Lucas Carvalho Ramos Silva

Soil microbes regulate whether carbon is retained in soils or returned to the atmosphere through respiration, but the extent to which microbial community characteristics improve the prediction of heterotrophic soil CO ₂ production beyond predictions by environmental controls remains unclear. We tested this across a topographically structured forest-to-marsh gradient in coastal Oregon by measuring heterotrophic soil respiration, soil physicochemical properties, PLFA-based microbial biomass, metagenomic taxonomic composition, and functional gene-based trait indicators. Across the gradient, soil moisture increased from forest to marsh, while mineral soil and organic matter C:N decreased. These environmental shifts were accompanied by strong but uneven microbial responses: total microbial, fungal, and bacterial biomass declined from forest to marsh, taxonomic composition showed the strongest structuring by environmental conditions, and functional gene-based indicators showed mixed relationships with the gradient. Environmental model comparisons identified soil moisture and organic layer C as the strongest baseline predictors of respiration. Among microbial descriptors, only a small subset improved respiration prediction beyond this environmental baseline. The fungal:bacterial (F:B) biomass ratio produced the largest increase in model fit and the greatest reduction in AICc, whereas the best taxonomic and functional-gene predictors yielded more minor gains. Our results showed that the microbial descriptors most responsive to environmental gradients were not the ones most useful for predicting soil respiration; instead, a relatively simple biomass-partitioning metric captured respiration-relevant microbial variation more effectively than finer taxonomic and genomic descriptors. This suggests that F:B ratio may be especially useful for representing respiration-relevant microbial variation in local landscape-scale studies and for future carbon cycle models applied across heterogeneous ecosystem transition zones.

Reforestation is a leading natural climate solution, but bulk soil organic carbon (C) often responds slowly, obscuring early belowground change. We tested whether soil aggregates reveal early structural reorganization that affects C retention pathways at a three-year-old experimental reforestation planting established on former pasture in Oregon, USA. We sampled soils at 0-20 and 20-40 cm beneath incense cedar ( Calocedrus decurrens ; arbuscular mycorrhizal [AM]), black cottonwood ( Populus trichocarpa ; AM and ectomycorrhizal [EcM]), ponderosa pine ( Pinus ponderosa ; EcM), and treeless controls. We measured bulk soil C concentration and C:N, aggregate size distribution and mean weight diameter (MWD), fraction-associated C, and, in a subset of surface aggregate fractions, natural-abundance δ¹³C to evaluate soil C pools, physical structure, C distribution, and C processing. After three years, reforestation did not produce significant differences in bulk soil C between planted trees and treeless controls. In surface soil, MWD averaged 36% higher under incense cedar and 58% higher under black cottonwood than under controls, whereas ponderosa pine remained similar to controls. The clearest treatment differences in C distribution occurred in macroaggregates. Incense cedar and black cottonwood had higher large (>2000 µm) macroaggregate-associated C than controls, while black cottonwood combined a greater proportion of large macroaggregates with lower C concentrations, indicating that structural development and C accumulation were partly decoupled. Species patterns were broadly consistent with stronger early aggregate responses under AM-compatible species in former-pasture legacy conditions; by contrast, the EcM-associated ponderosa pine remained closer to treeless controls across multiple aggregate measures. Treatment effects weakened with depth and were limited in microaggregates (250-53 µm) and silt-and-clay (Open Research Statement: All raw data and metadata are provided for peer-review with Dryad at xxxxx, where it will be permanently archived for public access upon acceptance.

Gelatinous zooplankton are abundant in marine ecosystems, yet their trophic roles and functional diversity in food webs have only recently gained attention. Gelatinous zooplankton taxa including hydromedusae, ctenophores, siphonophores, chaetognaths, and pelagic tunicates span multiple phyla and are often grouped taxonomically, but trait‐based categorizations have emerged as an ecologically meaningful alternative. Considering their wide variety of diets and feeding modes, we examined whether gelatinous zooplankton diet diversity can be described by feeding mode or phylum categorizations. We analyzed the carbon and nitrogen stable isotope composition (δ ¹³ C and δ ¹⁵ N values) of 490 gelatinous zooplankton samples of 32 genera/species collected across seasons and shelf positions in the northern California Current ecosystem. The δ ¹³ C and δ ¹⁵ N values fell into distinct groups when taxa were categorized three ways—by phylum, feeding mode, and feeding anatomy—indicating that both taxonomic and trait‐based approaches are useful for describing the trophic diversity of gelatinous zooplankton. Even when gelatinous specimens cannot be identified taxonomically, their diets likely resemble those of taxa sharing the same feeding mode or anatomy. These insights refine our knowledge of marine food webs and facilitate the incorporation of these ubiquitous members of the food web into ecosystem models.

Soils have been proposed as a tool to reduce atmospheric carbon dioxide (CO ₂ ). However, sparse field data and soil databases that do not account for geomorphic controls on soil properties hinder accurate quantification of soil organic carbon (SOC) dynamics at the watershed scale. In mountainous terrain, relict landslide deposits are common and feature thick (>5 m), weathered profiles with substantial SOC below the typically measured top 30 cm of soil. We generated a SOC-age relationship using a landslide chronosequence in Western Oregon where these landforms are abundant. We applied our relationships to an inventory of nearly 10,000 previously dated landslides and show that deep SOC stocks constitute ~70% of the total stock for landslides >41.8 thousand years. Our findings also show that SOC stocks associated with deep-seated landslides are >2× larger than estimates from a global model that does not account for geomorphic controls. These results suggest that geomorphology can improve our ability to quantify SOC stocks and could inform watershed management.

Riparian zones are a critical terrestrial‐aquatic ecotone. They play important roles in ecosystems including (1) harboring biodiversity, (2) influencing light and carbon fluxes to aquatic food webs, (3) maintaining water quality and streamflow, (4) enhancing aquatic habitat, (5) influencing greenhouse gas production, and (6) sequestering carbon. Defining what qualifies as a riparian zone is a first step to delineation. Many definitions of riparian boundaries focus on static attributes or a subset of potential functions without recognizing that they are spatially continuous, temporally dynamic, and multi‐dimensional. We emphasize that definitions should consider multiple ecological and biogeochemical functions and physical gradients, and explore how this approach influences spatial characterization of riparian zones. One or more of the following properties can guide riparian delineation: (1) distinct species, elevated biodiversity, or species with specific adaptations to flooding and inundation near streams relative to nearby upland areas; (2) unique vegetation structure directly influencing irradiance or organic material inputs to aquatic ecosystems; (3) hydrologic and geomorphic features or processes maintaining floodplains; (4) hydric soil properties that differ from the uplands; and/or (5) elevated retention of dissolved and suspended materials relative to adjacent uplands. Considering these properties for an operational and dynamic definition of riparian zones recognizes that riparian boundaries vary in space (e.g., variation of riparian corridor widths within or among watersheds) and time (e.g., responses to hydrological variance and climate change). Inclusive definitions addressing multiple riparian functions could facilitate attainment of research and management goals by linking properties of interest to specific outcomes.

Increasing drought pressure under anthropogenic climate change may jeopardize the potential of tropical forests to capture carbon in woody biomass and act as a long-term carbon dioxide sink. To evaluate this risk, we assessed drought impacts in 483 tree-ring chronologies from across the tropics and found an overall modest stem growth decline (2.5% with a 95% confidence interval of 2.2 to 2.7%) during the 10% driest years since 1930. Stem growth declines exceeded 10% in 25% of cases and were larger at hotter and drier sites and for gymnosperms compared with angiosperms. Growth declines generally did not outlast drought years and were partially mitigated by growth stimulation in wet years. Thus, pantropical forest carbon sequestration through stem growth has hitherto shown drought resilience that may, however, diminish under future climate change.

Reforestation of degraded riparian areas provides climate mitigation benefits through increased carbon (C) storage. However, the magnitude of this potential natural climate solution (NCS) remains uncertain across ecoregions. Few studies have evaluated riparian planting C sequestration and storage, particularly in highly productive wet riparian ecosystems. In recent decades, riparian reforestation has accelerated in the Pacific Northwest (PNW) of the United States, primarily aiming to restore ecosystem functions and associated benefits. Using these plantings as a ‘natural experiment’, we assessed C storage in woody vegetation (trees and shrubs) and soils across a chronosequence of PNW riparian reforestation sites. Our study evaluated changes in C storage with planting age and identified key covariates affecting C storage in plants and soils and their relationship with planting age across a ∼430 km latitudinal gradient in western Oregon, USA. We found that woody and soil C stocks increase with planting age, averaging 24% and 1% per year, respectively. Increases in tree C were strongly driven by increasing planting age and tree stem density. Understory C was weakly related to stand characteristics and geomorphic properties, and strongly related to planting age. Soil C gains were positively driven by precipitation. We find that riparian reforestation can result in increased C storage, with woody vegetation comprising most of the increase. Our results highlight the importance of including both trees and shrubs in plantings to realize C accumulation gains in the earlier years. Because C accumulation is gradual, yet compounding (i.e. 10+ and 15+ years for total C stocks to increase by 1.95, and 19.2 Mg C ha⁻¹, respectively), riparian reforestation projects implemented today could take over a decade to deliver high NCS benefits, emphasizing the urgency to implement these projects to limit the worst of climate change impacts.

Increasing warming and drought severity are projected for the Pacific Northwest (PNW) and are expected to negatively impact species composition and ecosystem function. In this study, we test the hypothesis that the impact of climatic stress (i.e., experimental warming and drought) on PNW grasslands are mediated by interactions between plant functional diversity and soil biogeochemical processes, including symbiotic nitrogen (N) fixation in legumes and free‐living asymbiotic nitrogen fixation (ANF) by soil microorganisms. To test this hypothesis, we measured the response of plants and soils to three years of warming (+2.5°C) and drought (−40% precipitation) in field experiments replicated at three different sites across a ∼520‐km latitudinal gradient. We observed interactive effects of warming and drought on functional diversity and soil biogeochemical properties, including both positive and negative changes in ANF. Although direct measurements of symbiotic nitrogen fixation (SNF) rates were not conducted, the observed variations in ANF, in conjunction with changes in legume cover, suggest a compensatory mechanism that may offset reductions in SNF. Generally, high ANF rates coincided with low legume cover, suggesting a connection between shifts in species composition and N cycling. Our ANF estimates were performed using isotopically labeled dinitrogen (¹⁵N₂) in tandem with soil carbon (C), phosphorus (P) and iron (Fe), pH, and moisture content. Along the latitudinal drought severity gradient, ANF rates were correlated with changes in species composition and soil N, P, moisture, and pH levels. These results highlight the importance of soil‐plant‐atmosphere interactions in understanding the impacts of climatic stress on ecosystem composition and function.

Understanding the response of forests to the increases in atmospheric CO₂ (c_a) is fundamental to implementing innovative management strategies and for assessing impacts on the global carbon and water cycles. Here, we explored correlations between ecophysiological traits and climate variability that influence changes in stable isotope carbon and oxygen (δ¹³C and δ¹⁸O) of tree‐rings. We present these relationships between species of the contrasting genera Abies and Pinus, along a latitudinal transect encompassing different biogeographical regions in North America. We also tested if the rate of intrinsic water‐use efficiency per unit of c_a (dW/dc_a) during two periods (1890–1965 vs. 1966–2016), for fir and pine were different and indicated acclimation to c_a increases. We hypothesize that, spatially and temporally, the divergent responses among species to carbon and oxygen isotopes and dW/dc_a are influenced by the site conditions and the historical increases in c_a. From our results, we show that fir and pine species will behave physiologically different as global warming progresses. Firs are more responsive to atmosphere vapor pressure deficit along different geographical zones. The survival of forests species under climate change will rely on the response to water stress and species' traits that influence the regulation of dW. Finally, we want to highlight the concept of “progressive resource limitation” of soil water and nutrients, previously proposed by other authors, that likely indicate fir species that inhabit moister sites will benefit more from increased c_a than pine, but this positive effect is likely transitory as global warming increases.

Plants and mycorrhizal fungi form mutualistic relationships that affect how resources flow between organisms and within ecosystems. Common mycorrhizal networks (CMNs) could facilitate preferential transfer of carbon and limiting nutrients, but this remains difficult to predict. Do CMNs favour fungal resource acquisition at the expense of plant resource demands (a fungi‐centric view), or are they passive channels through which plants regulate resource fluxes (a plant‐centric view)? We used stable isotope tracers (¹³CO₂ and ¹⁵NH₃), plant traits, and mycorrhizal DNA to quantify above‐ and below‐ground carbon and nitrogen transfer between 18 plant species along a 520‐km latitudinal gradient in the Pacific Northwest, USA. Plant functional type and tissue stoichiometry were the most important predictors of interspecific resource transfer. Of ‘donor’ plants, 98% were ¹³C‐enriched, but we detected transfer in only 2% of ‘receiver’ plants. However, all donors were ¹⁵N‐enriched and we detected transfer in 81% of receivers. Nitrogen was preferentially transferred to annuals (0.26 ± 0.50 mg N per g leaf mass) compared with perennials (0.13 ± 0.30 mg N per g leaf mass). This corresponded with tissue stoichiometry differences. Synthesis Our findings suggest that plants and fungi that are located closer together in space and with stronger demand for resources over time are more likely to receive larger amounts of those limiting resources. Read the free Plain Language Summary for this article on the Journal blog.