MLMichael Yi Li

Michael Yi Li

*This is an algorithmically generated author record based on publicly available information.

Current Organizations / Institutes

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Previous Organizations / Institutes

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Michael Yi Li has a total of 69 co-authors. Here are the top co-authors by number of shared publications:


Latest Publications

  • A discrete state-structured model on networks with two transmission modes: Global dynamics analysis

    by Guyue Liu, Suli Liu, Michael Y. Li

    In this paper, we formulate and analyze a class of discrete state-structured epidemic models that spread through both horizontal and vertical transmissions on networks, where infected individuals can move from one infected state to any other state so that our models include all possible state-transfers (disease deterioration and amelioration) among different states. Many epidemic transmissions with or without vertical transmission in nature can be analyzed by referring to our models, such as HIV-1, viral hepatitis, and Covid-19. We derive the basic reproduction number $ \mathcal{R}_0 $ = $ \mathcal{R}_h $+ $ \mathcal{R}_v $, and prove that the global dynamics are completely determined by the basic reproduction number: if $ \mathcal{R}_0\leq 1 $, the disease-free equilibrium is globally asymptotically stable and the disease always dies out; if $ \mathcal{R}_0>1 $, the disease-free equilibrium is unstable, and there exists a unique endemic equilibrium that is globally asymptotically stable, and the disease persists at a positive level in the population. It also implies that vertical transmission has an impact on maintaining infectious diseases when horizontal transmission cannot sustain the disease on its own. The proof of global stability is based on the graph-theoretic approach and answer the open problem left in [1]. Finally, numerical simulations are performed to illustrate the theoretical results.


  • Open Access

    Mathematical modeling of the dynamics of COVID-19 variants of concern: Asymptotic and finite-time perspectives

    by Adriana-Stefania Ciupeanu, Marie Varughese, Weston C. Roda, Donglin Han, Qun Cheng, Michael Y. Li

    The COVID-19 pandemic has seen multiple waves, in part due to the implementation and relaxation of social distancing measures by the public health authorities around the world, and also caused by the emergence of new variants of concern (VOCs) of the SARS-Cov-2 virus. As the COVID-19 pandemic is expected to transition into an endemic state, how to manage outbreaks caused by newly emerging VOCs has become one of the primary public health issues. Using mathematical modeling tools, we investigated the dynamics of VOCs, both in a general theoretical framework and based on observations from public health data of past COVID-19 waves, with the objective of understanding key factors that determine the dominance and coexistence of VOCs. Our results show that the transmissibility advantage of a new VOC is a main factor for it to become dominant. Additionally, our modeling study indicates that the initial number of people infected with the new VOC plays an important role in determining the size of the epidemic. Our results also support the evidence that public health measures targeting the newly emerging VOC taken in the early phase of its spread can limit the size of the epidemic caused by the new VOC (Wu et al., 2139Wu, Scarabel, Majeed, Bragazzi, & Orbinski, ; Wu et al., 2021).


  • Modeling the second outbreak of COVID-19 with isolation and contact tracing

    by Haitao Song, Fang Liu, Feng Li, Xiaochun Cao, Hao Wang, Zhongwei Jia, Huaiping Zhu, Michael Y. Li, Wei Lin, Hong Yang, et al.

    The first case of Corona Virus Disease 2019 (COVID-19) was reported in Wuhan, China in December 2019. Since then, COVID-19 has quickly spread out to all provinces in China and over 150 countries or territories in the world. With the first level response to public health emergencies (FLRPHE) launched over the country, the outbreak of COVID-19 in China is achieving under control in China. We develop a mathematical model based on the epidemiology of COVID-19, incorporating the isolation of healthy people, confirmed cases and contact tracing measures. We calculate the basic reproduction numbers 2.5 in China (excluding Hubei province) and 2.9 in Hubei province with the initial time on January 30 which shows the severe infectivity of COVID-19, and verify that the current isolation method effectively contains the transmission of COVID-19. Under the isolation of healthy people, confirmed cases and contact tracing measures, we find a noteworthy phenomenon that is the second epidemic of COVID-19 and estimate the peak time and value and the cumulative number of cases. Simulations show that the contact tracing measures can efficiently contain the transmission of the second epidemic of COVID-19. With the isolation of all susceptible people or all infectious people or both, there is no second epidemic of COVID-19. Furthermore, resumption of work and study can increase the transmission risk of the second epidemic of COVID-19.


  • Modeling Rabies Transmission in Spatially Heterogeneous Environments via $\theta $-diffusion

    by Xiunan Wang, Hao Wang, Michael Y. Li

    Rabies among dogs remains a considerable risk to humans and constitutes a serious public health concern in many parts of the world. Conventional mathematical models for rabies typically assume homogeneous environments, with a standard diffusion term for the population of rabid animals. It has recently been recognized, however, that spatial heterogeneity plays an important role in determining spatial patterns of rabies and the cost-effectiveness of vaccinations. In this paper, we develop a spatially heterogeneous dog rabies model by using the \(\theta \)-diffusion equation, where \(\theta \) reflects the way individual dogs make movement decisions in the underlying random walk. We numerically investigate the dynamics of the model in three diffusion cases: homogeneous, city-wild, and Gaussian-type. We find that the initial conditions affect whether traveling waves or epizootic waves can be observed. However, different initial conditions have little impact on steady-state solutions. An “active” interface is observed between city and wild regions, with a “ridge” on the city side and a “valley” on the wild side for the infectious dog population. In addition, the progressing speed of epizootic waves changes in heterogeneous environments. It is impossible to eliminate rabies in the entire spatial domain if vaccination is focused only in the city region or only in the wild region. When a seasonal transmission is incorporated, the dog population size approaches a positive time-periodic spatially heterogeneous state eventually.


  • Open Access

    Nonpharmaceutical interventions contribute to the control of COVID-19 in China based on a pairwise model

    by Xiao-Feng Luo, Shanshan Feng, Junyuan Yang, Xiao-Long Peng, Xiaochun Cao, Juping Zhang, Meiping Yao, Huaiping Zhu, Michael Y. Li, Hao Wang, et al.

    Nonpharmaceutical interventions (NPIs), particularly contact tracing isolation and household quarantine, play a vital role in effectively bringing the Coronavirus Disease 2019 (COVID-19) under control in China. The pairwise model, has an inherent advantage in characterizing those two NPIs than the classical well-mixed models. Therefore, in this paper, we devised a pairwise epidemic model with NPIs to analyze COVID-19 outbreak in China by using confirmed cases during February 3rd–22nd, 2020. By explicitly incorporating contact tracing isolation and family clusters caused by household quarantine, our model provided a good fit to the trajectory of COVID-19 infections. We calculated the reproduction number R = 1.345 (95% CI: 1.230 − 1.460) for Hubei province and R = 1.217 (95% CI: 1.207 − 1.227) for China (except Hubei). We also estimated the peak time of infections, the epidemic duration and the final size, which are basically consistent with real observation. We indicated by simulation that the traced high-risk contacts from incubated to susceptible decrease under NPIs, regardless of infected cases. The sensitivity analysis showed that reducing the exposure of the susceptible and increasing the clustering coefficient bolster COVID-19 control. With the enforcement of household quarantine, the reproduction number R and the epidemic prevalence declined effectively. Furthermore, we obtained the resumption time of work and production in China (except Hubei) on 10th March and in Hubei at the end of April 2020, respectively, which is broadly in line with the actual time. Our results may provide some potential lessons from China on the control of COVID-19 for other parts of the world.


  • Open Access

    On the basic reproduction number in semi-Markov switching networks

    by Xiaochun Cao, Zhen Jin, Guirong Liu, Michael Y. Li

    Basic reproduction number R0 in network epidemic dynamics is studied in the case of stochastic regime-switching networks. For generality, the dependence between successive networks is considered to follow a continuous time semi-Markov chain. R0 is the weighted average of the basic reproduction numbers of deterministic subnetworks. Its position with respect to 1 can determine epidemic persistence or extinction in theories and simulations.


  • Viral dynamics of HIV-1 with CTL immune response

    by Aiping Wang, Michael Y. Li

    In this paper, we investigate an in-host model for the viral dynamics of HIV-1 infection and its interaction with the CTL immune response. The model is sufficiently general to allow nonlinear forms for both viral infection and CTL response. Threshold parameters are identified that completely determine the global dynamics and outcomes of the virus-target cell-CTL interactions. Impacts of key parameter values for CTL functions and viral budding rate on the HIV-1 viral load and CD4 count are investigated using numerical simulations. Results support clinical evidence for important differences between HIV-1 nonprogressors and progressors.


  • Open Access

    The Impact of Isolation on the Transmission of COVID-19 and Estimation of Potential Second Epidemic in China

    by Haitao Song, Fang Liu, Feng Li, Xiaochun Cao, Hao Wang, Zhongwei Jia, Huaiping Zhu, Michael Li, Wei Lin, Hong Yang, et al.

    The first case of Corona Virus Disease 2019 (COVID-19) was reported in Wuhan, China in December 2019. Since then, COVID-19 has quickly spread out to all provinces in China and over 150 countries or territories in the world. With the first level response to public health emergencies (FLRPHE) launched over the country, the outbreak of COVID-19 in China is achieving under control in China. We develop a mathematical model based on epidemiology of COVID-19, incorporating the isolation of healthy people, confirmed cases and close contacts. We calculate the basic reproduction numbers 2.5 in China (excluding Hubei province) and 2.9 in Hubei province with the initial time on January 30 which show the severe infectivity of COVID-19, and verify that the current isolation method effectively contains the transmission of COVID-19. Under the isolation of healthy people, confirmed cases and close contacts, we find a noteworthy phenomenon that is the potential second epidemic of COVID-19, and estimate the peak time and value and the cumulative number of cases. Simulations show that the isolation of close contacts tracked measure can efficiently contain the transmission of the potential second epidemic of COVID-19. With isolation of all susceptible people or all infected people or both, there is no potential second epidemic of COVID-19. Furthermore, resumption of work and study can increase the transmission risk of the potential second epidemic of COVID-19.


  • Open Access

    Analysis of Potential Risk of COVID-19 Infections in China Based on a Pairwise Epidemic Model

    by Xiaofeng Luo, Shanshan Feng, Junyuan Yang, Xiao-Long Peng, Xiaochun Cao, Juping Zhang, Meiping Yao, Huaiping Zhu, Michael Y. Li, Hao Wang, et al.

    The ongoing outbreak of the novel coronavirus pneumonia (also known as COVID-19) has triggered a series of stringent control measures in China, such as city closure, traffic restrictions, contact tracing and household quarantine. These containment efforts often lead to changes in the contact pattern among individuals of the population. Many existing compartmental epidemic models fail to account for the effects of contact structure. In this paper, we devised a pairwise epidemic model to analyze the COVID-19 outbreak in China based on confirmed cases reported during the period February 3rd--17th, 2020. By explicitly incorporating the effects of family clusters and contact tracing followed by household quarantine and isolation, our model provides a good fit to the trajectory of COVID-19 infections and is useful to predict the epidemic trend. We obtained the average of the reproduction number $R=1.494$ ($95\%$ CI: $1.483-1.507$) for Hubei province and $R=1.178$ ($95\%$ CI: $1.145-1.158$) for China (except Hubei), suggesting that some existing studies may have overestimated the reproduction number by neglecting the dynamical correlations and clustering effects. We forecasted that the COVID-19 epidemic would peak on February 13th ($95\%$ CI: February $9-17$th) in Hubei and 6 days eariler in the regions outside Hubei. Moreover the epidemic was expected to last until the middle of March in China (except Hubei) and late April in Hubei. The sensitivity analysis shows that ongoing exposure for the susceptible and population clustering play an important role in the disease propagation. With the enforcement of household quarantine measures, the reproduction number $R$ effectively reduces and epidemic quantities decrease accordingly. Furthermore, we gave an answer to the public concern on how long the stringent containment strategies should maintain. Through numerical analysis, we suggested that the time for the resumption of work and production in China (except Hubei) and Hubei would be the middle of March and the end of April, 2020, respectively. These constructive suggestions may bring some immeasurable social-economic benefits in the long run.


  • Top Cited Papers
    Open Access

    Why is it difficult to accurately predict the COVID-19 epidemic?

    by Weston C. Roda, Marie B. Varughese, Donglin Han, Michael Y. Li

    Since the COVID-19 outbreak in Wuhan City in December of 2019, numerous model predictions on the COVID-19 epidemics in Wuhan and other parts of China have been reported. These model predictions have shown a wide range of variations. In our study, we demonstrate that nonidentifiability in model calibrations using the confirmed-case data is the main reason for such wide variations. Using the Akaike Information Criterion (AIC) for model selection, we show that an SIR model performs much better than an SEIR model in representing the information contained in the confirmed-case data. This indicates that predictions using more complex models may not be more reliable compared to using a simpler model. We present our model predictions for the COVID-19 epidemic in Wuhan after the lockdown and quarantine of the city on January 23, 2020. We also report our results of modeling the impacts of the strict quarantine measures undertaken in the city after February 7 on the time course of the epidemic, and modeling the potential of a second outbreak after the return-to-work in the city.