Christin Seifert
Christin Seifert has a total of 175 co-authors. Here are the top co-authors by number of shared publications:
- Michael Granitzer
University of Passau, Passau, Germany
35 shared publications - Jörg Schlötterer
Philipps-Universität Marburg, Marburg, Germany
34 shared publications - Jeroen Geerdink
Hospital Group Twente (ZGT)
12 shared publications - Meike Nauta
University of Twente
11 shared publications - Shreyasi Pathak
University of Twente, netherlands
10 shared publications - Maurice van Keulen
Faculty of Electrical Engineering, Mathematics and Computer Science, University of Twente, 7522 NB Enschede, The Netherlands
9 shared publications
Latest Publications
- Open Access
- 8 August 2026
- Published by Association for Computing Machinery (ACM)
- p. 604-615
Can Fine-Tuning Erase Edits? On the Fragile Coexistence of Knowledge Editing and Fine-tuning
Knowledge editing (KE) offers a lightweight alternative to retraining for updating large language models (LLMs). Meanwhile, fine-tuning remains the default operation for adapting LLMs to new domains and tasks. Despite their widespread adoption, these two post-training interventions have been studied in isolation, leaving open a crucial question: if we fine-tune an edited model, do the edits survive? This question is motivated by practical objectives: removing covert or malicious edits, and preserving beneficial edits. If fine-tuning impairs edits (Fig.1), current KE methods become less efficient, as a newly fine-tuned model requires re-editing; if edits persist, fine-tuned models risk propagating hidden malicious edits, raising serious safety concerns. To this end, we systematically quantify edit decay after fine-tuning across 254 experimental configurations. Our results show that in general, edits decay substantially after subsequent fine-tuning. AlphaEdit exhibits the greatest decay on the zsRE benchmark when applied to GPT-J, where 25.27% of previously successful edits become unsuccessful after fine-tuning. We further find that fine-tuning only the edited layers is sufficient to effectively remove edits, while incurring only modest degradation in downstream performance. Surprisingly, fine-tuning non-edited layers leads to greater edit decay than all-layer fine-tuning. Besides, our activation space analysis reveals that fine-tuning produces a larger and more coherent representational shift, both in magnitude and direction, than KE. Overall, our study underscores the necessity of evaluating KE within the broader LLM application pipeline. Our code and results are available at https://github.com/Cheng-Yinjie/edit_decay_KDD.
- 8 August 2026
- Published by Association for Computing Machinery (ACM)
- p. 604-615
Open AccessCan Fine-Tuning Erase Edits? On the Fragile Coexistence of Knowledge Editing and Fine-tuning
Knowledge editing (KE) offers a lightweight alternative to retraining for updating large language models (LLMs). Meanwhile, fine-tuning remains the default operation for adapting LLMs to new domains and tasks. Despite their widespread adoption, these two post-training interventions have been studied in isolation, leaving open a crucial question: if we fine-tune an edited model, do the edits survive? This question is motivated by practical objectives: removing covert or malicious edits, and preserving beneficial edits. If fine-tuning impairs edits (Fig.1), current KE methods become less efficient, as a newly fine-tuned model requires re-editing; if edits persist, fine-tuned models risk propagating hidden malicious edits, raising serious safety concerns. To this end, we systematically quantify edit decay after fine-tuning across 254 experimental configurations. Our results show that in general, edits decay substantially after subsequent fine-tuning. AlphaEdit exhibits the greatest decay on the zsRE benchmark when applied to GPT-J, where 25.27% of previously successful edits become unsuccessful after fine-tuning. We further find that fine-tuning only the edited layers is sufficient to effectively remove edits, while incurring only modest degradation in downstream performance. Surprisingly, fine-tuning non-edited layers leads to greater edit decay than all-layer fine-tuning. Besides, our activation space analysis reveals that fine-tuning produces a larger and more coherent representational shift, both in magnitude and direction, than KE. Overall, our study underscores the necessity of evaluating KE within the broader LLM application pipeline. Our code and results are available at https://github.com/Cheng-Yinjie/edit_decay_KDD.
- Open Access
Persuasion Tokens for Editing Factual Knowledge in LLMs
In-context knowledge editing (IKE) is a promising technique for updating Large Language Models (LLMs) with new information. However, IKE relies on lengthy, fact-specific demonstrations which are costly to create and consume significant context window space. In this paper, we introduce persuasion tokens (P-Tokens) -- special tokens trained to replicate the effect of IKE demonstrations, enabling efficient knowledge editing without requiring fact-specific demonstrations. We evaluate P-Tokens across two editing datasets and three LLMs, demonstrating performance comparable to, and often exceeding, IKE. We further find that editing performance is robust to distractors with small negative effects to neighboring facts, and that increasing the number of P-Tokens improves performance. Our work addresses key limitations of IKE and provides a more practical and scalable alternative for editing LLMs.
Open AccessPersuasion Tokens for Editing Factual Knowledge in LLMs
In-context knowledge editing (IKE) is a promising technique for updating Large Language Models (LLMs) with new information. However, IKE relies on lengthy, fact-specific demonstrations which are costly to create and consume significant context window space. In this paper, we introduce persuasion tokens (P-Tokens) -- special tokens trained to replicate the effect of IKE demonstrations, enabling efficient knowledge editing without requiring fact-specific demonstrations. We evaluate P-Tokens across two editing datasets and three LLMs, demonstrating performance comparable to, and often exceeding, IKE. We further find that editing performance is robust to distractors with small negative effects to neighboring facts, and that increasing the number of P-Tokens improves performance. Our work addresses key limitations of IKE and provides a more practical and scalable alternative for editing LLMs.
- Open Access
- 16 October 2025
- Published by Springer Nature
- p. 53-77
Explainable Bayesian Optimization
Manual parameter tuning of cyber-physical systems is a common practice, but it is labor-intensive. Bayesian Optimization (BO) offers an automated alternative, yet its black-box nature reduces trust and limits human-BO collaborative system tuning. Experts struggle to interpret BO recommendations due to the lack of explanations. This paper addresses the post-hoc BO explainability problem for cyber-physical systems. We introduce TNTRules (Tune-No-Tune Rules), a novel algorithm that provides both global and local explanations for BO recommendations. TNTRules generates actionable rules and visual graphs, identifying optimal solution bounds and ranges, as well as potential alternative solutions. Unlike existing explainable AI (XAI) methods, TNTRules is tailored specifically for BO, by encoding uncertainty via a variance pruning technique and hierarchical agglomerative clustering. A multi-objective optimization approach allows maximizing explanation quality. We evaluate TNTRules using established XAI metrics (Correctness, Completeness, and Compactness) and compare it against adapted baseline methods. The results demonstrate that TNTRules generates high-fidelity, compact, and complete explanations, significantly outperforming three baselines on 5 multi-objective testing functions and 2 hyperparameter tuning problems.
- 16 October 2025
- Published by Springer Nature
- p. 53-77
Open AccessExplainable Bayesian Optimization
Manual parameter tuning of cyber-physical systems is a common practice, but it is labor-intensive. Bayesian Optimization (BO) offers an automated alternative, yet its black-box nature reduces trust and limits human-BO collaborative system tuning. Experts struggle to interpret BO recommendations due to the lack of explanations. This paper addresses the post-hoc BO explainability problem for cyber-physical systems. We introduce TNTRules (Tune-No-Tune Rules), a novel algorithm that provides both global and local explanations for BO recommendations. TNTRules generates actionable rules and visual graphs, identifying optimal solution bounds and ranges, as well as potential alternative solutions. Unlike existing explainable AI (XAI) methods, TNTRules is tailored specifically for BO, by encoding uncertainty via a variance pruning technique and hierarchical agglomerative clustering. A multi-objective optimization approach allows maximizing explanation quality. We evaluate TNTRules using established XAI metrics (Correctness, Completeness, and Compactness) and compare it against adapted baseline methods. The results demonstrate that TNTRules generates high-fidelity, compact, and complete explanations, significantly outperforming three baselines on 5 multi-objective testing functions and 2 hyperparameter tuning problems.
- Open Access
- 14 October 2025
- Published by Springer Nature
- p. 158-176
Guiding LLMs to Generate High-Fidelity and High-Quality Counterfactual Explanations for Text Classification
The need for interpretability in deep learning has driven interest in counterfactual explanations, which identify minimal changes to an instance that change a model’s prediction. Current counterfactual (CF) generation methods require task-specific fine-tuning and produce low-quality text. Large Language Models (LLMs), though effective for high-quality text generation, struggle with label-flipping counterfactuals (i.e., counterfactuals that change the prediction) without fine-tuning. We introduce two simple classifier-guided approaches to support counterfactual generation by LLMs, eliminating the need for fine-tuning while preserving the strengths of LLMs. Despite their simplicity, our methods outperform state-of-the-art counterfactual generation methods and are effective across different LLMs, highlighting the benefits of guiding counterfactual generation by LLMs with classifier information. We further show that data augmentation by our generated CFs can improve a classifier’s robustness. Our analysis reveals a critical issue in counterfactual generation by LLMs: LLMs rely on parametric knowledge rather than faithfully following the classifier.
- 14 October 2025
- Published by Springer Nature
- p. 158-176
Open AccessGuiding LLMs to Generate High-Fidelity and High-Quality Counterfactual Explanations for Text Classification
The need for interpretability in deep learning has driven interest in counterfactual explanations, which identify minimal changes to an instance that change a model’s prediction. Current counterfactual (CF) generation methods require task-specific fine-tuning and produce low-quality text. Large Language Models (LLMs), though effective for high-quality text generation, struggle with label-flipping counterfactuals (i.e., counterfactuals that change the prediction) without fine-tuning. We introduce two simple classifier-guided approaches to support counterfactual generation by LLMs, eliminating the need for fine-tuning while preserving the strengths of LLMs. Despite their simplicity, our methods outperform state-of-the-art counterfactual generation methods and are effective across different LLMs, highlighting the benefits of guiding counterfactual generation by LLMs with classifier information. We further show that data augmentation by our generated CFs can improve a classifier’s robustness. Our analysis reveals a critical issue in counterfactual generation by LLMs: LLMs rely on parametric knowledge rather than faithfully following the classifier.
- Open Access
- 12 October 2025
- Published by Springer Nature
- p. 139-161
Comparative Explanations: Explanation Guided Decision Making for Human-in-the-Loop Preference Selection
This paper introduces Multi-Output LOcal Narrative Explanation (MOLONE), a novel comparative explanation method designed to enhance preference selection in human-in-the-loop Preference Bayesian optimization (PBO). The preference elicitation in PBO is a non-trivial task because it involves navigating implicit trade-offs between vector-valued outcomes, subjective priorities of decision-makers, and decision-makers’ uncertainty in preference selection. Existing explainable AI (XAI) methods for BO primarily focus on input feature importance, neglecting the crucial role of outputs (objectives) in human preference elicitation. MOLONE addresses this gap by providing explanations that highlight both input and output importance, enabling decision-makers to understand the trade-offs between competing objectives and make more informed preference selections. MOLONE focuses on local explanations, comparing the importance of input features and outcomes across candidate samples within a local neighborhood of the search space, thus capturing nuanced differences relevant to preference-based decision-making. We evaluate MOLONE within a PBO framework using benchmark multi-objective optimization functions, demonstrating its effectiveness in improving convergence compared to noisy preference selections. Furthermore, a user study confirms that MOLONE significantly accelerates convergence in human-in-the-loop scenarios by facilitating more efficient identification of preferred options.
- 12 October 2025
- Published by Springer Nature
- p. 139-161
Open AccessComparative Explanations: Explanation Guided Decision Making for Human-in-the-Loop Preference Selection
This paper introduces Multi-Output LOcal Narrative Explanation (MOLONE), a novel comparative explanation method designed to enhance preference selection in human-in-the-loop Preference Bayesian optimization (PBO). The preference elicitation in PBO is a non-trivial task because it involves navigating implicit trade-offs between vector-valued outcomes, subjective priorities of decision-makers, and decision-makers’ uncertainty in preference selection. Existing explainable AI (XAI) methods for BO primarily focus on input feature importance, neglecting the crucial role of outputs (objectives) in human preference elicitation. MOLONE addresses this gap by providing explanations that highlight both input and output importance, enabling decision-makers to understand the trade-offs between competing objectives and make more informed preference selections. MOLONE focuses on local explanations, comparing the importance of input features and outcomes across candidate samples within a local neighborhood of the search space, thus capturing nuanced differences relevant to preference-based decision-making. We evaluate MOLONE within a PBO framework using benchmark multi-objective optimization functions, demonstrating its effectiveness in improving convergence compared to noisy preference selections. Furthermore, a user study confirms that MOLONE significantly accelerates convergence in human-in-the-loop scenarios by facilitating more efficient identification of preferred options.
- Open Access
- 12 October 2025
- Published by Springer Nature
- p. 424-445
An XAI-Based Analysis of Shortcut Learning in Neural Networks
Machine learning models tend to learn spurious features – features that strongly correlate with target labels but are not causal. Existing approaches to mitigate models’ dependence on spurious features work in some cases, but fail in others. In this paper, we systematically analyze how and where neural networks encode spurious correlations. We introduce the neuron spurious score, an XAI-based diagnostic measure to quantify a neuron’s dependence on spurious features. We analyze both convolutional neural networks (CNNs) and vision transformers (ViTs) using architecture-specific methods. Our results show that spurious features are partially disentangled, but the degree of disentanglement varies across model architectures. Furthermore, we find that the assumptions behind existing mitigation methods are incomplete. Our results lay the groundwork for the development of novel methods to mitigate spurious correlations and make AI models safer to use in practice.
- 12 October 2025
- Published by Springer Nature
- p. 424-445
Open AccessAn XAI-Based Analysis of Shortcut Learning in Neural Networks
Machine learning models tend to learn spurious features – features that strongly correlate with target labels but are not causal. Existing approaches to mitigate models’ dependence on spurious features work in some cases, but fail in others. In this paper, we systematically analyze how and where neural networks encode spurious correlations. We introduce the neuron spurious score, an XAI-based diagnostic measure to quantify a neuron’s dependence on spurious features. We analyze both convolutional neural networks (CNNs) and vision transformers (ViTs) using architecture-specific methods. Our results show that spurious features are partially disentangled, but the degree of disentanglement varies across model architectures. Furthermore, we find that the assumptions behind existing mitigation methods are incomplete. Our results lay the groundwork for the development of novel methods to mitigate spurious correlations and make AI models safer to use in practice.
- Open Access
- 4 October 2025
- Published by Elsevier in Computers in Biology and Medicine
- Vol. 198 (Pt A) , 111136
Breast cancer prediction using mammography exams for real hospital settings
- 4 October 2025
- Published by Elsevier in Computers in Biology and Medicine
- Vol. 198 (Pt A) , 111136
Open AccessBreast cancer prediction using mammography exams for real hospital settings
- Open Access
Explanation format does not matter; but explanations do -- An Eggsbert study on explaining Bayesian Optimisation tasks
Bayesian Optimisation (BO) is a family of methods for finding optimal parameters when the underlying function to be optimised is unknown. BO is used, for example, for hyperparameter tuning in machine learning and as an expert support tool for tuning cyberphysical systems. For settings where humans are involved in the tuning task, methods have been developed to explain BO (Explainable Bayesian Optimization, XBO). However, there is little guidance on how to present XBO results to humans so that they can tune the system effectively and efficiently. In this paper, we investigate how the XBO explanation format affects users' task performance, task load, understanding and trust in XBO. We chose a task that is accessible to a wide range of users. Specifically, we set up an egg cooking scenario with 6 parameters that participants had to adjust to achieve a perfect soft-boiled egg. We compared three different explanation formats: a bar chart, a list of rules and a textual explanation in a between-subjects online study with 213 participants. Our results show that adding any type of explanation increases task success, reduces the number of trials needed to achieve success, and improves comprehension and confidence. While explanations add more information for participants to process, we found no increase in user task load. We also found that the aforementioned results were independent of the explanation format; all formats had a similar effect. This is an interesting finding for practical applications, as it suggests that explanations can be added to BO tuning tasks without the burden of designing or selecting specific explanation formats. In the future, it would be interesting to investigate scenarios of prolonged use of the explanation formats and whether they have different effects on users' mental models of the underlying system.
Open AccessExplanation format does not matter; but explanations do -- An Eggsbert study on explaining Bayesian Optimisation tasks
Bayesian Optimisation (BO) is a family of methods for finding optimal parameters when the underlying function to be optimised is unknown. BO is used, for example, for hyperparameter tuning in machine learning and as an expert support tool for tuning cyberphysical systems. For settings where humans are involved in the tuning task, methods have been developed to explain BO (Explainable Bayesian Optimization, XBO). However, there is little guidance on how to present XBO results to humans so that they can tune the system effectively and efficiently. In this paper, we investigate how the XBO explanation format affects users' task performance, task load, understanding and trust in XBO. We chose a task that is accessible to a wide range of users. Specifically, we set up an egg cooking scenario with 6 parameters that participants had to adjust to achieve a perfect soft-boiled egg. We compared three different explanation formats: a bar chart, a list of rules and a textual explanation in a between-subjects online study with 213 participants. Our results show that adding any type of explanation increases task success, reduces the number of trials needed to achieve success, and improves comprehension and confidence. While explanations add more information for participants to process, we found no increase in user task load. We also found that the aforementioned results were independent of the explanation format; all formats had a similar effect. This is an interesting finding for practical applications, as it suggests that explanations can be added to BO tuning tasks without the burden of designing or selecting specific explanation formats. In the future, it would be interesting to investigate scenarios of prolonged use of the explanation formats and whether they have different effects on users' mental models of the underlying system.
- Open Access
Invariant Learning with Annotation-free Environments
Invariant learning is a promising approach to improve domain generalization compared to Empirical Risk Minimization (ERM). However, most invariant learning methods rely on the assumption that training examples are pre-partitioned into different known environments. We instead infer environments without the need for additional annotations, motivated by observations of the properties within the representation space of a trained ERM model. We show the preliminary effectiveness of our approach on the ColoredMNIST benchmark, achieving performance comparable to methods requiring explicit environment labels and on par with an annotation-free method that poses strong restrictions on the ERM reference model.
Open AccessInvariant Learning with Annotation-free Environments
Invariant learning is a promising approach to improve domain generalization compared to Empirical Risk Minimization (ERM). However, most invariant learning methods rely on the assumption that training examples are pre-partitioned into different known environments. We instead infer environments without the need for additional annotations, motivated by observations of the properties within the representation space of a trained ERM model. We show the preliminary effectiveness of our approach on the ColoredMNIST benchmark, achieving performance comparable to methods requiring explicit environment labels and on par with an annotation-free method that poses strong restrictions on the ERM reference model.