Kazuya Kobayashi
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Kazuya Kobayashi has a total of 125 co-authors. Here are the top co-authors by number of shared publications:
Motonori Hoshi
Department of Biosciences and Informatics, Keio University, 3-14-1 Hiyoshi, Kouhoku-ku, Yokohama 223-8522, Japan
15 shared publicationsMidori Matsumoto
Department of Biosciences and Informatics, Keio University, Yokohama, Japan
13 shared publicationsTakanobu Maezawa
Advanced Science Course, Department of Integrated Science and Technology, National Institute of Technology, Tsuyama College, 624-1 Numa, Tsuyama, Okayama 708-8509, Japan
10 shared publicationsKiyono Sekii
Affiliations Department of Biology, Faculty of Agriculture and Life Science, Hirosaki University, Hirosaki, Aomori, Japan, Faculty of Business and Commerce, Keio University, Yokohama, Kanagawa, Japan
9 shared publicationsHaruka Nakagawa
Department of Biology, Faculty of Agriculture and Life Science, Hirosaki University, Aomori, Japan
6 shared publicationsHikaru Okamoto
Department of Biology, Faculty of Agriculture and Life Science, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori 036-8561, Japan
5 shared publications
Latest Publications
- Open Access
- 16 March 2026
- Published by Public Library of Science (PLoS) in PLOS Neglected Tropical Diseases
- Vol. 20 (3) , e0014113
Fraction of sex-inducing substances facilitates growth and body shape change in a Fasciola hepatica/gigantica hybrid: A novel in vitro research platform for studying liver-stage juveniles derived from mice
The absence of an established in vitro platform is a major obstacle in research on parasitic flatworms, including Fasciola flukes. Fasciola flukes cause zoonotic infections that primarily affect the liver and the bile ducts. Infected juveniles can cause severe liver damage in animals, occasionally leading to sudden death. Although resistance to the only drug for the acute liver stage has been reported worldwide, the search for new drugs has been unsuccessful owing to the critical limitations of previous in vitro cultures. Previous studies have been unable to reproduce liver-stage development in vitro , hindering research on this stage. This study aimed to provide a novel in vitro research platform using a laboratory strain of Fasciola hepatica/gigantica hybrid. Juveniles derived from the livers of mice at 7 and 11 days post-infection (dpi) survived for nearly 100 days in the basic medium consisting of Roswell Park Memorial Institute (RPMI) 1640 supplemented with 50% fetal bovine serum. Bovine red blood cells (RBC) and sex-inducing substances (SIS) that induce sexualization in a free-living flatworm (planarian) were supplemented to examine their effects on the developmental processes in the liver stage, including growth, body shape change, and reproductive development. SIS induced all three processes, although the last was incomplete, suggesting that the sex-inducing ability of SIS is conserved between free-living and parasitic flatworms. However, RBC was somewhat toxic and less effective than SIS for both growth and reproductive development and could not alter body shape. Furthermore, the combined effects of the two supplements were not observed. In this study, the reproducibility of the development was carefully confirmed, and it was shown that a single SIS supplementation is currently the best condition and more closely mimics liver-stage development. This study provides a preliminary but outstanding in vitro research platform for liver-stage juveniles and will facilitate further drug development.
- 16 March 2026
- Published by Public Library of Science (PLoS) in PLOS Neglected Tropical Diseases
- Vol. 20 (3) , e0014113
Open AccessFraction of sex-inducing substances facilitates growth and body shape change in a Fasciola hepatica/gigantica hybrid: A novel in vitro research platform for studying liver-stage juveniles derived from mice
The absence of an established in vitro platform is a major obstacle in research on parasitic flatworms, including Fasciola flukes. Fasciola flukes cause zoonotic infections that primarily affect the liver and the bile ducts. Infected juveniles can cause severe liver damage in animals, occasionally leading to sudden death. Although resistance to the only drug for the acute liver stage has been reported worldwide, the search for new drugs has been unsuccessful owing to the critical limitations of previous in vitro cultures. Previous studies have been unable to reproduce liver-stage development in vitro , hindering research on this stage. This study aimed to provide a novel in vitro research platform using a laboratory strain of Fasciola hepatica/gigantica hybrid. Juveniles derived from the livers of mice at 7 and 11 days post-infection (dpi) survived for nearly 100 days in the basic medium consisting of Roswell Park Memorial Institute (RPMI) 1640 supplemented with 50% fetal bovine serum. Bovine red blood cells (RBC) and sex-inducing substances (SIS) that induce sexualization in a free-living flatworm (planarian) were supplemented to examine their effects on the developmental processes in the liver stage, including growth, body shape change, and reproductive development. SIS induced all three processes, although the last was incomplete, suggesting that the sex-inducing ability of SIS is conserved between free-living and parasitic flatworms. However, RBC was somewhat toxic and less effective than SIS for both growth and reproductive development and could not alter body shape. Furthermore, the combined effects of the two supplements were not observed. In this study, the reproducibility of the development was carefully confirmed, and it was shown that a single SIS supplementation is currently the best condition and more closely mimics liver-stage development. This study provides a preliminary but outstanding in vitro research platform for liver-stage juveniles and will facilitate further drug development.
- Open Access
- 18 November 2025
- Published by Public Library of Science (PLoS) in PLOS Genetics
- Vol. 21 (11) , e1011944
Identification of an innexin required for termination of the asexual state in planarian reproductive switching
Many metazoans switch between asexual and sexual reproduction based on environmental changes, life cycle phases, or both. This reproductive strategy enables them to benefit from the features of both reproductive modes. In general, asexual reproduction is broadly divided into parthenogenesis and vegetative reproduction. As in parthenogenesis, individuals develop ovaries and lay eggs, the most significant event in switching from parthenogenesis to sexual reproduction is the production of testes. Meanwhile, in vegetative reproduction, individuals do not need germ cells themselves. Thus, they must post-embryonically develop and maintain germ cells derived from pluripotent cells as they switch from vegetative to sexual reproduction. The complicated mechanisms for controlling the postembryonic reproductive development remain unknown. The planarian Dugesia ryukyuensis can switch from vegetative to sexual reproduction by stimulating bioactive compounds called sex-inducing substances, which are widely conserved in Platyhelminthes, including parasitic flatworms. The two reproductive modes are facilitated by the presence of adult pluripotent stem cells, which generate any type of somatic tissue in the asexual state and produce and maintain hermaphroditic reproductive organs in the sexual state. In this study, using RNA sequencing analysis in experimental sexualization by sex-inducing substances, we identified four essential genes for sexualization. A common feature following the knockdown of the four essential genes was a blockage of testicular differentiation. One of the four essential genes was a gap junction gene, Dr-siri ( D ugesia r yukyuensis - s exual i nduction- r elated i nnexin). We suggest that the establishment of a testicular stem cell niche supported by Dr-siri protein is responsible for the breakthrough of dormancy in postembryonic reproductive development in planarian reproductive switching. Our findings suggest that the production of testes might be crucial for even switching from vegetative to sexual reproduction.
- 18 November 2025
- Published by Public Library of Science (PLoS) in PLOS Genetics
- Vol. 21 (11) , e1011944
Open AccessIdentification of an innexin required for termination of the asexual state in planarian reproductive switching
Many metazoans switch between asexual and sexual reproduction based on environmental changes, life cycle phases, or both. This reproductive strategy enables them to benefit from the features of both reproductive modes. In general, asexual reproduction is broadly divided into parthenogenesis and vegetative reproduction. As in parthenogenesis, individuals develop ovaries and lay eggs, the most significant event in switching from parthenogenesis to sexual reproduction is the production of testes. Meanwhile, in vegetative reproduction, individuals do not need germ cells themselves. Thus, they must post-embryonically develop and maintain germ cells derived from pluripotent cells as they switch from vegetative to sexual reproduction. The complicated mechanisms for controlling the postembryonic reproductive development remain unknown. The planarian Dugesia ryukyuensis can switch from vegetative to sexual reproduction by stimulating bioactive compounds called sex-inducing substances, which are widely conserved in Platyhelminthes, including parasitic flatworms. The two reproductive modes are facilitated by the presence of adult pluripotent stem cells, which generate any type of somatic tissue in the asexual state and produce and maintain hermaphroditic reproductive organs in the sexual state. In this study, using RNA sequencing analysis in experimental sexualization by sex-inducing substances, we identified four essential genes for sexualization. A common feature following the knockdown of the four essential genes was a blockage of testicular differentiation. One of the four essential genes was a gap junction gene, Dr-siri ( D ugesia r yukyuensis - s exual i nduction- r elated i nnexin). We suggest that the establishment of a testicular stem cell niche supported by Dr-siri protein is responsible for the breakthrough of dormancy in postembryonic reproductive development in planarian reproductive switching. Our findings suggest that the production of testes might be crucial for even switching from vegetative to sexual reproduction.
- Open Access
- 27 October 2023
- Published by Elsevier in STAR Protocols
- Vol. 4 (4) , 102625
Fractionation of a sex-inducing substance from flatworms using open-column chromatography and reverse-phase high-performance liquid chromatography
- 27 October 2023
- Published by Elsevier in STAR Protocols
- Vol. 4 (4) , 102625
Open AccessFractionation of a sex-inducing substance from flatworms using open-column chromatography and reverse-phase high-performance liquid chromatography
- 3 November 2021
- Published by Zoological Society of Japan in Zoological Science
- Vol. 38 (6) , 544-557
Sex-Inducing Activities of the Land Planarian Bipalium nobile Extract Fractions, Obtained Using Bioassay-Guided Fractionation, in the Freshwater Planarian Dugesia ryukyuensis
Sexually mature planarians produce sex-inducing substances that induce postembryonic development of hermaphroditic reproductive organs in asexual freshwater planarians. Although the sex-inducing substances may be useful for elucidating the mechanism underlying this reproductive switch, the available information is limited. The potency of sex-inducing activity is conserved, at least at the order level. Recently, we showed that the sex-inducing activity in the land planarian Bipalium nobile was much higher than that in freshwater planarians. In the present study, we performed bioassay-guided fractionation of the sex-inducing substances produced by B. nobile and propose that crucial sex-inducing activity that triggers complete sexualization for asexual worms of the freshwater planarian Dugesia ryukyuensis is produced by additive and/or synergetic effects of various sex-inducing substances involved in ovarian development. The current study provided an isolation scheme for the minimum-required combination of sex-inducing substances for producing crucial sex-inducing activity.
- 3 November 2021
- Published by Zoological Society of Japan in Zoological Science
- Vol. 38 (6) , 544-557
Sex-Inducing Activities of the Land Planarian Bipalium nobile Extract Fractions, Obtained Using Bioassay-Guided Fractionation, in the Freshwater Planarian Dugesia ryukyuensis
Sexually mature planarians produce sex-inducing substances that induce postembryonic development of hermaphroditic reproductive organs in asexual freshwater planarians. Although the sex-inducing substances may be useful for elucidating the mechanism underlying this reproductive switch, the available information is limited. The potency of sex-inducing activity is conserved, at least at the order level. Recently, we showed that the sex-inducing activity in the land planarian Bipalium nobile was much higher than that in freshwater planarians. In the present study, we performed bioassay-guided fractionation of the sex-inducing substances produced by B. nobile and propose that crucial sex-inducing activity that triggers complete sexualization for asexual worms of the freshwater planarian Dugesia ryukyuensis is produced by additive and/or synergetic effects of various sex-inducing substances involved in ovarian development. The current study provided an isolation scheme for the minimum-required combination of sex-inducing substances for producing crucial sex-inducing activity.
- 28 July 2021
- Published by Springer Nature in Cell and tissue research
- Vol. 386 (2) , 391-413
Identification of novel yolk ferritins unique to planarians: planarians supply aluminum rather than iron to vitellaria in egg capsules
All animals, other than Platyhelminthes, produce eggs containing yolk, referred to as “entolecithal” eggs. However, only Neoophora, in the phylum Platyhelminthes, produce “ectolecithal” eggs (egg capsules), in which yolk is stored in the vitelline cells surrounding oocytes. Vitelline cells are derived from vitellaria (yolk glands). Vitellaria are important reproductive organs that may be studied to elucidate unique mechanisms that have been evolutionarily conserved within Platyhelminthes. Currently, only limited molecular level information is available on vitellaria. The current study identified major vitellaria-specific proteins in a freshwater planarian, Dugesia ryukyuensis, using peptide mass fingerprinting (PMF) and expression analyses. Amino acid sequence analysis and orthology analysis via OrthoFinder ver.2.3.8 indicated that the identified major vitellaria-specific novel yolk ferritins were conserved in planarians (Tricladida). Because ferritins play an important role in Fe (iron) storage, we examined the metal elements contained in vitellaria and ectolecithal eggs, using non-heme iron histochemistry, elemental analysis based on inductively coupled plasma mass spectrometry and transmission electron microscopy– energy-dispersive X-ray spectroscopy analysis. Interestingly, vitellaria and egg capsules contained large amounts of aluminum (Al), but not Fe. The knockdown of the yolk ferritin genes caused a decrease in the volume of egg capsules, abnormality in juveniles, and increase in Al content in vitellaria. Yolk ferritins of D. ryukyuensis may regulate Al concentration in vitellaria via their pooling function of Al and protect the egg capsule production and normal embryogenesis from Al toxicity.
- 28 July 2021
- Published by Springer Nature in Cell and tissue research
- Vol. 386 (2) , 391-413
Identification of novel yolk ferritins unique to planarians: planarians supply aluminum rather than iron to vitellaria in egg capsules
All animals, other than Platyhelminthes, produce eggs containing yolk, referred to as “entolecithal” eggs. However, only Neoophora, in the phylum Platyhelminthes, produce “ectolecithal” eggs (egg capsules), in which yolk is stored in the vitelline cells surrounding oocytes. Vitelline cells are derived from vitellaria (yolk glands). Vitellaria are important reproductive organs that may be studied to elucidate unique mechanisms that have been evolutionarily conserved within Platyhelminthes. Currently, only limited molecular level information is available on vitellaria. The current study identified major vitellaria-specific proteins in a freshwater planarian, Dugesia ryukyuensis, using peptide mass fingerprinting (PMF) and expression analyses. Amino acid sequence analysis and orthology analysis via OrthoFinder ver.2.3.8 indicated that the identified major vitellaria-specific novel yolk ferritins were conserved in planarians (Tricladida). Because ferritins play an important role in Fe (iron) storage, we examined the metal elements contained in vitellaria and ectolecithal eggs, using non-heme iron histochemistry, elemental analysis based on inductively coupled plasma mass spectrometry and transmission electron microscopy– energy-dispersive X-ray spectroscopy analysis. Interestingly, vitellaria and egg capsules contained large amounts of aluminum (Al), but not Fe. The knockdown of the yolk ferritin genes caused a decrease in the volume of egg capsules, abnormality in juveniles, and increase in Al content in vitellaria. Yolk ferritins of D. ryukyuensis may regulate Al concentration in vitellaria via their pooling function of Al and protect the egg capsule production and normal embryogenesis from Al toxicity.
- Open Access
- 20 March 2021
- Published by Springer Nature in Zoological Letters
- Vol. 7 (1) , 1-15
d-Tryptophan enhances the reproductive organ-specific expression of the amino acid transporter homolog Dr-SLC38A9 involved in the sexual induction of planarian Dugesia ryukyuensis
Background: Many animals switch between asexual and sexual reproduction in nature. We previously established a system for the sexual induction of planarian Dugesia ryukyuensis by feeding asexual planarians with minced sexual planarians. We identified dl-tryptophan (Trp) as one of the sex-inducing substances. dl-Trp can induce ovarian development, the first and essential step of sexual induction. d-Trp must act as a principal bioactive compound in terms of ovarian development, because the ovary-inducing activity of d-Trp was 500 times more potent than that of l-Trp. However, how Trp controls sexual induction is still unknown. Results: In this study, qRT-PCR analyses suggested that the putative amino acid transporter gene Dr-SLC38A9 is highly expressed in sexual worms, especially in the yolk glands. In situ hybridization analyses showed that Dr-SLC38A9 is expressed in the ovarian primordia of asexual worms and in the mature ovaries, testes, and yolk glands of sexual worms. In addition, Dr-SLC38A9 RNA interference during sexual induction resulted in the suppression of the development of reproductive organs. These results suggest that Dr-SLC38A9 is involved in the development of these organs. Moreover, we demonstrated that the reproductive organ-specific expression of Dr-SLC38A9 is enhanced by the addition of d-Trp. Conclusion: We propose that d-Trp activates the expression of Dr-SLC38A9 to promote sexual induction in the planarian D. ryukyuensis.
- 20 March 2021
- Published by Springer Nature in Zoological Letters
- Vol. 7 (1) , 1-15
Open Accessd-Tryptophan enhances the reproductive organ-specific expression of the amino acid transporter homolog Dr-SLC38A9 involved in the sexual induction of planarian Dugesia ryukyuensis
Background: Many animals switch between asexual and sexual reproduction in nature. We previously established a system for the sexual induction of planarian Dugesia ryukyuensis by feeding asexual planarians with minced sexual planarians. We identified dl-tryptophan (Trp) as one of the sex-inducing substances. dl-Trp can induce ovarian development, the first and essential step of sexual induction. d-Trp must act as a principal bioactive compound in terms of ovarian development, because the ovary-inducing activity of d-Trp was 500 times more potent than that of l-Trp. However, how Trp controls sexual induction is still unknown. Results: In this study, qRT-PCR analyses suggested that the putative amino acid transporter gene Dr-SLC38A9 is highly expressed in sexual worms, especially in the yolk glands. In situ hybridization analyses showed that Dr-SLC38A9 is expressed in the ovarian primordia of asexual worms and in the mature ovaries, testes, and yolk glands of sexual worms. In addition, Dr-SLC38A9 RNA interference during sexual induction resulted in the suppression of the development of reproductive organs. These results suggest that Dr-SLC38A9 is involved in the development of these organs. Moreover, we demonstrated that the reproductive organ-specific expression of Dr-SLC38A9 is enhanced by the addition of d-Trp. Conclusion: We propose that d-Trp activates the expression of Dr-SLC38A9 to promote sexual induction in the planarian D. ryukyuensis.
- 5 December 2019
- Published by Springer Nature
- p. 272-283
Augmented Interaction Mechanism for Physically Consistent Collaboration Between Humans and Intelligent Agents in Network Management
- 5 December 2019
- Published by Springer Nature
- p. 272-283
Augmented Interaction Mechanism for Physically Consistent Collaboration Between Humans and Intelligent Agents in Network Management
- Open Access
- 8 August 2019
- Published by Springer Nature in Scientific Reports
- Vol. 9 (1) , 1
Author Correction: Transcriptomic analysis reveals differences in the regulation of amino acid metabolism in asexual and sexual planarians
An amendment to this paper has been published and can be accessed via a link at the top of the paper
- 8 August 2019
- Published by Springer Nature in Scientific Reports
- Vol. 9 (1) , 1
Open AccessAuthor Correction: Transcriptomic analysis reveals differences in the regulation of amino acid metabolism in asexual and sexual planarians
An amendment to this paper has been published and can be accessed via a link at the top of the paper
- Open Access
- 16 April 2019
- Published by Springer Nature in Scientific Reports
- Vol. 9 (1) , 1-20
Transcriptomic analysis reveals differences in the regulation of amino acid metabolism in asexual and sexual planarians
Many flatworms can alternate between asexual and sexual reproduction. This is a powerful reproductive strategy enabling them to benefit from the features of the two reproductive modes, namely, rapid multiplication and genetic shuffling. The two reproductive modes are enabled by the presence of pluripotent adult stem cells (neoblasts), by generating any type of tissue in the asexual mode, and producing and maintaining germ cells in the sexual mode. In the current study, RNA sequencing (RNA-seq) was used to compare the transcriptomes of two phenotypes of the planarian Dugesia ryukyuensis: an asexual OH strain and an experimentally sexualized OH strain. Pathway enrichment analysis revealed striking differences in amino acid metabolism in the two worm types. Further, the analysis identified serotonin as a new bioactive substance that induced the planarian ovary de novo in a postembryonic manner. These findings suggest that different metabolic states and physiological conditions evoked by sex-inducing substances likely modulate stem cell behavior, depending on their different function in the asexual and sexual reproductive modes. The combination of RNA-seq and a feeding assay in D. ryukyuensis is a powerful tool for studying the alternation of reproductive modes, disentangling the relationship between gene expression and chemical signaling molecules.
- 16 April 2019
- Published by Springer Nature in Scientific Reports
- Vol. 9 (1) , 1-20
Open AccessTranscriptomic analysis reveals differences in the regulation of amino acid metabolism in asexual and sexual planarians
Many flatworms can alternate between asexual and sexual reproduction. This is a powerful reproductive strategy enabling them to benefit from the features of the two reproductive modes, namely, rapid multiplication and genetic shuffling. The two reproductive modes are enabled by the presence of pluripotent adult stem cells (neoblasts), by generating any type of tissue in the asexual mode, and producing and maintaining germ cells in the sexual mode. In the current study, RNA sequencing (RNA-seq) was used to compare the transcriptomes of two phenotypes of the planarian Dugesia ryukyuensis: an asexual OH strain and an experimentally sexualized OH strain. Pathway enrichment analysis revealed striking differences in amino acid metabolism in the two worm types. Further, the analysis identified serotonin as a new bioactive substance that induced the planarian ovary de novo in a postembryonic manner. These findings suggest that different metabolic states and physiological conditions evoked by sex-inducing substances likely modulate stem cell behavior, depending on their different function in the asexual and sexual reproductive modes. The combination of RNA-seq and a feeding assay in D. ryukyuensis is a powerful tool for studying the alternation of reproductive modes, disentangling the relationship between gene expression and chemical signaling molecules.
- Open Access
- 31 August 2018
- Published by Springer Nature in Zoological Letters
- Vol. 4 (1) , 25
Correction to: A comprehensive comparison of sex-inducing activity in asexual worms of the planarian Dugesia ryukyuensis: the crucial sex-inducing substance appears to be present in yolk glands in Tricladida
Following publication of the original article [1] the author advised that (in the ‘Discussion’ section) the letter ‘L’ and ‘D’ in some expressions (namely, D and L in L-Trp, D-Trp and L-Asn-D-Trp-L-Phe) were not written in the format of ‘small capital letters’. Rather, they were written as lower-case letters.
- 31 August 2018
- Published by Springer Nature in Zoological Letters
- Vol. 4 (1) , 25
Open AccessCorrection to: A comprehensive comparison of sex-inducing activity in asexual worms of the planarian Dugesia ryukyuensis: the crucial sex-inducing substance appears to be present in yolk glands in Tricladida
Following publication of the original article [1] the author advised that (in the ‘Discussion’ section) the letter ‘L’ and ‘D’ in some expressions (namely, D and L in L-Trp, D-Trp and L-Asn-D-Trp-L-Phe) were not written in the format of ‘small capital letters’. Rather, they were written as lower-case letters.