Michael Andrew Walker

Erysiphe necator, the causal agent of grapevine powdery mildew, is the most damaging pathogen in global viticulture. To characterize its population structure, genetic diversity, and dispersal patterns, we analyzed 410 isolates collected from major viticultural regions across Europe, the Americas, China, and Australia between 2012 and 2017. Genotyping employed 20 simple sequence repeat (SSR) markers, including 16 newly developed for this study, together with three nuclear loci (Tub2, EF1-α, IGS), enabling high resolution inference of global population structure, lineage connectivity, and diversity. The combined dataset revealed high genetic diversity and two major clusters with continental differentiation. Hierarchical analyses resolved additional substructure corresponding to geographic origin and regional adaptation. A distinct Australian cluster was recovered, consistent with geographic isolation and restricted gene flow. In the United States, Western populations displayed multilocus genotype richness comparable to Eastern populations but slightly lower allelic richness and the highest number of private alleles, a pattern consistent with regional diversification potentially on native Vitis hosts rather than recent European introduction. Fine‑scale structure in California, Oregon, and Australia indicated contributions from repeated introductions, environmental heterogeneity, and region‑specific selective pressures. Contrasting patterns of multilocus linkage disequilibrium revealed mixed reproductive modes, with some lineages dominated by clonality and others showing signatures of recombination and admixture. Collectively, these findings refine the global population landscape of E. necator, identify regions of elevated pathogen diversity, and underscore the need for regionally tailored surveillance and integrated management strategies as human mediated movement continues to shape global pathogen population structure.

Climate change is advancing ripening and can impair phenolic maturity in grapes, compromising anthocyanins and stilbenes that affect the wine color and stability. We tested whether exogenous abscisic acid (ABA) mitigates warming-induced shifts in the phenylpropanoid pathway in the ’Malbec’ red wine grape variety. A factorial field experiment compared control temperature (−T) and elevated temperature (+T, +2.5 °C), with and without ABA sprays (three applications after veraison). Berry skin gene expression (ten flavonoid and stilbene genes) was monitored across ripening and summarized using time-course and AUC-based clustering. Anthocyanins were quantified in berry skins at harvest and in the corresponding wines, and stilbenes were quantified in wines. Warming reduced MYBA1 early in ripening and decreased anthocyanins and stilbenes overall. Meanwhile, ABA reinforced a late anthocyanin program under −T (MYBA1, UFGT, MYBC2-L3, F3′5′H), consistent with a shift toward the 3′,5′-hydroxylated/malvidin-type branch. Conversely, stilbenes remained suppressed under +T, with limited recovery under +T/+ABA. Time-integrated expression patterns and Spearman correlations consistently linked CHS2, F3′5′H, UFGT, MYBC2-L3, with variation in berry skin anthocyanins across treatments, while STS AUC tracked wine stilbenes. Overall, ABA partially buffered warming effects on ‘Malbec’ color by reinforcing late anthocyanin regulation but did not prevent warming-driven declines in wine stilbenes.

The Chinese grape accession Vitis piasezkii DVIT2027 carries two loci associated with powdery mildew (PM) resistance loci, Ren6 and Ren7, which differ in timing and strength of response to Erysiphe necator. Both loci are consistent with recognition by intracellular immune receptors. To identify the underlying nucleotide-binding leucine-rich repeat (NLR) genes, we assembled chromosome-scale diploid genomes of DVIT2027 and the susceptible V. vinifera F2-35, parents of a segregating F1 population. We integrated these assemblies with deep resequencing data from eight F1 sib-lines carrying different Ren6/Ren7 combinations and generated trio-binned, parent-phased genomes for six progeny. This resolved both PM-resistant (PMR) and PM-susceptible (PMS) haplotypes at Ren6 and Ren7. Comparative analyses revealed extensive structural variation and complete haplotype specificity among NLRs, with several candidate genes lacking allelic counterparts in PMS haplotypes. Expression profiling across PMR sib-lines identified four and two CC-NBS-LRR genes potentially associated with Ren6 and Ren7, respectively. Sequence graph reconstruction of these loci across multiple V. piasezkii accessions revealed broad intraspecific diversity and DVIT2027-specific nodes, including within candidate NLR genes. These results provide a high-resolution view of Ren6 and Ren7 and support the identification of resistance gene candidates for functional validation and grapevine breeding.

Grapevine is one of the most economically important fruit crops cultivated worldwide. However, grapevine is highly susceptible to virus infections and exposed to the most diverse forms of viral diseases compared to other fruit crops, and virus-induced incompatibility affects plant growth to different degrees ranging from decline to death. The influence of virus-induced incompatibility could be mitigated to an acceptable level by using appropriate rootstocks. However, the viral tolerance of various grapevine rootstocks with diverse genetic backgrounds remains unclear, along with the identification of the specific viral tolerance factors. In this study, the viral tolerance of 21 grapevine rootstocks was evaluated in a green grafting system. Cabernet Franc varieties infected with a single virus [grapevine leafroll associated virus-1 (GLRaV-1)], a co-infection of two viruses (GLRaV-1 plus grapevine virus A—GVA), and no infection were used as the scions, respectively. The vegetative growth and photosynthetic function of the grafts were analyzed 4 months after grafting. The results indicated that some rootstocks could alleviate the influence of the virus infection, with vegetative growth and photosynthetic function sustained at a normal level, whereas other rootstocks were susceptible to the virus infection, resulting in a decline in the growth and photosynthetic function of the grafts. Our research provides evidence for the existence and diversity of viral tolerance among grapevine rootstocks, offering important information for appropriate rootstock selection in the establishment of new vineyards and in the breeding of grapevine rootstocks with enhanced viral tolerance.

ISHS XV International Asparagus Symposium Growth and yield of one-year-old asparagus (Asparagus officinalis) plants by two cropping types in Japan

Root-knot nematodes (RKNs) Meloidogyne spp. are extremely polyphagous pests and four species severely affect grapevines throughout the world: M. arenaria, M. incognita, M. javanica and M. ethiopica. Californian populations of M. arenaria and M. incognita are reported to be virulent to widely used rootstocks and to the rootstock ‘Harmony’ in particular. Breeding RKNs-resistant grape rootstocks is a promising alternative to highly toxic nematicides. Muscadine (Vitis rotundifolia syn. Muscadinia rotundifolia) is a resistance (R) source with undercharacterised genetics. To this end, we used a segregating progeny between the RKN-resistant Vitis x Muscadinia accession ‘VRH8771’ from the muscadine source ‘NC184-4’ and the RKN-susceptible V. vinifera cv. Cabernet-Sauvignon. We first phenotyped its resistance to isolates of the i) M. arenaria, ii) M. incognita and iii) M. javanica species, and then to iv) two mixed Harmony-virulent Californian populations of M. arenaria and M. incognita. Finally, we created an isolate of M. arenaria and M. incognita from these Harmony populations and phenotyped the progeny to each of them [v) and vi)], and to vii) an isolate of M. ethiopica. The resistance phenotype of all the progeny’s individuals was independent of the RKN isolates or populations used. Resistance was mapped in a region of chromosome 18 in VRH8771, supporting the hypothesis that it is conferred by a single gene with an unprecedented wide spectrum in grapevine, including Harmony-virulent isolates. This dominant gene, referred to as MsppR1, is linked to the telomeric QTL XiR4 for X. index resistance from the same source. Additionally, plant mortality data showed that MsppR1-resistant material expressed a high-level resistance to the Harmony-virulent isolates. Our results are a first step towards the development of marker-assisted breeding using SSR and SNP markers for resistance to RKNs in accession VRH8771.

Adjusting yearly pruning severity is a common vineyard management practice employed to manipulate vegetative and reproductive growth in grapevines. Although the effects of pruning on total vegetative growth are well documented, there is little research on the effects of adjusting shoots meter⁻¹ via dormant season pruning on addressing mid-cordon shoot weakness and developmental delays. Cordon-trained, spur-pruned vines are thought, by many growers, to be especially prone to weaker positions and delayed development at mid-cordon positions. This phenomenon is also thought to become more exaggerated as the vine ages. Therefore, the effects of shoot density manipulation, implemented via dormant pruning practices, to homogenize shoot and cluster development along the length of the cordon were examined. In this research, Cabernet Sauvignon grapevines were pruned to either 5.5 shoots meter⁻¹ (5.5) or 11.1 shoots meter⁻¹ (11.1). To control for variations in light interception into the fruiting zone, a control of 11.1 shoots meter⁻¹ with sensor guided leaf thinning (11.1LT) was implemented at full berry set to match the canopy light of the 5.5 shoots meter⁻¹ treatment. It was found that individual shoot growth and yield were directly impacted by manipulation of pruning severity. Shoot growth response varied primarily by growing season, including shoot length and internode length. Yield components were significantly lower in the 5.5 treatment during the first two years of the study but were not significantly different during the last year of the study. The 5.5 treatment resulted in the highest pH and total soluble solids at harvest in 2016 and 2017.

Muscadinia rotundifolia cv. Trayshed is a valuable source of resistance to grape powdery mildew. It carries 2 powdery mildew resistance-associated genetic loci, Run1.2 on chromosome 12 and Run2.2 on chromosome 18. The purpose of this study was to identify candidate resistance genes associated with each haplotype of the 2 loci. Both haplotypes of each resistance-associated locus were identified, phased, and reconstructed. Haplotype phasing allowed the identification of several structural variation events between haplotypes of both loci. Combined with a manual refinement of the gene models, we found that the heterozygous structural variants affected the gene content, with some resulting in duplicated or hemizygous nucleotide-binding leucine-rich repeat genes. Heterozygous structural variations were also found to impact the domain composition of some nucleotide-binding leucine-rich repeat proteins. By comparing the nucleotide-binding leucine-rich repeat proteins at Run1.2 and Run2.2 loci, we discovered that the 2 loci include different numbers and classes of nucleotide-binding leucine-rich repeat genes. To identify powdery mildew resistance-associated genes, we performed a gene expression profiling of the nucleotide-binding leucine-rich repeat genes at Run1.2b and Run2.2 loci with or without powdery mildew present. Several nucleotide-binding leucine-rich repeat genes were constitutively expressed, suggesting a role in powdery mildew resistance. These first complete, haplotype-resolved resistance-associated loci and the candidate nucleotide-binding leucine-rich repeat genes identified by this study are new resources that can aid the development of powdery mildew-resistant grape cultivars.

This is the first report evaluating the genetic diversity of Mexican grape species utilizing DNA-based markers to understand the distribution of grape species, and patterns of hybridization. The study utilized accessions maintained in three collections in Mexico, one in the USA and recently collected germplasm. Fifteen SSR markers were used to develop a fingerprint database to identify unique germplasm. Two different clustering analyses without prior population assignment, were used to identify groups that were verified by a Discriminant Analysis of Principal Components and a Principal Coordinate Analysis. Genetic diversity estimates were made across and within groups to validate the results obtained from the clustering analyses. Multiple clustering analyses and diversity parameters supported six genetic groups representing different geographic regions. The Northeastern group was the most diverse with a geographic range extending to Eastern and Central Mexico, while the Coahuila group was the least diverse. Vitis arizonica Engelm. and Vitis cinerea Engelm. ex Millardet were the most abundant species with many hybrid forms. We provide evidence that wild grape species in Mexico follow the physical barriers of mountain ranges like the Sierra Madre Oriental with an east–west divide and the Trans-Mexican Volcanic Belt as a corridor for gene flow among different grape species. Additional collections are required to fully understand the extent of hybridization and to clarify hybrid zones.

Background: Introgressive hybridization can reassort genetic variants into beneficial combinations, permitting adaptation to new ecological niches. To evaluate evolutionary patterns and dynamics that contribute to introgression, we investigate six wildVitisspecies that are native to the Southwestern United States and useful for breeding grapevine (V. vinifera) rootstocks.Results: By creating a reference genome assembly from one wild species,V. arizonica, and by resequencing 130 accessions, we focus on identifying putatively introgressed regions (pIRs) between species. We find six species pairs with signals of introgression between them, comprising up to ~ 8% of the extant genome for some pairs. The pIRs tend to be gene poor, located in regions of high recombination and enriched for genes implicated in disease resistance functions. To assess potential pIR function, we explore SNP associations to bioclimatic variables and to bacterial levels after infection with the causative agent of Pierce’s disease (Xylella fastidiosa). pIRs are enriched for SNPs associated with both climate and bacterial levels, suggesting that introgression is driven by adaptation to biotic and abiotic stressors.Conclusions: Altogether, this study yields insights into the genomic extent of introgression, potential pressures that shape adaptive introgression, and the evolutionary history of economically important wild relatives of a critical crop.