Lingyu Yang
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Lingyu Yang has a total of 19 co-authors. Here are the top co-authors by number of shared publications:
Dehai Xian
Department of Anatomy, Southwest Medical University, Luzhou 646000, China
2 shared publications- Jianqiao Zhong
Department of Dermatology
2 shared publications - Jing Song
Department of Dermatology, The Affiliated Hospital of Southwest Medical University, Luzhou 646000, China
2 shared publications - Rui Lai
Department of Dermatology, The Affiliated Hospital of Southwest Medical University, Luzhou 646000, China
2 shared publications Xia Xiong
Department of Dermatology, The Affiliated Hospital of Southwest Medical University, Luzhou 646000, China
2 shared publications- Chengxiao Han
School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
1 shared publication
Latest Publications
- 14 November 2020
- Published by Wiley in Molecular Ecology Resources
- Vol. 21 (3) , 897-911
Chromosome level assembly reveals a unique immune gene organization and signatures of evolution in the common pheasant
The common pheasant Phasianus colchicus, belonging to the order Galliformes and family Phasianidae, is the most widespread species. Despite a long history of captivity, the domestication of this bird is still at a preliminary stage. Recently, the demand for accelerating its transformation to poultry for meat and egg production has been increasing. In this study, we assembled high quality, chromosome scale genome of the common pheasant by using PacBio long reads, next‐generation short reads, and Hi‐C technology. The primary assembly has contig N50 size of 1.33 Mb and scaffold N50 size of 59.46 Mb, with a total size of 0.99 Gb, resolving most macrochromosomes into single scaffolds. A total of 23,058 genes and 10.71 Mb interspersed repeats were identified, constituting 30.31% and 10.71% of the common pheasant genome, respectively. Our phylogenetic analysis revealed that the common pheasant shared common ancestors with turkey about 24.7–34.5 million years ago (Ma). Rapidly evolved gene families, as well as branch‐specific positively selected genes, indicate that calcium‐related genes are potentially related to the adaptive and evolutionary change of the common pheasant. Interestingly, we found that the common pheasant has a unique major histocompatibility complex B locus (MHC‐B) structure: three major inversions occurred in the sequence compared with chicken MHC‐B. Furthermore, we detected signals of selection in five breeds of domestic common pheasant, several of which are production‐oriented.
- 14 November 2020
- Published by Wiley in Molecular Ecology Resources
- Vol. 21 (3) , 897-911
Chromosome level assembly reveals a unique immune gene organization and signatures of evolution in the common pheasant
The common pheasant Phasianus colchicus, belonging to the order Galliformes and family Phasianidae, is the most widespread species. Despite a long history of captivity, the domestication of this bird is still at a preliminary stage. Recently, the demand for accelerating its transformation to poultry for meat and egg production has been increasing. In this study, we assembled high quality, chromosome scale genome of the common pheasant by using PacBio long reads, next‐generation short reads, and Hi‐C technology. The primary assembly has contig N50 size of 1.33 Mb and scaffold N50 size of 59.46 Mb, with a total size of 0.99 Gb, resolving most macrochromosomes into single scaffolds. A total of 23,058 genes and 10.71 Mb interspersed repeats were identified, constituting 30.31% and 10.71% of the common pheasant genome, respectively. Our phylogenetic analysis revealed that the common pheasant shared common ancestors with turkey about 24.7–34.5 million years ago (Ma). Rapidly evolved gene families, as well as branch‐specific positively selected genes, indicate that calcium‐related genes are potentially related to the adaptive and evolutionary change of the common pheasant. Interestingly, we found that the common pheasant has a unique major histocompatibility complex B locus (MHC‐B) structure: three major inversions occurred in the sequence compared with chicken MHC‐B. Furthermore, we detected signals of selection in five breeds of domestic common pheasant, several of which are production‐oriented.
- Open Access
- 11 April 2018
- Published by Wiley in BioMed Research International
- Vol. 2018, 1-12
Pruritus: Progress toward Pathogenesis and Treatment
Pruritus, the most common cutaneous symptom, is widely seen in many skin complaints. It is an uncomfortable feeling on the skin and sometimes impairs patients’ quality of life. At present, the specific mechanism of pruritus still remains unclear. Antihistamines, which are usually used to relieve pruritus, ineffectively work in some patients with itching. Recent evidence has suggested that, apart from histamine, many mediators and signaling pathways are involved in the pathogenesis of pruritus. Various therapeutic options for itching correspondingly have been developed. In this review, we summarize the updated pathogenesis and therapeutic strategies for pruritus.
- 11 April 2018
- Published by Wiley in BioMed Research International
- Vol. 2018, 1-12
Open AccessPruritus: Progress toward Pathogenesis and Treatment
Pruritus, the most common cutaneous symptom, is widely seen in many skin complaints. It is an uncomfortable feeling on the skin and sometimes impairs patients’ quality of life. At present, the specific mechanism of pruritus still remains unclear. Antihistamines, which are usually used to relieve pruritus, ineffectively work in some patients with itching. Recent evidence has suggested that, apart from histamine, many mediators and signaling pathways are involved in the pathogenesis of pruritus. Various therapeutic options for itching correspondingly have been developed. In this review, we summarize the updated pathogenesis and therapeutic strategies for pruritus.
- Open Access
- 12 March 2018
- Published by Wiley in BioMed Research International
- Vol. 2018, 1-11
Proanthocyanidins against Oxidative Stress: From Molecular Mechanisms to Clinical Applications
Proanthocyanidins (PCs) are naturally occurring polyphenolic compounds abundant in many vegetables, plant skins (rind/bark), seeds, flowers, fruits, and nuts. Numerousin vitroandin vivostudies have demonstrated myriad effects potentially beneficial to human health, such as antioxidation, anti-inflammation, immunomodulation, DNA repair, and antitumor activity. Accumulation of prooxidants such as reactive oxygen species (ROS) exceeding cellular antioxidant capacity results in oxidative stress (OS), which can damage macromolecules (DNA, lipids, and proteins), organelles (membranes and mitochondria), and whole tissues. OS is implicated in the pathogenesis and exacerbation of many cardiovascular, neurodegenerative, dermatological, and metabolic diseases, both through direct molecular damage and secondary activation of stress-associated signaling pathways. PCs are promising natural agents to safely prevent acute damage and control chronic diseases at relatively low cost. In this review, we summarize the molecules and signaling pathways involved in OS and the corresponding therapeutic mechanisms of PCs.
- 12 March 2018
- Published by Wiley in BioMed Research International
- Vol. 2018, 1-11
Open AccessProanthocyanidins against Oxidative Stress: From Molecular Mechanisms to Clinical Applications
Proanthocyanidins (PCs) are naturally occurring polyphenolic compounds abundant in many vegetables, plant skins (rind/bark), seeds, flowers, fruits, and nuts. Numerousin vitroandin vivostudies have demonstrated myriad effects potentially beneficial to human health, such as antioxidation, anti-inflammation, immunomodulation, DNA repair, and antitumor activity. Accumulation of prooxidants such as reactive oxygen species (ROS) exceeding cellular antioxidant capacity results in oxidative stress (OS), which can damage macromolecules (DNA, lipids, and proteins), organelles (membranes and mitochondria), and whole tissues. OS is implicated in the pathogenesis and exacerbation of many cardiovascular, neurodegenerative, dermatological, and metabolic diseases, both through direct molecular damage and secondary activation of stress-associated signaling pathways. PCs are promising natural agents to safely prevent acute damage and control chronic diseases at relatively low cost. In this review, we summarize the molecules and signaling pathways involved in OS and the corresponding therapeutic mechanisms of PCs.