Anil Kumar
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Anil Kumar has a total of 288 co-authors. Here are the top co-authors by number of shared publications:
Raja Biswas
Amrita School of Nanosciences and Molecular medicine, Amrita Vishwa Vidyapeetham, Ponekkara, Kochi, India
10 shared publicationsShamsul Karim
Department of Microbiology, Amrita Institute of Medical Sciences, Amrita Vishwa Vidyapeetham University, Kochi, Kerala, India
10 shared publications- Lalitha Biswas
Amrita School of Nanosciences and Molecular Medicine Amrita Vishwa Vidyapeetham Kochi Kerala India
7 shared publications - Raja Biswas
Centre for Nanosciences and Molecular Medicine, Amrita Vishwa Vidyapeetham, Kochi, 682041, Kerala, India
7 shared publications Kavitha R. Dinesh
6 shared publicationsLalitha Biswas
Department of Nanosciences and Molecular Medicine, Amrita Institute of Medical Sciences and Research Center, Amrita Vishwa Vidyapeetham, Kochi, Kerala, India
6 shared publications
Latest Publications
- Open Access
- 30 October 2026
- Published by American Society for Microbiology in Journal of Clinical Microbiology
Performance of mCIM/eCIM in Enterobacterales strains co-encoding NDM and OXA-48-like carbapenemases from South India
Carbapenem-resistant Enterobacterales (CRE) are an increasing public health concern, particularly as carbapenemase-producing isolates, such as NDM and OXA-48-like producers, become more prevalent. Rapid and accurate identification of carbapenemases is crucial to guide appropriate antibiotic therapy. Although recent epidemiologic data show that CRE increasingly harbor multiple carbapenemases, the performance of common phenotypic tests—the modified carbapenem inactivation method (mCIM) and EDTA-modified CIM (eCIM)—has not been well defined in these isolates. We examined the performance of mCIM and eCIM among CRE-encoding NDM, OXA-48-like, or both. We included 172 genotypically confirmed carbapenemase-encoding CRE isolates from perirectal swabs collected from patients admitted to two intensive care units at a hospital in South India. Isolates included Escherichia coli (53.5%), Klebsiella pneumoniae (41.3%), and Enterobacter species (5.3%). Overall, 112 isolates (65.1%) encoded NDM alone, 23 (13.4%) encoded OXA-48-like alone, and 37 (21.5%) encoded both NDM and OXA-48-like. mCIM positivity was 98.2% for NDM, 47.8% for OXA-48-like, and 94.6% for NDM+OXA-48-like encoders; among mCIM-positive isolates, eCIM positivity rates were 99.1%, 91%, and 97.1%, respectively. When compared to molecular carbapenemase gene detection, mCIM/eCIM was highly sensitive for classifying isolates encoding NDM as metallo-β-lactamase (MBL) producers, but significantly misclassified isolates encoding OXA-48-like as having an MBL or lacking a carbapenemase. In the largest collection of NDM and OXA-48-like co-encoding CRE isolates to date, mCIM/eCIM typically reported these as MBL producers. IMPORTANCE: Carbapenemase-encoding Enterobacterales infections are associated with substantial adverse health outcomes, making rapid and accurate carbapenemase detection essential for guiding antibiotic therapy. Although Enterobacterales carrying multiple carbapenemases are increasingly reported worldwide, the performance of common phenotypic assays, mCIM and eCIM, remains insufficiently defined for these strains. In this study of 172 genotypically confirmed carbapenemase-encoding Enterobacterales isolates from hospitalized patients in South India, mCIM/eCIM consistently classified NDM-encoding isolates as metallo-β-lactamase encoders. Additionally, mCIM/eCIM frequently misclassified OXA-48-like-encoding isolates as either metallo-β-lactamase encoders or carbapenemase-negative, highlighting the need to better understand the mechanisms underlying this variable activity. In the largest collection of NDM and OXA co-encoding Enterobacterales isolates reported to date, mCIM/eCIM generally reported co-encoding isolates as metallo-β-lactamase producers. Our results suggest that mCIM/eCIM performance may vary geographically due to variable activity, distribution, and combinations of carbapenemases.
- 30 October 2026
- Published by American Society for Microbiology in Journal of Clinical Microbiology
Open AccessPerformance of mCIM/eCIM in Enterobacterales strains co-encoding NDM and OXA-48-like carbapenemases from South India
Carbapenem-resistant Enterobacterales (CRE) are an increasing public health concern, particularly as carbapenemase-producing isolates, such as NDM and OXA-48-like producers, become more prevalent. Rapid and accurate identification of carbapenemases is crucial to guide appropriate antibiotic therapy. Although recent epidemiologic data show that CRE increasingly harbor multiple carbapenemases, the performance of common phenotypic tests—the modified carbapenem inactivation method (mCIM) and EDTA-modified CIM (eCIM)—has not been well defined in these isolates. We examined the performance of mCIM and eCIM among CRE-encoding NDM, OXA-48-like, or both. We included 172 genotypically confirmed carbapenemase-encoding CRE isolates from perirectal swabs collected from patients admitted to two intensive care units at a hospital in South India. Isolates included Escherichia coli (53.5%), Klebsiella pneumoniae (41.3%), and Enterobacter species (5.3%). Overall, 112 isolates (65.1%) encoded NDM alone, 23 (13.4%) encoded OXA-48-like alone, and 37 (21.5%) encoded both NDM and OXA-48-like. mCIM positivity was 98.2% for NDM, 47.8% for OXA-48-like, and 94.6% for NDM+OXA-48-like encoders; among mCIM-positive isolates, eCIM positivity rates were 99.1%, 91%, and 97.1%, respectively. When compared to molecular carbapenemase gene detection, mCIM/eCIM was highly sensitive for classifying isolates encoding NDM as metallo-β-lactamase (MBL) producers, but significantly misclassified isolates encoding OXA-48-like as having an MBL or lacking a carbapenemase. In the largest collection of NDM and OXA-48-like co-encoding CRE isolates to date, mCIM/eCIM typically reported these as MBL producers. IMPORTANCE: Carbapenemase-encoding Enterobacterales infections are associated with substantial adverse health outcomes, making rapid and accurate carbapenemase detection essential for guiding antibiotic therapy. Although Enterobacterales carrying multiple carbapenemases are increasingly reported worldwide, the performance of common phenotypic assays, mCIM and eCIM, remains insufficiently defined for these strains. In this study of 172 genotypically confirmed carbapenemase-encoding Enterobacterales isolates from hospitalized patients in South India, mCIM/eCIM consistently classified NDM-encoding isolates as metallo-β-lactamase encoders. Additionally, mCIM/eCIM frequently misclassified OXA-48-like-encoding isolates as either metallo-β-lactamase encoders or carbapenemase-negative, highlighting the need to better understand the mechanisms underlying this variable activity. In the largest collection of NDM and OXA co-encoding Enterobacterales isolates reported to date, mCIM/eCIM generally reported co-encoding isolates as metallo-β-lactamase producers. Our results suggest that mCIM/eCIM performance may vary geographically due to variable activity, distribution, and combinations of carbapenemases.
- Open Access
- 1 October 2026
- Published by Springer Nature in BMC Infectious Diseases
Molecular characterization of Mycobacterium tuberculosis complex isolates at a tertiary care centre in Kerala, India
- 1 October 2026
- Published by Springer Nature in BMC Infectious Diseases
Open AccessMolecular characterization of Mycobacterium tuberculosis complex isolates at a tertiary care centre in Kerala, India
- Open Access
- 18 August 2026
- Published by Springer Nature in BMC Infectious Diseases
Neurolisteriosis in adults: a case series highlighting clinical and diagnostic challenges and review of Indian literature
Background: Neurolisteriosis due to Listeria monocytogenes is uncommon but associated with high morbidity and mortality. Diagnosis is often delayed due to heterogeneous clinical presentations, overlap with non-infectious neurological conditions and limited sensitivity of early diagnostic tests. Methods: We conducted a single centre retrospective chart review at a tertiary care teaching hospital between January 2024 to March 2026. Adult patients (≥ 18 years) with microbiologically confirmed neurolisteriosis cases were included. Clinical, radiological, microbiological, treatment, and outcome data were analysed descriptively. Results: Of the 1633 CSF samples analysed, 110 (6.7%) were positive for bacterial meningitis, of which 3 (2.7%) were due to Listeria monocytogenes . The median age of patient was 57 years (range: 30–69) with female predominance. One patient had SLE on immunosuppressive therapy while other two were immunocompetent. The median symptoms duration prior to admission was 1 day with common presenting symptoms headache, fever and altered sensorium. Imaging demonstrated hyperintense meningeal or parenchymal enhancement. CSF revealed neutrophilic pleocytosis, elevated protein, and low glucose. CSF and blood cultures were positive in all cases. Delayed appropriate therapy led to deterioration, but targeted ampicillin-based treatment resulted in favourable outcomes. Conclusions: Neurolisteriosis remains a significant diagnostic challenge due to its variable clinical presentation; therefore, maintaining a high index of suspicion and ensuring early recognition with prompt initiation of ampicillin-based therapy are essential for improving patient outcomes.
- 18 August 2026
- Published by Springer Nature in BMC Infectious Diseases
Open AccessNeurolisteriosis in adults: a case series highlighting clinical and diagnostic challenges and review of Indian literature
Background: Neurolisteriosis due to Listeria monocytogenes is uncommon but associated with high morbidity and mortality. Diagnosis is often delayed due to heterogeneous clinical presentations, overlap with non-infectious neurological conditions and limited sensitivity of early diagnostic tests. Methods: We conducted a single centre retrospective chart review at a tertiary care teaching hospital between January 2024 to March 2026. Adult patients (≥ 18 years) with microbiologically confirmed neurolisteriosis cases were included. Clinical, radiological, microbiological, treatment, and outcome data were analysed descriptively. Results: Of the 1633 CSF samples analysed, 110 (6.7%) were positive for bacterial meningitis, of which 3 (2.7%) were due to Listeria monocytogenes . The median age of patient was 57 years (range: 30–69) with female predominance. One patient had SLE on immunosuppressive therapy while other two were immunocompetent. The median symptoms duration prior to admission was 1 day with common presenting symptoms headache, fever and altered sensorium. Imaging demonstrated hyperintense meningeal or parenchymal enhancement. CSF revealed neutrophilic pleocytosis, elevated protein, and low glucose. CSF and blood cultures were positive in all cases. Delayed appropriate therapy led to deterioration, but targeted ampicillin-based treatment resulted in favourable outcomes. Conclusions: Neurolisteriosis remains a significant diagnostic challenge due to its variable clinical presentation; therefore, maintaining a high index of suspicion and ensuring early recognition with prompt initiation of ampicillin-based therapy are essential for improving patient outcomes.
- 9 February 2026
- Published by Oxford University Press (OUP) in QJM: An International Journal of Medicine
- Vol. 119 (6) , 500-501
Neuroangiostrongyliasis after consumption of the monitor lizard
- 9 February 2026
- Published by Oxford University Press (OUP) in QJM: An International Journal of Medicine
- Vol. 119 (6) , 500-501
Neuroangiostrongyliasis after consumption of the monitor lizard
- 3 February 2026
- Published by BMJ in BMJ Case Reports
- Vol. 19 (2) , e266835
Mycobacterium lentiflavum complicating insulin injection sites
Non-tuberculous mycobacteria (NTM)/atypical mycobacteria are opportunistic pathogens ubiquitous in the environment. Recently, NTM cases causing skin and soft tissue infections are on the rise, owing to the improved diagnostic techniques as well as heightened number of procedures. A man in the mid 60s with diabetes, on insulin for the past 20 years, presented with multiple painful swellings, a few of them with pus discharge, over the insulin injection sites of arms, abdomen and thighs for the past 10 months. Local ultrasonography revealed anechoic collections surrounding increased vascularity in the subcutaneous planes. Histopathology showed suppurative inflammation with a large area of necrosis in the lower dermis and subcutaneous fat. Acid-fast bacilli culture grew NTM and was identified as Mycobacterium lentiflavum by PCR followed by Sanger sequencing of the 16S–23S intergenic spacer region. The lesions dramatically improved with clarithromycin and ofloxacin, which were continued for a total of 5 months.
- 3 February 2026
- Published by BMJ in BMJ Case Reports
- Vol. 19 (2) , e266835
Mycobacterium lentiflavum complicating insulin injection sites
Non-tuberculous mycobacteria (NTM)/atypical mycobacteria are opportunistic pathogens ubiquitous in the environment. Recently, NTM cases causing skin and soft tissue infections are on the rise, owing to the improved diagnostic techniques as well as heightened number of procedures. A man in the mid 60s with diabetes, on insulin for the past 20 years, presented with multiple painful swellings, a few of them with pus discharge, over the insulin injection sites of arms, abdomen and thighs for the past 10 months. Local ultrasonography revealed anechoic collections surrounding increased vascularity in the subcutaneous planes. Histopathology showed suppurative inflammation with a large area of necrosis in the lower dermis and subcutaneous fat. Acid-fast bacilli culture grew NTM and was identified as Mycobacterium lentiflavum by PCR followed by Sanger sequencing of the 16S–23S intergenic spacer region. The lesions dramatically improved with clarithromycin and ofloxacin, which were continued for a total of 5 months.
- Open Access
- 25 November 2025
- Published by Springer Nature in BMC Genomics
- Vol. 26 (1)
Genomic characterization of an environmental Burkholderia thailandensis strain from Kerala, India reveals virulence and antimicrobial resistance signatures
Burkholderia thailandensis is an environmental Gram-negative bacterium closely related to the highly pathogenic B. pseudomallei, the causative agent of mel
- 25 November 2025
- Published by Springer Nature in BMC Genomics
- Vol. 26 (1)
Open AccessGenomic characterization of an environmental Burkholderia thailandensis strain from Kerala, India reveals virulence and antimicrobial resistance signatures
Burkholderia thailandensis is an environmental Gram-negative bacterium closely related to the highly pathogenic B. pseudomallei, the causative agent of mel
- 25 July 2025
- Published by Elsevier in Indian Journal of Medical Microbiology
- Vol. 57, 100941
Early prosthetic valve endocarditis due to Kytococcus schroeteri – A case report and review of literature
- 25 July 2025
- Published by Elsevier in Indian Journal of Medical Microbiology
- Vol. 57, 100941
Early prosthetic valve endocarditis due to Kytococcus schroeteri – A case report and review of literature
- 14 June 2025
- Published by Elsevier in Indian Journal of Medical Microbiology
- Vol. 56, 100893
Accelerating pneumococcal protection in India: The case for rapid adoption of PCV20 across pediatric and adult populations
- 14 June 2025
- Published by Elsevier in Indian Journal of Medical Microbiology
- Vol. 56, 100893
Accelerating pneumococcal protection in India: The case for rapid adoption of PCV20 across pediatric and adult populations
- 28 April 2025
- Published by Elsevier in Indian Journal of Medical Microbiology
- Vol. 55, 100867
Schistosoma haematobium infection in a traveller returning from an endemic country
- 28 April 2025
- Published by Elsevier in Indian Journal of Medical Microbiology
- Vol. 55, 100867
Schistosoma haematobium infection in a traveller returning from an endemic country
- 23 April 2025
- Published by Elsevier in Indian Journal of Medical Microbiology
- Vol. 55, 100864
Filamentous forms of Gram-negative bacteria on microscopy: Report of a case and review of literature
- 23 April 2025
- Published by Elsevier in Indian Journal of Medical Microbiology
- Vol. 55, 100864
Filamentous forms of Gram-negative bacteria on microscopy: Report of a case and review of literature