Duane P. Harland
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Duane P. Harland has a total of 125 co-authors. Here are the top co-authors by number of shared publications:
- Jeffrey E. Plowman
AgResearch Ltd., 1365 Springs Rd, Lincoln 7674, New Zealand
13 shared publications - Jolon M. Dyer
Food & Bio-Based Products, AgResearch, Lincoln Research Centre, Christchurch, New Zealand
11 shared publications - Mihnea Bostina
Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand
9 shared publications Santanu Deb-Choudhury
Smart Foods & Bioproducts, AgResearch, Ltd., Lincoln, New Zealand
7 shared publications- Stefan Clerens
AgResearch Ltd., 1365 Springs Rd, Lincoln 7674, New Zealand
7 shared publications Joy L. Woods
Food and Bio-based Products Group, AgResearch, Lincoln 7608, New Zealand
6 shared publications
Latest Publications
- Open Access
- 7 July 2026
- Published by Elsevier in SSRN Electronic Journal
Serial Block-Face Scanning Electron Microscopy sample preparation methods for imaging non-conductive protein fibres
Biomaterials can be complex to study, due to a range of considerations such as shape, non-conductivity and internal changes in axial alignment, including, for fibres, natural curvature. To better understand these materials, we can use serial block-face scanning electron microscopy (SBF-SEM) for the visualization of the internal and external structures over micrometers, through a cyclic process. However, the application of this technique remains technically challenging, due to sample charging and natural morphology where the sample’s centre varies in location with respect to the resin block axis. In this study we used sheep wool fibres as a model protein-based non-infiltrated solid material to determine which stages of sample preparation could be altered to improve image quality from fibres by trialing different adherence methods, dehydration methods, and alterations to embedding resin. We found that the use of double-sided tape to adhere fibres to acetate frames improved ability to fine-tune fibre alignment and keep them straight, which improved maintenance of sample centering during long-runs of automated sectioning. Dehydration using silica gel and a vacuum resulted in cleaner images than solvent dehydration. The addition of a carbon powder to the embedding resin, even levels as low as 5% substantially reduced imaging artifacts associated with static charge accumulation. These optimizations for bio-based fibres improved the reliability of automated imaging runs to generate data for wool fibres at a suitable quality for ongoing analysis using automated segmentation tools.
- 7 July 2026
- Published by Elsevier in SSRN Electronic Journal
Open AccessSerial Block-Face Scanning Electron Microscopy sample preparation methods for imaging non-conductive protein fibres
Biomaterials can be complex to study, due to a range of considerations such as shape, non-conductivity and internal changes in axial alignment, including, for fibres, natural curvature. To better understand these materials, we can use serial block-face scanning electron microscopy (SBF-SEM) for the visualization of the internal and external structures over micrometers, through a cyclic process. However, the application of this technique remains technically challenging, due to sample charging and natural morphology where the sample’s centre varies in location with respect to the resin block axis. In this study we used sheep wool fibres as a model protein-based non-infiltrated solid material to determine which stages of sample preparation could be altered to improve image quality from fibres by trialing different adherence methods, dehydration methods, and alterations to embedding resin. We found that the use of double-sided tape to adhere fibres to acetate frames improved ability to fine-tune fibre alignment and keep them straight, which improved maintenance of sample centering during long-runs of automated sectioning. Dehydration using silica gel and a vacuum resulted in cleaner images than solvent dehydration. The addition of a carbon powder to the embedding resin, even levels as low as 5% substantially reduced imaging artifacts associated with static charge accumulation. These optimizations for bio-based fibres improved the reliability of automated imaging runs to generate data for wool fibres at a suitable quality for ongoing analysis using automated segmentation tools.
- Open Access
- 17 June 2026
- Published by The Open Journal in Journal of Open Source Software
- Vol. 11 (122)
VST: A Python-based deep learning tool for segmenting electron microscopy samples
- 17 June 2026
- Published by The Open Journal in Journal of Open Source Software
- Vol. 11 (122)
Open AccessVST: A Python-based deep learning tool for segmenting electron microscopy samples
- Open Access
- 24 February 2026
- Published by Elsevier in SSRN Electronic Journal
Serial Block-Face Scanning Electron Microscopy sample preparation methods for imaging non-conductive protein fibres
The rise of serial block-face scanning electron microscopy (SBF-SEM) allows for the visualisation of internal and external 3-dimensional structures of samples over micrometers through a cyclic process. The application of this technique to electrically insulative natural samples, such as fibres, remains technically challenging largely due to sample charging. In this study we determined which stages could be altered to improve image quality of fibres by trialling different adherence methods, dehydration methods, and alterations to embedding resin. We found that the use of double-sided tape to adhere fibres to acetate frames improved ability to fine-tune fibre alignment and keep them straight, which improved maintenance of sample centring during long-runs of automated sectioning. Dehydration using silica gel and a vacuum resulted in cleaner images than solvent dehydration. The addition of Ketjen carbon black powder to the embedding resin, even levels as low as 5% substantially reduced imaging artifacts associated with static charge accumulation. These optimisations for bio-based fibres improved reliability of automated imaging runs to generate data for wool fibres at a suitable quality for ongoing analysis using automated segmentation tools.
- 24 February 2026
- Published by Elsevier in SSRN Electronic Journal
Open AccessSerial Block-Face Scanning Electron Microscopy sample preparation methods for imaging non-conductive protein fibres
The rise of serial block-face scanning electron microscopy (SBF-SEM) allows for the visualisation of internal and external 3-dimensional structures of samples over micrometers through a cyclic process. The application of this technique to electrically insulative natural samples, such as fibres, remains technically challenging largely due to sample charging. In this study we determined which stages could be altered to improve image quality of fibres by trialling different adherence methods, dehydration methods, and alterations to embedding resin. We found that the use of double-sided tape to adhere fibres to acetate frames improved ability to fine-tune fibre alignment and keep them straight, which improved maintenance of sample centring during long-runs of automated sectioning. Dehydration using silica gel and a vacuum resulted in cleaner images than solvent dehydration. The addition of Ketjen carbon black powder to the embedding resin, even levels as low as 5% substantially reduced imaging artifacts associated with static charge accumulation. These optimisations for bio-based fibres improved reliability of automated imaging runs to generate data for wool fibres at a suitable quality for ongoing analysis using automated segmentation tools.
- Open Access
- 15 February 2026
- Published by The Company of Biologists in Journal of Cell Science
- Vol. 139 (4)
Uncovering mitotic ultrastructure in the native hair follicle using volume electron microscopy
The hair follicle undergoes repeated cycles, with anagen representing the active growth phase. During anagen, transit amplifying cells within the germinative matrix at the follicle bulb drive rapid proliferation for hair growth. This region exhibits some of the highest mitotic rates observed in any tissue, offering a rare opportunity to study mitosis in its native epithelial context, previously studied only in cultured cell lines. We applied volume electron microscopy to intact chemically fixed hair follicles enabling exceptional ultrastructural preservation of the entire mini-organ. Morphometric analysis revealed stage-specific changes in chromosomal and organelle volume and spatial distribution, highlighting coordinated roles for the mitochondria, vesicles and endoplasmic reticulum, and enabled, to our knowledge, the first ultrastructure-based karyotype of ovine chromosomes. This work advances understanding of mitosis by resolving ultrastructure in a highly proliferative, spatially constrained epithelial microenvironment, demonstrating the power of serial block face scanning electron microscopy to bridge in vitro models and native tissue architecture.
- 15 February 2026
- Published by The Company of Biologists in Journal of Cell Science
- Vol. 139 (4)
Open AccessUncovering mitotic ultrastructure in the native hair follicle using volume electron microscopy
The hair follicle undergoes repeated cycles, with anagen representing the active growth phase. During anagen, transit amplifying cells within the germinative matrix at the follicle bulb drive rapid proliferation for hair growth. This region exhibits some of the highest mitotic rates observed in any tissue, offering a rare opportunity to study mitosis in its native epithelial context, previously studied only in cultured cell lines. We applied volume electron microscopy to intact chemically fixed hair follicles enabling exceptional ultrastructural preservation of the entire mini-organ. Morphometric analysis revealed stage-specific changes in chromosomal and organelle volume and spatial distribution, highlighting coordinated roles for the mitochondria, vesicles and endoplasmic reticulum, and enabled, to our knowledge, the first ultrastructure-based karyotype of ovine chromosomes. This work advances understanding of mitosis by resolving ultrastructure in a highly proliferative, spatially constrained epithelial microenvironment, demonstrating the power of serial block face scanning electron microscopy to bridge in vitro models and native tissue architecture.
- Open Access
- 29 May 2025
- Published by Elsevier in Journal of Structural Biology
- Vol. 217 (3) , 108214
A generalist deep-learning volume segmentation tool for volume electron microscopy of biological samples
- 29 May 2025
- Published by Elsevier in Journal of Structural Biology
- Vol. 217 (3) , 108214
Open AccessA generalist deep-learning volume segmentation tool for volume electron microscopy of biological samples
- Open Access
- 1 January 2025
- Published by ScienceOpen
- p. e320
Investigating the internal structure of sheep wool hair fibre using new microscopic techniques
Investigation of the three-dimensional structure of hair fibres and follicles started in the 1960’s using sheep wool as a model. Pre-digital approaches to this included manually tracing of cell outlines from projected serial sections onto rolls of paper to line up cells. New electron microscopy techniques, automation and big-data handling allow a more efficient workflow, enabling spatial reconstructions that revolutionise how we visualize cell changes within the three-dimensional context of hair structures and during hair growth within follicles. Serial block-face scanning electron microscope (SBF-SEM) is one of the new microscopic techniques employed to determine how sheep wool and the cells within a fibre can chance along the length of the fibre. Sheep wool fibres (fine hairs) have a complex architecture with para- and ortho-cortical cells being responsible for the curliness of wool fibres ( 1, 2). However, there is no definite explanation regarding the mechanism by which they dictate the curliness of the fibre and what drives one cortical cell type over the other to cause curl. We are using SBF-SEM to be able to model where the cortical cells sit in relation to the curl. Alongside modelling of the whole fibre, we aim to segment individual cortical cells to explore how internal variation in sub-cellular morphology (macrofibrils composed of keratin fibrils) relates to cell type (ortho- or para-) and distribution across fibres with different curvatures. Within the growing fibre we aim to understand what leads to the formation of one cortical cell over the other and what this could mean for the cells and fibre formation.
- 1 January 2025
- Published by ScienceOpen
- p. e320
Open AccessInvestigating the internal structure of sheep wool hair fibre using new microscopic techniques
Investigation of the three-dimensional structure of hair fibres and follicles started in the 1960’s using sheep wool as a model. Pre-digital approaches to this included manually tracing of cell outlines from projected serial sections onto rolls of paper to line up cells. New electron microscopy techniques, automation and big-data handling allow a more efficient workflow, enabling spatial reconstructions that revolutionise how we visualize cell changes within the three-dimensional context of hair structures and during hair growth within follicles. Serial block-face scanning electron microscope (SBF-SEM) is one of the new microscopic techniques employed to determine how sheep wool and the cells within a fibre can chance along the length of the fibre. Sheep wool fibres (fine hairs) have a complex architecture with para- and ortho-cortical cells being responsible for the curliness of wool fibres ( 1, 2). However, there is no definite explanation regarding the mechanism by which they dictate the curliness of the fibre and what drives one cortical cell type over the other to cause curl. We are using SBF-SEM to be able to model where the cortical cells sit in relation to the curl. Alongside modelling of the whole fibre, we aim to segment individual cortical cells to explore how internal variation in sub-cellular morphology (macrofibrils composed of keratin fibrils) relates to cell type (ortho- or para-) and distribution across fibres with different curvatures. Within the growing fibre we aim to understand what leads to the formation of one cortical cell over the other and what this could mean for the cells and fibre formation.
- 27 April 2022
- Published by Elsevier in Biophysical Journal
- Vol. 121 (11) , 2168-2179
The susceptibility of disulfide bonds to modification in keratin fibers undergoing tensile stress
- 27 April 2022
- Published by Elsevier in Biophysical Journal
- Vol. 121 (11) , 2168-2179
The susceptibility of disulfide bonds to modification in keratin fibers undergoing tensile stress
- Open Access
- 5 August 2021
- Published by Wiley in Experimental Dermatology
- Vol. 31 (2) , 110-121
Processing hair follicles for transmission electron microscopy
Transmission electron microscopy (TEM) has greatly advanced our knowledge of hair growth and follicle morphogenesis, but complex preparations such as fixation, dehydration and embedding compromise ultrastructure. While recent developments with cryofixation have been shown to preserve the ultrastructure of biological materials close to native state, they do have limitations. This review will focus on each stage of the TEM sample preparation process and their effects on the structural integrity of follicles.
- 5 August 2021
- Published by Wiley in Experimental Dermatology
- Vol. 31 (2) , 110-121
Open AccessProcessing hair follicles for transmission electron microscopy
Transmission electron microscopy (TEM) has greatly advanced our knowledge of hair growth and follicle morphogenesis, but complex preparations such as fixation, dehydration and embedding compromise ultrastructure. While recent developments with cryofixation have been shown to preserve the ultrastructure of biological materials close to native state, they do have limitations. This review will focus on each stage of the TEM sample preparation process and their effects on the structural integrity of follicles.
- 2 August 2020
- Published by SAGE Publications in Textile Research Journal
- Vol. 91 (3-4) , 421-433
A modular modeling approach for investigating wool critical buckling from biologically variable along-fiber microstructure
Mammalian hair fibers are internally sophisticated. We introduce a modeling approach aimed at use in research that derives value from understanding how microstructural organization generates effects at the macroscopic level in the context of natural biological variation. Critical buckling load is solved using a numerical approach applied to a modular fiber microstructure model where fibers of arbitrary length are made up of snippets composed of serial cross-sections at 25 micrometer intervals. As an example, the model is applied to investigate how much effect changes to single microstructural properties (fiber ellipticity, cortical cell type distribution and cell type proportion) have on critical buckling load in the context of prickle. Potential uses and key weak areas in our knowledge of wool fiber morphology and biophysics are discussed.
- 2 August 2020
- Published by SAGE Publications in Textile Research Journal
- Vol. 91 (3-4) , 421-433
A modular modeling approach for investigating wool critical buckling from biologically variable along-fiber microstructure
Mammalian hair fibers are internally sophisticated. We introduce a modeling approach aimed at use in research that derives value from understanding how microstructural organization generates effects at the macroscopic level in the context of natural biological variation. Critical buckling load is solved using a numerical approach applied to a modular fiber microstructure model where fibers of arbitrary length are made up of snippets composed of serial cross-sections at 25 micrometer intervals. As an example, the model is applied to investigate how much effect changes to single microstructural properties (fiber ellipticity, cortical cell type distribution and cell type proportion) have on critical buckling load in the context of prickle. Potential uses and key weak areas in our knowledge of wool fiber morphology and biophysics are discussed.
- 10 February 2020
- Published by Wiley in Journal of Microscopy
- Vol. 278 (1) , 18-28
High‐pressure freezing followed by freeze substitution of a complex and variable density miniorgan: the wool follicle
Summary: Cryofixation by high‐pressure freezing (HPF) followed by freeze substitution (FS) is a preferred method to prepare biological specimens for ultrastructural studies. It has been shown to achieve uniform vitrification and ultrastructure preservation of complex structures in different cell types. One limitation of HPF is the small sample volume of <200 µm thickness and about 2000 µm across. A wool follicle is a rare intact organ in a single sample about 200 µm thick. Within each follicle, specialized cells derived from multiple cell lineages assemble, mature and cornify to make a wool fibre, which contains 95% keratin and associated proteins. In addition to their complex structure, large density changes occur during wool fibre development. Limited water movement and accessibility of fixatives are some issues that negatively affect the preservation of the follicle ultrastructure via conventional chemical processing. Here, we show that HPF‐FS of wool follicles can yield high‐quality tissue preservation for ultrastructural studies using transmission electron microscopy.
- 10 February 2020
- Published by Wiley in Journal of Microscopy
- Vol. 278 (1) , 18-28
High‐pressure freezing followed by freeze substitution of a complex and variable density miniorgan: the wool follicle
Summary: Cryofixation by high‐pressure freezing (HPF) followed by freeze substitution (FS) is a preferred method to prepare biological specimens for ultrastructural studies. It has been shown to achieve uniform vitrification and ultrastructure preservation of complex structures in different cell types. One limitation of HPF is the small sample volume of <200 µm thickness and about 2000 µm across. A wool follicle is a rare intact organ in a single sample about 200 µm thick. Within each follicle, specialized cells derived from multiple cell lineages assemble, mature and cornify to make a wool fibre, which contains 95% keratin and associated proteins. In addition to their complex structure, large density changes occur during wool fibre development. Limited water movement and accessibility of fixatives are some issues that negatively affect the preservation of the follicle ultrastructure via conventional chemical processing. Here, we show that HPF‐FS of wool follicles can yield high‐quality tissue preservation for ultrastructural studies using transmission electron microscopy.