Current Organizations / Institutes

The organizations/institutes from the scholar's latest article

Previous Organizations / Institutes

The organizations / institutes from the scholar's other articles in the past ten years


Filipa Timóteo-Ferreira has a total of 79 co-authors. Here are the top co-authors by number of shared publications:

  • Elisabete Silva

    CBIOS—Research Center for Biosciences & Health Technologies, Universidade Lusófona, Campo Grande 376, 1749-024 Lisboa, Portugal

    4 shared publications
  • Henrique Almeida

    Departmento de Biomedicina - Unidade de Biologia Experimental, Faculdade de Medicina da Universidade do Porto, Porto 4200-319, Portugal; i3S-Instituto de Investigação e Inovação em Saúde, University of Porto, Porto 4200-135, Portugal; Obstetrics and Gynaecology, Hospital-CUF Porto, Porto 4100-180, Portugal

    4 shared publications
  • Sara Mendes

    Research Center in Sports Sciences, Health Sciences and Human Development, CIDESD, University of Maia, 4475-690 Maia, Portugal

    4 shared publications
  • Adriana Raquel Rodrigues

    Departmento de Biomedicina - Unidade de Biologia Experimental, Faculdade de Medicina da Universidade do Porto, Porto 4200-319, Portugal; i3S-Instituto de Investigação e Inovação em Saúde, University of Porto, Porto 4200-135, Portugal; Faculdade de Ciências da Nutrição e Alimentação da Universidade Porto, Rua do Campo Alegre, Porto 4150-180, Portugal

    3 shared publications
  • Cristiana Barone

    School of Medicine and Surgery, University of Milano-Bicocca, Monza, Italy

    3 shared publications
  • Liliana Matos

    Intituto de Biologia Molecular e Celular (IBMC)/ Instituto de Inovação e Investigação em Saúde (I3S), Porto University, Portugal; Unit of Experimental Biology, Department of Biomedicine, Faculty of Medicine, Porto University, Portugal; Faculty of Dental Medicine, Porto University, Portugal; Faculty of Nutrition and Food Sciences, Porto University, Portugal

    3 shared publications

Latest Publications

  • Open Access

    Single-cell transcriptomics highlights macrophage-driven regulation of EndMT and repair in injured muscle

    by Filipa Timóteo-Ferreira, Mauro Bergamaschi, Riccardo Gamberale, Cristiana Barone, Cristina D’ORlando, Anna Sofia Tascini, Veronica Bonalume, Raffaella Meneveri, Alessandro Fantin, Emanuele Azzoni, et al.

    Following muscle injury, a series of well-coordinated events ensures proper healing. Among these, inflammatory cells, particularly macrophages (MPs), play a fundamental role by phagocytosing damaged tissue and coordinating the actions of other cells involved in regeneration. Partial depletion of infiltrating MPs has been associated with endothelial cells (ECs) undergoing endothelial-to-mesenchymal transition (EndMT), contributing to extracellular matrix accumulation. However, the specific mechanisms linking MPs to this process, as well as their role in influencing EC fate, remain unclear. Here, we adopt a single-cell transcriptomics approach in mice to define a specific signature of the regenerating muscle niche. We show that perturbing MP recruitment upon injury results in impaired MP polarization, creating an aberrant inflammatory, non-regenerative, and less angiogenic microenvironment, which in turn drives ECs toward EndMT. Furthermore, we highlight complex signalling interactions between MPs and ECs, with SPP1 emerging as one of the critical modulators of these processes.


  • Open Access

    Fetal-restricted hematopoietic progenitors arise from hemogenic endothelium in vitelline and umbilical arteries

    by Cristiana Barone, Giulia Quattrini, Alessandro Muratore, Giorgio Anselmi, Yurim Park, Naeema T. Mehmood, Elena Morganti, Roberto Orsenigo, Filipa Timóteo-Ferreira, Anna Cazzola, et al.

    Embryonic hematopoiesis involves successive waves of progenitors from distinct anatomical sites, but the origins and contributions of early hematopoietic stem and progenitor cells (HSPCs) remain incompletely defined. Here we use genetic fate mapping in mice to temporally label hemogenic endothelium (HE) subsets and track their progeny. We show that a wave of fetal-restricted HSPCs arises from HE in the vitelline and umbilical arteries between embryonic days 8.5 and 9.5, preceding the emergence of definitive hematopoietic stem cells. Lineage tracing, single-cell transcriptomic analyses and functional assays revealed that these progenitors are transient and distinct from erythro-myeloid progenitors, contribute extensively to fetal lympho-myelopoiesis but decline postnatally. Our findings reveal a previously unrecognized early HE wave as a key source of fetal-restricted HSPCs, refining the spatial–temporal understanding of layered hematopoiesis and informing developmental origins of blood cell diversity.


  • Open Access

    Single-cell profiling reveals three endothelial-to-hematopoietic transitions with divergent isoform expression landscapes

    by Wen Hao Neo, Muhammad Zaki Hidayatullah Fadlullah, Harshangda Bhatnagar, Cristiana Barone, Giulia Quattrini, Filipa Timóteo-Ferreira, Joana Carrelha, Gianluca Sala, Robert Sellers, John Weightman, et al.

    Hemogenic endothelium (HE) is recognized as the origin of all definitive blood cells, including hematopoietic stem cells (HSCs); however, the mechanisms governing the hematopoietic progenitor versus HSC fate choice within the HE remain unknown. Here we combine differentiation assays with full-length single-cell transcriptome data for extra-embryonic yolk sac (YS) and intra-embryonic aorta–gonad–mesonephros (AGM) region HE populations. We identified and localized three differentiation trajectories, each containing a distinct HE subset: erythromyeloid progenitor-primed HE in the YS plexus, lymphomyeloid progenitor-primed HE in large YS arteries and hematopoietic stem and progenitor cell-primed HE in the AGM. Chromatin modifiers and spliceosome components were enriched in AGM HE. This correlated with a higher isoform complexity of the AGM HE transcriptome. Distinct AGM HE-specific isoform expression patterns were observed for a broad range of genes, including stemness-associated factors like Runx1 . Our data form a unique resource for studying cell fate decisions in different HE populations.


  • Open Access

    Single-Cell Transcriptomics Highlights Macrophage-Driven Regulation of EndMT and Repair in Injured Muscle

    by Silvia Brunelli, Filipa Timóteo-Ferreira, Riccardo Gamberale, Cristiana Barone, Cristina D'ORlando, Mauro Bergamaschi, Anna Sofia Tascini, Raffaella Meneveri, Emanule Azzoni

    Following muscle injury, a series of well-coordinated events ensure proper healing. Among these, inflammatory cells, particularly macrophages (MPs), play a fundamental role by phagocytosing damaged tissue and coordinating the actions of other cells involved in regeneration. Partial depletion of infiltrating MPs has been associated with endothelial cells (ECs) undergoing endothelial-to-mesenchymal transition (EndMT), contributing to extracellular matrix accumulation. However, the specific mechanisms linking MPs to this process, as well as their role in influencing EC fate, remain unclear. Here, we adopt a single cell transcriptomics approach in mice to define a specific signature of the regenerating muscle niche. We show that perturbing MP recruitment upon injury results in impaired MP polarization, creating an aberrant inflammatory, non-regenerative, and less angiogenic microenvironment which in turn drives ECs toward EndMT. Furthermore, we highlight complex signalling interactions between MPs and ECs, with SPP1 emerging as one of the critical modulators of these processes.

  • Redox imbalance in age-related ovarian dysfunction and perspectives for its prevention

    by F. Timóteo-Ferreira, D. Abreu, S. Mendes, L. Matos, A.R. Rodrigues, H. Almeida, E. Silva


  • Age-related oxidative modifications to uterine albumin impair extravillous trophoblast cells function

    by S. Mendes, F. Timóteo-Ferreira, A.I. Soares, A.R. Rodrigues, A.M.N. Silva, S. Silveira, L. Matos, J. Saraiva, L. Guedes-Martins, H. Almeida, et al.


  • Open Access

    Apocynin Dietary Supplementation Delays Mouse Ovarian Ageing

    by F. Timóteo-Ferreira, S. Mendes, N. A. Rocha, L. Matos, A. R. Rodrigues, H. Almeida, E. Silva

    Advanced maternal age is associated with higher infertility rates, pregnancy-associated complications, and progeny health issues. The ovary is considered the main responsible for these consequences due to a continuous decay in follicle number and oocyte quality. Intracellular imbalance between oxidant molecules and antioxidant mechanisms, in favour of the former, results in oxidative stress (OS) that is believed to contribute to ovarian ageing. This work is aimed at evaluating whether an age-related increase in ovarian OS, inflammation, and fibrosis may contribute to tissue dysfunction and whether specific antioxidant supplementation with a NADPH oxidase inhibitor (apocynin) could ameliorate them. Mice aged 8–12 weeks (reproductively young) or 38-42 weeks (reproductively aged) were employed. Aged mice were divided into two groups, with one receiving apocynin (5 mM) in the drinking water, for 7 weeks, upon which animals were sacrificed and their ovaries collected. Ovarian structure was similar at both ages, but the ovaries from reproductively aged mice exhibited lipofuscin deposition, enhanced fibrosis, and a significant age-related reduction in primordial and primary follicle number when compared to younger animals. Protein carbonylation and nitration, and markers of OS were significantly increased with age. Moreover, mRNA levels of inflammation markers, collagens, metalloproteinases (MMPs), and tissue inhibitor MMPs (TIMPs) were upregulated. Expression of the antifibrotic miRNA29c-3p was significantly reduced. Apocynin supplementation ameliorated most of the age-related observed changes, sometimes to values similar to those observed in young females. These findings indicate that there is an age-related increase in OS that plays an important role in enhancing inflammation and collagen deposition, contributing to a decline in female fertility. Apocynin supplementation suggests that the imbalance can be ameliorated and thus delay ovarian ageing harmful effects.


  • Open Access

    New Insights into the Process of Placentation and the Role of Oxidative Uterine Microenvironment

    by Sara Mendes, Filipa Timóteo-Ferreira, Henrique Almeida, Elisabete Silva

    For a successful pregnancy to occur, a predecidualized receptive endometrium must be invaded by placental differentiated cells (extravillous trophoblast cells (EVTs)) and, at the same time, continue decidualization. EVT invasion is aimed at anchoring the placenta to the maternal uterus and ensuring local blood supply increase necessary to provide normal placental and foetal development. The first is achieved by migrating through the maternal endometrium and deeper into the myometrium, while the second by transforming uterine spiral arteries into large vessels. This process is a tightly regulated battle comprising interests of both the mother and the foetus. Invading EVTs are required to perform a scope of functions: move, adhere, proliferate, differentiate, interact, and digest the extracellular matrix (ECM); tolerate hypoxia; transform the maternal spiral arteries; and die by apoptosis. All these functions are modulated by their surrounding microenvironment: oxygen, soluble factors (e.g., cytokines, growth factors, and hormones), ECM proteins, and reactive oxygen species. A deeper comprehension of oxidative uterine microenvironment contribution to trophoblast function will be addressed in this review.