences with their animals. Two questionnaires were prepared, one for dogs and one for cats, investigating owners' perceptions of the impact of weather events on their pets' behavior. A number of 392 dogs and 426 cats' owners answered the questionnaire. Our study showed that many behaviors in both species were equally modified by environmental temperature. Play and activity increased with cold weather and decreased with heat, and sleep increased with drops in temperature and with hot weather. In particular, the increase in activity in correspondence with the thermic drop was more significant in males, while the increase in playing behavior was statistically greater in the Sheepdogs and Cattle dogs –group1. Weather events did not affect aggressive and house soiling behaviors in both dogs and cats, but weather events, including wild thunderstorms, torrential rains influenced the pets' behavior. Understanding how pets modify their behaviors based on a different owners' schedule and to weather events can help to refine prevention strategies through societal changes and owner education.
- Open Access
Do You Think I Am Living Well? A Four-Season Hair Cortisol Analysis on Leisure Horses in Different Housing and Management Conditions
The satisfaction of leisure horses’ behavioral needs has begun to be considered a priority, linked to the awareness that horses kept in single boxes may be deprived of social contact and the possibility to perform natural behaviors. Several factors may influence horses’ quality of life also in the paddock, and there are very few data on the effects of those variables on leisure horses’ chronic stress, measurable in terms of activation of the hypothalamic–pituitary–adrenocortical axis. Therefore, managerial choices faced by owners and stables managers are only based on experience, common sense, and anecdotal beliefs. This study assessed and compared the chronic stress levels in leisure horses hosted in structures in the same geographic and climatic area with different daily routines to verify which management strategy could be the one that better contributes to achieving the welfare of horses. Forty-seven horses were divided into three groups homogeneous in terms of sex and age: Mixed management group (n = 12), Paddock group (n = 19), and Natural management group (n = 16). The hair cortisol concentration, a reliable marker of long-term stress, was analyzed in all the horses the same day at four time points of the year. In addition to management strategies, the influences of other variables (sex, age, coat color, and season) were evaluated. Independently from the management strategies, significantly higher hair cortisol values were detected in the autumn and summer, as well as in individuals older than 15 years. No significant differences were highlighted between the sexes or the coat colors. The comparison of the different management strategies showed that, in the summer, autumn, and winter, the hair cortisol levels were significantly lower in the Mixed management group horses than the Paddock group, highlighting that those subjects had better homeostasis. The Natural management group horses’ hair cortisol levels were intermediate between the other two groups of horses in all the seasons. Spending the night in the stables would seem to positively impact the well-being of the horses. These findings, if confirmed by further studies, may be helpful in enhancing horse welfare and assisting in managerial choice decision-making.
Open AccessDo You Think I Am Living Well? A Four-Season Hair Cortisol Analysis on Leisure Horses in Different Housing and Management Conditions
The satisfaction of leisure horses’ behavioral needs has begun to be considered a priority, linked to the awareness that horses kept in single boxes may be deprived of social contact and the possibility to perform natural behaviors. Several factors may influence horses’ quality of life also in the paddock, and there are very few data on the effects of those variables on leisure horses’ chronic stress, measurable in terms of activation of the hypothalamic–pituitary–adrenocortical axis. Therefore, managerial choices faced by owners and stables managers are only based on experience, common sense, and anecdotal beliefs. This study assessed and compared the chronic stress levels in leisure horses hosted in structures in the same geographic and climatic area with different daily routines to verify which management strategy could be the one that better contributes to achieving the welfare of horses. Forty-seven horses were divided into three groups homogeneous in terms of sex and age: Mixed management group (n = 12), Paddock group (n = 19), and Natural management group (n = 16). The hair cortisol concentration, a reliable marker of long-term stress, was analyzed in all the horses the same day at four time points of the year. In addition to management strategies, the influences of other variables (sex, age, coat color, and season) were evaluated. Independently from the management strategies, significantly higher hair cortisol values were detected in the autumn and summer, as well as in individuals older than 15 years. No significant differences were highlighted between the sexes or the coat colors. The comparison of the different management strategies showed that, in the summer, autumn, and winter, the hair cortisol levels were significantly lower in the Mixed management group horses than the Paddock group, highlighting that those subjects had better homeostasis. The Natural management group horses’ hair cortisol levels were intermediate between the other two groups of horses in all the seasons. Spending the night in the stables would seem to positively impact the well-being of the horses. These findings, if confirmed by further studies, may be helpful in enhancing horse welfare and assisting in managerial choice decision-making.
- Open Access
Influence of Gonadectomy on Canine Behavior
Due to the lack of unequivocal scientific evidence, gonadectomy’s effects on dogs’ behavior are still debated. Since veterinarians differ in their opinion, there may be considerable diversity in the advice received by owners. This study aimed to evaluate the effects of gonadectomy on dog behavior across time. Ninety-six dog owners (48 control dogs and 48 experimental dogs) were interviewed twice (T0 and T1, nine months later) to obtain information about their dog’s behavior. No change was found in the eating behavior or weight of dogs of both groups. Compared to T0, at T1, experimental dogs were reported to show less mounting behavior, pull on the leash, and roaming behaviors. Marking behavior did not vary across time for both groups of dogs. A tendency to reduce owner-directed aggression was observed at T1 for experimental male dogs, while no change was observed for male controls. The literature reports conflicting information about the effect of gonadectomy on behavior, suggesting that further studies about this topic should be undertaken.
Open AccessInfluence of Gonadectomy on Canine Behavior
Due to the lack of unequivocal scientific evidence, gonadectomy’s effects on dogs’ behavior are still debated. Since veterinarians differ in their opinion, there may be considerable diversity in the advice received by owners. This study aimed to evaluate the effects of gonadectomy on dog behavior across time. Ninety-six dog owners (48 control dogs and 48 experimental dogs) were interviewed twice (T0 and T1, nine months later) to obtain information about their dog’s behavior. No change was found in the eating behavior or weight of dogs of both groups. Compared to T0, at T1, experimental dogs were reported to show less mounting behavior, pull on the leash, and roaming behaviors. Marking behavior did not vary across time for both groups of dogs. A tendency to reduce owner-directed aggression was observed at T1 for experimental male dogs, while no change was observed for male controls. The literature reports conflicting information about the effect of gonadectomy on behavior, suggesting that further studies about this topic should be undertaken.
- Open Access
Analysis of Hindgut Microbiome of Sheep and Effect of Different Husbandry Conditions
The microbiome is now seen as an important resource to understand animal health and welfare in many species. However, there are few studies aiming at identifying the association between fecal microbiome composition and husbandry conditions in sheep. A wide range of stressors associated with management and housing of animals increases the hypothalamic–pituitary axis activity, with growing evidence that the microbiome composition can be modified. Therefore, the purpose of the present study was to describe the core microbiome in sheep, characterized using 16S rRNA gene sequencing, and to explore whether exposure to stressful husbandry conditions changed sheep hindgut microbiome composition. Sheep (n = 10) were divided in two groups: isolated group (individually separated for 3 h/day) and control group (housed in the home pen for the entire trial period). Sheep core microbiome was dominated by Firmicutes (43.6%), Bacteroidetes (30.38%), Proteobacteria (10.14%), and Verrucomicrobia (7.55%). Comparative results revealed few operational taxonomic units (OTUs) with significantly different relative abundance between groups. Chao1, abundance-based coverage estimator (ACE), and Fisher’s alpha indices did not show differences between groups. OTU-based Bray–Curtis distances between groups were not significant (p-value = 0.07). In conclusion, these results describing the core microbiome of sheep do not suggest a strong effect of stressful husbandry conditions on microbial composition.
Open AccessAnalysis of Hindgut Microbiome of Sheep and Effect of Different Husbandry Conditions
The microbiome is now seen as an important resource to understand animal health and welfare in many species. However, there are few studies aiming at identifying the association between fecal microbiome composition and husbandry conditions in sheep. A wide range of stressors associated with management and housing of animals increases the hypothalamic–pituitary axis activity, with growing evidence that the microbiome composition can be modified. Therefore, the purpose of the present study was to describe the core microbiome in sheep, characterized using 16S rRNA gene sequencing, and to explore whether exposure to stressful husbandry conditions changed sheep hindgut microbiome composition. Sheep (n = 10) were divided in two groups: isolated group (individually separated for 3 h/day) and control group (housed in the home pen for the entire trial period). Sheep core microbiome was dominated by Firmicutes (43.6%), Bacteroidetes (30.38%), Proteobacteria (10.14%), and Verrucomicrobia (7.55%). Comparative results revealed few operational taxonomic units (OTUs) with significantly different relative abundance between groups. Chao1, abundance-based coverage estimator (ACE), and Fisher’s alpha indices did not show differences between groups. OTU-based Bray–Curtis distances between groups were not significant (p-value = 0.07). In conclusion, these results describing the core microbiome of sheep do not suggest a strong effect of stressful husbandry conditions on microbial composition.