Ke Zhou

Helical growth broadly exists in immobile plants to support their limited movement, and Arabidopsis seedling root exhibiting natural left-handedness helical growth is considered as a simplified model for investigating this interesting behavior. Efforts have been made for understanding the mechanism of root helical growth and consequent root waving and skewing on tilted and impenetrable surface, and several models have been established. Here, previous reports are reviewed and a straightforward torsions-driven mechanism has been emphasized, and additional experiments have been performed to fill up the gaps of this theory in our study. This study implies that, torsions originating from handedness of both cortical microtubules and cellulose microfibrils play central role in root handed helical growth. Different from torsions directly provided by handed assembled cortical microtubules, torsions originating from right-handed assembled cellulose microfibrils are relaxed by their cross-linking with pectin within cell wall, but only exhibited when their cross-linking is interrupted due to damaged cell wall integrity. To topologically relax these torsions, supercoils of cortical microtubules and/or cellulose microfibrils exhibiting as oblique alignments are formed in root cells, which alter the orientation of root cell files and generate handed helical roots. Working together with gravitropic response, relaxation of torsions originating from helical roots drives roots to elongate with handedness, which therefore produces waved and skewed roots on tilted and impenetrable surface.

Glycosylphosphatidylinositol-anchored proteins (GPI-APs) play crucial roles in various processes in eukaryotes. In Arabidopsis, SKS1, SKS2, SKS3 and SKU5 from SKU5/SKS gene family could encode GPI-anchored proteins, and they were recently reported to regulate cell polar expansion and cell wall synthesis redundantly in roots. Here, we report that, they are also redundantly crucial for seed production and seed morphogenesis in Arabidopsis through regulating maternal integument development. Their loss-of-functions resulted in disrupted development of integuments that failed to protect embryo sacs from exposure to external space due to physical restriction, and lead to female gametophytic abortion. Interestingly, those less defective ovules could be fertilized and develop into seeds normally, however, their seed morphogenesis was largely affected.Our research made SKS1, SKS2, SKS3 an SKU5 be not only the first class of GPI-anchored proteins that could regulate maternal integument development, but also the first class of proteins that could regulate cell polar expansion in both root and integument cells besides several MAPK cascade components. Our study also underlined the regulation by integument development in reproductive processes.

Diverse proteins are found modified with glycosylphosphatidylinositol (GPI) at their carboxyl terminus in eukaryotes, which allows them to associate with membrane lipid bilayers and anchor on the external surface of the plasma membrane. GPI-anchored proteins (GPI-APs) play crucial roles in various processes, and more and more GPI-APs have been identified and studied. In this review, previous genomic and proteomic predictions of GPI-APs in Arabidopsis have been updated, which reveal their high abundance and complexity. From studies of individual GPI-APs in Arabidopsis, certain GPI-APs have been found associated with partner receptor-like kinases (RLKs), targeting RLKs to their subcellular localization and helping to recognize extracellular signaling polypeptide ligands. Interestingly, the association might also be involved in ligand selection. The analyses suggest that GPI-APs are essential and widely involved in signal transduction through association with RLKs.

Alternative splicing largely enhanced the diversity of transcriptome and proteome in eukaryas. Along with technological development, more and more genes are reported to be alternatively spliced during mRNA maturation. Here, I report the alternative splicing of SKU5-Similar 3 (SKS3) and its special splicing site in Arabidopsis. SKS3 was predicted to be alternatively transcribed into two variants, SKS3.1 and SKS3.2, which encoded a GPI-anchored protein and a soluble secretory protein, respectively. But, according to experimental data, instead of SKS3.2, a novel variant, SKS3.3, which encodes a protein with a transmembrane region at its C-terminus, was demonstrated. Interestingly, it exhibites a different organ-specific expression pattern with SKS3.1, and an unusual intron splicing site not following ‘GT-AG’ rule or any reported rule.

Alternative splicing largely enhanced the diversity of transcriptome and proteome in eukaryas. Along with technical development, more and more alternatively splicing was demonstrated. Here, we report an unexpected alternative splicing of SKU5-Similar 3 ( SKS3 ) within a special splicing site in Arabidopsis . Based on bioinformatics database, SKS3 was predicted to be alternatively transcribed into two variants, SKS3.1 and SKS3.2 , which encoded a GPI-anchored protein and a soluble secretory protein respectively. But, instead of SKS3.2 , a novel variant, SKS3.3 , which encoded a protein with transmembrane region at its C-terminus, was demonstrated based on our experimental data. Interestingly, it exhibited a different organ-specific expression pattern from SKS3.1 , and its intron splicing site did not follow ‘GT-AG’ rule or any reported rules.