Jonathan A. Jones
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Research Interests
Jonathan A. Jones has a total of 216 co-authors. Here are the top co-authors by number of shared publications:
- Peter J. Hore
Department of Chemistry, University of Oxford, Physical & Theoretical Chemistry Laboratory, Oxford OX1 3QZ, United Kingdom
12 shared publications - Muhammad Sabieh Anwar
Department of Physics, Syed Babar Ali School of Science and Engineering, Lahore University of Management Sciences (LUMS), Opposite Sector U, D.H.A. Lahore 54792, Pakistan
10 shared publications Christopher M. Dobson
9 shared publicationsD. Blazina
Department of Chemistry, University of York, Heslington, York YO10 5DD, United Kingdom
7 shared publicationsM. Mosca
Department of Combinatorics and Optimization University of Waterloo N2L 3G1 Waterloo Ontario Canada
7 shared publicationsDieter Jaksch
University of Oxford
6 shared publications
Latest Publications
- Open Access
- 12 June 2026
- Published by Elsevier in Journal of Magnetic Resonance
- Vol. 390, 108095
Multi-spin control from one-spin pulses
- 12 June 2026
- Published by Elsevier in Journal of Magnetic Resonance
- Vol. 390, 108095
Open AccessMulti-spin control from one-spin pulses
- Open Access
- 7 August 2025
- Published by Springer Nature in Nature Communications
- Vol. 16 (1) , 1-15
Seedless: on-the-fly pulse calculation for NMR experiments
NMR experiments require sequences of radio frequency (RF) pulses to manipulate nuclear spins. Signal is lost due to non-uniform excitation of nuclear spins resonating at different energies (chemical shifts) and inhomogeneity in the RF unavoidably generated by hardware over the sample volume. To overcome this, we present Seedless, a tool to calculate NMR pulses that compensate for these effects to enhance control of magnetisation and boost signal. As calculations take only a few seconds using an optimised GRadient Ascent Pulse Engineering (GRAPE) implementation, this now allows pulses to be generated in a few seconds, allowing them to be optimised for individual samples and spectrometers (“on-the-fly”). Each calculated pulse requires bands of chemical shift to be identified, over which one of 4 transforms will be performed, selected from a set that covers all commonly used applications. Using imaging experiments, we demonstrate our pulses effectively both increase the size of the coil volume and signal-to-noise in all experiments. We illustrate the approach by showing sensitivity gains in 1, 2 and 3D applications suitable for chemical and biological NMR. Seedless provides a means to enhance sensitivity in all pulse sequences in a manner that can be tailored to different samples and hardware being used.
- 7 August 2025
- Published by Springer Nature in Nature Communications
- Vol. 16 (1) , 1-15
Open AccessSeedless: on-the-fly pulse calculation for NMR experiments
NMR experiments require sequences of radio frequency (RF) pulses to manipulate nuclear spins. Signal is lost due to non-uniform excitation of nuclear spins resonating at different energies (chemical shifts) and inhomogeneity in the RF unavoidably generated by hardware over the sample volume. To overcome this, we present Seedless, a tool to calculate NMR pulses that compensate for these effects to enhance control of magnetisation and boost signal. As calculations take only a few seconds using an optimised GRadient Ascent Pulse Engineering (GRAPE) implementation, this now allows pulses to be generated in a few seconds, allowing them to be optimised for individual samples and spectrometers (“on-the-fly”). Each calculated pulse requires bands of chemical shift to be identified, over which one of 4 transforms will be performed, selected from a set that covers all commonly used applications. Using imaging experiments, we demonstrate our pulses effectively both increase the size of the coil volume and signal-to-noise in all experiments. We illustrate the approach by showing sensitivity gains in 1, 2 and 3D applications suitable for chemical and biological NMR. Seedless provides a means to enhance sensitivity in all pulse sequences in a manner that can be tailored to different samples and hardware being used.
- Open Access
Seedless: On-the-fly pulse calculation for NMR experiments
All NMR experiments require sequences of RF ‘pulses’ to manipulate nuclear spins. Signal is lost due to non-uniform excitation of nuclear spins resonating at different energies (chemical shifts) and inhomogeneity in the RF actually generated by hardware over the sample volume. Here, we present Seedless, a tool to calculate NMR pulses that compensate for these effects to enhance control of magnetisation and boost signal. The calculations take only a few seconds using an optimised GRadient Ascent Pulse Engineering (GRAPE) implementation, allowing pulses to be generated ‘on-the-fly’, optimised for individual samples and spectrometers. Each calculated pulse requires bands of chemical shift to be identified, over which one of 4 transforms will be performed, selected from a set that covers all commonly used applications: a universal rotation (e.g. 90° about the x axis), including as a special case an identity operation (return spins in the same state as they started), state-to-state (e.g. Z->Y), an XYcite (Z->XY plane), or a novel type, a suppression, that leaves spins minimally perturbed at all times during the pulse. Using imaging experiments we demonstrate our pulses effectively increase the size of the coil volume and effectively increase signal-to-noise in all experiments. We illustrate the approach by devising ultra-broadband pulses (300 ppm excitation pulse for 19 F 1D spectra), a 15 N HSQC with 58% increased S/N (950 MHz spectrometer + cryoprobe), triple resonance biomolecular NMR experiments such as HNCACO with 55% increased S/N (600 MHz spectrometer + RT probe), and a highly efficient pulse sequence for water suppression. The 8 optimised pulse sequences presented required 54 bespoke pulses all calculated on-the-fly. Seedless provides a means to enhance sensitivity in all pulse sequences in a manner that can be tailored to all samples/hardware being used.
Open AccessSeedless: On-the-fly pulse calculation for NMR experiments
All NMR experiments require sequences of RF ‘pulses’ to manipulate nuclear spins. Signal is lost due to non-uniform excitation of nuclear spins resonating at different energies (chemical shifts) and inhomogeneity in the RF actually generated by hardware over the sample volume. Here, we present Seedless, a tool to calculate NMR pulses that compensate for these effects to enhance control of magnetisation and boost signal. The calculations take only a few seconds using an optimised GRadient Ascent Pulse Engineering (GRAPE) implementation, allowing pulses to be generated ‘on-the-fly’, optimised for individual samples and spectrometers. Each calculated pulse requires bands of chemical shift to be identified, over which one of 4 transforms will be performed, selected from a set that covers all commonly used applications: a universal rotation (e.g. 90° about the x axis), including as a special case an identity operation (return spins in the same state as they started), state-to-state (e.g. Z->Y), an XYcite (Z->XY plane), or a novel type, a suppression, that leaves spins minimally perturbed at all times during the pulse. Using imaging experiments we demonstrate our pulses effectively increase the size of the coil volume and effectively increase signal-to-noise in all experiments. We illustrate the approach by devising ultra-broadband pulses (300 ppm excitation pulse for 19 F 1D spectra), a 15 N HSQC with 58% increased S/N (950 MHz spectrometer + cryoprobe), triple resonance biomolecular NMR experiments such as HNCACO with 55% increased S/N (600 MHz spectrometer + RT probe), and a highly efficient pulse sequence for water suppression. The 8 optimised pulse sequences presented required 54 bespoke pulses all calculated on-the-fly. Seedless provides a means to enhance sensitivity in all pulse sequences in a manner that can be tailored to all samples/hardware being used.
- 26 January 2023
- Published by American Physical Society (APS) in Physical Review A
- Vol. 107 (1) , 012427
Efficiently computing the Uhlmann fidelity for density matrices
We consider the problem of efficiently computing the Uhlmann fidelity in the case when explicit density matrix descriptions are available. We derive an alternative formula which is simpler to evaluate numerically, saving a factor of 10 in time for large matrices.
- 26 January 2023
- Published by American Physical Society (APS) in Physical Review A
- Vol. 107 (1) , 012427
Efficiently computing the Uhlmann fidelity for density matrices
We consider the problem of efficiently computing the Uhlmann fidelity in the case when explicit density matrix descriptions are available. We derive an alternative formula which is simpler to evaluate numerically, saving a factor of 10 in time for large matrices.
- Open Access
Efficiently computing the Uhlmann fidelity for density matrices
We consider the problem of efficiently computing the Uhlmann fidelity in the case when explicit density matrix descriptions are available. We derive an alternative formula which is simpler to evaluate numerically, saving a factor of 10 in time for large matrices.
Open AccessEfficiently computing the Uhlmann fidelity for density matrices
We consider the problem of efficiently computing the Uhlmann fidelity in the case when explicit density matrix descriptions are available. We derive an alternative formula which is simpler to evaluate numerically, saving a factor of 10 in time for large matrices.
- Open Access
- 2 September 2021
- Published by American Physical Society (APS) in Physical Review X
- Vol. 11 (3) , 031049
Cross-Verification of Independent Quantum Devices
Quantum computers are on the brink of surpassing the capabilities of even the most powerful classical computers, which naturally raises the question of how one can trust the results of a quantum computer when they cannot be compared to classical simulation Here, we present a cross-verification technique that exploits the principles of measurement-based quantum computation to link quantum circuits of different input size, depth, and structure. Our technique enables consistency checks of quantum computations between independent devices, as well as within a single device. We showcase our protocol by applying it to five state-of-the-art quantum processors, based on four distinct physical architectures: nuclear magnetic resonance, superconducting circuits, trapped ions, and photonics, with up to six qubits and up to 200 distinct circuits.
- 2 September 2021
- Published by American Physical Society (APS) in Physical Review X
- Vol. 11 (3) , 031049
Open AccessCross-Verification of Independent Quantum Devices
Quantum computers are on the brink of surpassing the capabilities of even the most powerful classical computers, which naturally raises the question of how one can trust the results of a quantum computer when they cannot be compared to classical simulation Here, we present a cross-verification technique that exploits the principles of measurement-based quantum computation to link quantum circuits of different input size, depth, and structure. Our technique enables consistency checks of quantum computations between independent devices, as well as within a single device. We showcase our protocol by applying it to five state-of-the-art quantum processors, based on four distinct physical architectures: nuclear magnetic resonance, superconducting circuits, trapped ions, and photonics, with up to six qubits and up to 200 distinct circuits.
- 11 February 2021
- Published by American Physical Society (APS) in Physical Review A
- Vol. 103 (2) , 022414
Transforming pure and mixed states using an NMR quantum homogenizer
The universal quantum homogenizer can transform a qubit from any state to any other state with arbitrary accuracy, using only unitary transformations to perform this task. Here we present an implementation of a finite quantum homogenizer using nuclear magnetic resonance (NMR), with a four-qubit system. We compare the homogenization of a mixed state to a pure state and the reverse process. After accounting for the effects of decoherence in the system, we find the experimental results to be consistent with the theoretical symmetry in how the qubit states evolve in the two cases. We analyze the implications of this symmetry by interpreting the homogenizer as a physical implementation of pure state preparation and information scrambling.
- 11 February 2021
- Published by American Physical Society (APS) in Physical Review A
- Vol. 103 (2) , 022414
Transforming pure and mixed states using an NMR quantum homogenizer
The universal quantum homogenizer can transform a qubit from any state to any other state with arbitrary accuracy, using only unitary transformations to perform this task. Here we present an implementation of a finite quantum homogenizer using nuclear magnetic resonance (NMR), with a four-qubit system. We compare the homogenization of a mixed state to a pure state and the reverse process. After accounting for the effects of decoherence in the system, we find the experimental results to be consistent with the theoretical symmetry in how the qubit states evolve in the two cases. We analyze the implications of this symmetry by interpreting the homogenizer as a physical implementation of pure state preparation and information scrambling.
- 10 September 2020
- Published by American Physical Society (APS) in Physical Review A
- Vol. 102 (3) , 032405
Efficient Hamiltonian programming in qubit arrays with nearest-neighbor couplings
We consider the problem of selectively controlling couplings in a practical quantum processor with always-on interactions that are diagonal in the computational basis, using sequences of local not gates. This methodology is well known in nuclear magnetic resonance implementations, but previous approaches do not scale efficiently for the general fully connected Hamiltonian, where the complexity of finding time-optimal solutions makes them only practical up to a few tens of qubits. Given the rapid growth in the number of qubits in cutting-edge quantum processors, it is of interest to investigate the applicability of this control scheme to much larger-scale systems with realistic restrictions on connectivity. Here we present an efficient scheme to find near time-optimal solutions that can be applied to engineered qubit arrays with local connectivity for any number of qubits, indicating the potential for practical quantum computing in such systems.
- 10 September 2020
- Published by American Physical Society (APS) in Physical Review A
- Vol. 102 (3) , 032405
Efficient Hamiltonian programming in qubit arrays with nearest-neighbor couplings
We consider the problem of selectively controlling couplings in a practical quantum processor with always-on interactions that are diagonal in the computational basis, using sequences of local not gates. This methodology is well known in nuclear magnetic resonance implementations, but previous approaches do not scale efficiently for the general fully connected Hamiltonian, where the complexity of finding time-optimal solutions makes them only practical up to a few tens of qubits. Given the rapid growth in the number of qubits in cutting-edge quantum processors, it is of interest to investigate the applicability of this control scheme to much larger-scale systems with realistic restrictions on connectivity. Here we present an efficient scheme to find near time-optimal solutions that can be applied to engineered qubit arrays with local connectivity for any number of qubits, indicating the potential for practical quantum computing in such systems.
- 3 June 2020
- Published by American Physical Society (APS) in Physical Review A
- Vol. 101 (6) , 062308
Robust entangling gate for polar molecules using magnetic and microwave fields
Polar molecules are an emerging platform for quantum technologies based on their long-range electric dipole–dipole interactions, which open new possibilities for quantum information processing and the quantum simulation of strongly correlated systems. Here, we use magnetic and microwave fields to design a fast entangling gate with fidelity and which is robust with respect to fluctuations in the trapping and control fields and to small thermal excitations. These results establish the feasibility to build a scalable quantum processor with a broad range of molecular species in optical-lattice and optical-tweezers setups.- 3 June 2020
- Published by American Physical Society (APS) in Physical Review A
- Vol. 101 (6) , 062308
Robust entangling gate for polar molecules using magnetic and microwave fields
Polar molecules are an emerging platform for quantum technologies based on their long-range electric dipole–dipole interactions, which open new possibilities for quantum information processing and the quantum simulation of strongly correlated systems. Here, we use magnetic and microwave fields to design a fast entangling gate with fidelity and which is robust with respect to fluctuations in the trapping and control fields and to small thermal excitations. These results establish the feasibility to build a scalable quantum processor with a broad range of molecular species in optical-lattice and optical-tweezers setups.- Open Access
Efficient Hamiltonian programming in qubit arrays with nearest-neighbour couplings
We consider the problem of selectively controlling couplings in a practical quantum processor with always-on interactions that are diagonal in the computational basis, using sequences of local NOT gates. This methodology is well-known in NMR implementations, but previous approaches do not scale efficiently for the general fully-connected Hamiltonian, where the complexity of finding time-optimal solutions makes them only practical up to a few tens of qubits. Given the rapid growth in the number of qubits in cutting-edge quantum processors, it is of interest to investigate the applicability of this control scheme to much larger scale systems with realistic restrictions on connectivity. Here we present an efficient scheme to find near time-optimal solutions that can be applied to engineered qubit arrays with local connectivity for any number of qubits, indicating the potential for practical quantum computing in such systems.
Open AccessEfficient Hamiltonian programming in qubit arrays with nearest-neighbour couplings
We consider the problem of selectively controlling couplings in a practical quantum processor with always-on interactions that are diagonal in the computational basis, using sequences of local NOT gates. This methodology is well-known in NMR implementations, but previous approaches do not scale efficiently for the general fully-connected Hamiltonian, where the complexity of finding time-optimal solutions makes them only practical up to a few tens of qubits. Given the rapid growth in the number of qubits in cutting-edge quantum processors, it is of interest to investigate the applicability of this control scheme to much larger scale systems with realistic restrictions on connectivity. Here we present an efficient scheme to find near time-optimal solutions that can be applied to engineered qubit arrays with local connectivity for any number of qubits, indicating the potential for practical quantum computing in such systems.