Zhonghua Wang

Silverleaf sunflower (Helianthus argophyllus Torrey and Gray) is an important salt-tolerant wild species with potential for improving cultivated sunflower, but its tolerance mechanisms remain unclear. Here, we compared the morphological, physiological, and transcriptomic responses of H. annuus and H. argophyllus under salt stress. H. argophyllus showed higher salt tolerance, which was accompanied by reduced membrane damage and better maintenance of photosynthetic performance under salt stress. This enhanced tolerance may be associated with lower stomatal density, dense trichomes, and a thick wax coating. The reference genome of cultivated sunflower (Helianthus annuus) provides limited insight into H. argophyllus because of substantial genomic variance between the two genotypes. Therefore, we generated a high-quality reference transcriptome of H. argophyllus using Iso-Seq long-read sequencing, identifying 50,153 unique genes and capturing over 91% of the gene repertoire. In total, 205 H. argophyllus-specific genes and 475 “fusion genes” were identified in the H. argophyllus transcriptome. Transcriptome profiling of leaves and roots under control and salt-stress conditions revealed upregulation of H. argophyllus-specific aquaporin genes. Commonly upregulated genes in both tissues were enriched in salt stress-responsive pathways. Genes upregulated only in the roots were more closely related to primary responses to abiotic stresses, while genes showing opposite regulation between roots and leaves reflected tissue-specific responses to salt stress. This study provides physiological, morphological, and transcriptomic insights into H. argophyllus salt tolerance and offers valuable resources for sunflower research and breeding.

Cuticular wax covers the aerial surfaces of land plants and protects them from environmental stresses. Diketones (β-diketone and hydroxy-β-diketone) are the most important components of cuticular wax, and mainly associated with the glaucousness appearance in wheat (Triticum aestivum). WAX1 (W1) locus consists of three genes, TaDMH, TaDMP and TaDMC, which are reported to directly participate in wheat wax diketones biosynthesis. However, the regulatory mechanism underlying diketones biosynthesis and glaucousness formation is still largely unclear in wheat. Here, we tested the involvement of the R2R3-type MYB transcription factor TaMYB96-5D in the regulation of wheat wax diketones biosynthesis and glaucousness appearance. The overexpression of TaMYB96-5D caused a significant increase in the total wax load and the amounts of individual wax components, resulting in increased glaucousness and improved drought tolerance. Conversely, three genes of TaMYB96-5A/5B/5D knockout lines exhibited large decreases in the total wax load and the amounts of each wax components, especially diketones, along with a glossy green phenotype and reduced drought tolerance. TaMYB96-5D bound directly to the CAACCA motif in promoters of the TaDMH, TaDMP and TaDMC genes, and activated their transcription. Overall, these findings provide new insights into the regulation of diketones biosynthesis and glaucousness formation in wheat.

Grain filling governs grain weight formation in rice, while starch biosynthesis during this process critically determines both grain quality and yield. In this study, we characterized the heading date regulator OsPRR37 on regulating grain development, starch metabolism, and starch physicochemical properties. The osprr37 mutants exhibited undesirable agronomic traits, including reduced plant height, decreased grain thickness, lower 1000-grain weight, and diminished yield. Moreover, mutant endosperm displayed irregular starch packing, aberrant granules morphology, and decreased granule diameter. Impaired grain filling was observed in osprr37 mutants with reduced grain filling rates, which coincided with elevated soluble sugar content and reduced starch accumulation during grain development. Simultaneously, the expression of starch synthesis-related genes (SSRGs) was significantly altered. osprr37 mutants had decreased total starch and amylose content, leading to reduced starch crystallinity, lower structural order degree, and impaired gelatinization properties. Collectively, our results demonstrated that OsPRR37 functions as a key regulator of grain filling and starch biosynthesis, thereby determining starch composition and physicochemical properties that ultimately affect rice quality and yield.

Rice bacterial leaf blight (BB), caused by Xanthomonas oryzae pv. oryzae (Xoo), leads to severe yield losses in rice. Resistance breeding is a sustainable approach to mitigate the impact of this disease. In this study, a novel BB resistance gene, Xa50(t), was identified in the germplasm line CX315. Genetic analysis revealed that the resistance is conferred by a dominant resistant gene, tentatively named Xa50(t), which provides broad-spectrum and robust resistance to multiple Xoo strains. Using an F₂ population derived from a cross between CX315 and IR24, Xa50(t) was fine-mapped to a 147.7 kb region on the long arm of chromosome 11 flanked by InDel markers M11–588 and M11-602. Gene expression analysis identified three candidate genes out of 13 open reading frames (ORFs) predicted in candidate region. ORF5 and ORF9 (Xa4), encoding a wall-associated kinase (WAK)-like protein, and ORF13, encoding a receptor-like kinase protein, were significantly upregulated in CX315 following Xoo inoculation. While ORF9 is predicted to encode the Xa4 resistance gene, CRISPR/Cas9-based knockout of Xa4 did not abolish Xa50(t)-mediated resistance in the CX315 line, indicating that Xa50(t) confers resistance in a complementary manner. Transcriptome analysis further revealed that oxidative stress response and immune signaling pathways were enriched in CX315 at 48 hours post-inoculation. Together, these findings highlight the potential of Xa50(t) as a valuable genetic resource for improving BB resistance in rice, and the transcriptome data provides molecular insight into the BB resistance response.

To enhance the understanding of yield-related traits in tetraploid wheat, it is crucial to investigate and identify genes that govern superior yield characteristics. This study utilized the wheat55K single nucleotide polymorphism array to genotype a recombinant inbred line (RIL) population consisting of 120 lines developed through the crossbreeding of two tetraploid wheat varieties, Qin Hei-1 (QH-1) and Durum Wheat (DW). An investigation and analysis were conducted on 11 yield-related traits, including peduncle length (PL), neck length (NL), spike length (SL), flowering date (FD), heading date (HD), thousand-kernel weight (TKW), kernel area ratio (KAR), kernel circumference (KC), kernel length (KL), kernel width (KW), and kernel length–width ratio (KL-WR), over a period of three years in two locations, Yang Ling, Shaanxi, and Lin He, Inner Mongolia. The analysis identified nine stable loci among eight agronomic traits, named QSL.QD-1A.1, QNL.QD-4B.2, QPL.QD-4B.1, QFD.QD-2B, QHD.QD-2B.1, QHD.QD-4B, QKC.QD-4B.2, QKL-WR.QD-4B.6, and QKL.QD-4B.2. Among them, the additive effects of three QTLs, QSL.QD-1A.1, QNL.QD-4B.2, and QFD.QD-2B, were positive, indicating that the enhancing alleles at these loci were derived from the parent line QH-1. These three QTLs showed significant positive effects on the phenotypes of the population materials. Furthermore, potential functional genes were identified within the mapping intervals of QSL.QD-1A.1 and QNL.QD-4B.2, which regulate the development of spike length and neck length, respectively. These results provide potential QTLs and candidate genes, which broaden the genetic basis of agronomic traits related to yield, such as SL, NL, PL, and FD, and benefits for wheat breeding and improvement.

Hulless barley (Hordeum vulgare L. var. nudum Hook. f.), belonging to the genus Gramineae, has high and steady output and thus considered as a principal food crop by Tibetan people. Hulless barley grain can be used for food, brewing, and functional health product development, while its straw serves as an essential supplementary forage and is a crucial cereal crop. Lodging can reduce the yield and quality of barley grain and straw, and it hinders mechanical harvesting. It is a significant factor affecting high and stable yields of barley. Unlike other Poaceae plants (such as rice, wheat), hulless barley is mainly grown in high-altitude regions, where it is susceptible to low temperatures, strong winds, and heavy rainfall. As a result, its stem lodging resistance is relatively weak, making it prone to lodging during the growth period. In this study, we observed that the lignin concentration and the contents of lignin monomers (H, S, and G), and neutral detergent fibre of the lodging-resistant variety Kunlun14 were substantially greater than those of the lodging-sensitive variety Menyuanlianglan. We performed the weighted gene co-expression network analysis (WGCNA) and Short Time-series Expression Miner (STEM) analysis of both the lodging-resistant and lodging-sensitive varieties. Through transcriptome sequencing analysis at different developmental stages, combined with the previously annotated genes related to lodging resistance, a total of 72 DEGs were identified. Among these DEGs, 17 genes were related to lignin, cellulose, and hemicellulose synthesis or regulation, including five transcription factors about NAC, MYB and WRKY. Our results provide a basis for further exploring the molecular mechanism of stem lodging resistance in hulless barley and provide valuable gene resources for stem lodging resistance molecular breeding.

Purple-grained wheat (Triticum aestivum L.) is an important germplasm source in crop breeding. Anthocyanin biosynthesis in the pericarps of purple-grained wheat is largely light-dependent; however, the regulatory mechanisms underlying light-induced anthocyanin accumulation in the wheat pericarp remain unknown. Here we determined that anthocyanins rapidly accumulate in the pericarps of the purple-grained wheat cultivar Heixiaomai 76 (H76) at 16 days after pollination under light treatment. Using transcriptome sequencing, differential gene expression analysis, and phylogenetic analysis, we identified two key genes involved in light signaling in wheat: ELONGATED HYPOCOTYL 5-7A (TaHY5-7A) and B-BOX-3B (TaBBX-3B). TaHY5-7A and TaBBX-3B were highly expressed in purple-grained wheat pericarps. The heterologous expression of TaHY5-7A partially restored the phenotype of the Arabidopsis (Arabidopsis thaliana) hy5 mutant, resulting in increased anthocyanin accumulation and a shortened hypocotyl. The heterologous expression of TaBBX-3B in wild-type Arabidopsis had similar effects. TaHY5-7A and TaBBX-3B were nucleus-localized, consistent with a function in transcription regulation. However, TaHY5-7A, which lacks a transactivation domain, was not sufficient to activate the expression of PURPLE PERICARP-MYB 1 (TaPpm1), the key anthocyanin biosynthesis regulator in purple pericarps of wheat. TaHY5-7A physically interacted with TaBBX-3B in yeast two-hybrid and bimolecular fluorescence complementation assays. Additionally, TaHY5-7A, together with TaBBX-3B, greatly enhanced the promoter activity of TaPpm1 in a dual luciferase assay. Overall, our results suggest that TaHY5-7A and TaBBX-3B collaboratively activate TaPpm1 expression to promote light-induced anthocyanin biosynthesis in purple-pericarp wheat.

Main conclusion OsFAR1 encodes a fatty acyl-CoA reductase involved in biosynthesis of primary alcohols and plays an important role in drought stress response in rice. Abstract Cuticular waxes cover the outermost surface of terrestrial plants and contribute to inhibiting nonstomatal water loss and improving plant drought resistance. Primary alcohols are the most abundant components in the leaf cuticular waxes of rice (Oryza sativa), but the biosynthesis and regulation of primary alcohol remain largely unknown in rice. Here, we identified and characterized an OsFAR1 gene belonging to the fatty acyl-CoA reductases (FARs) via a homology-based approach in rice. OsFAR1 was activated by abiotic stresses and abscisic acid, resulting in increased production of primary alcohol in rice. Heterologous expression of OsFAR1 enhanced the amounts of C22:0 and C24:0 primary alcohols in yeast (Saccharomyces cerevisiae) and C24:0 to C32:0 primary alcohols in Arabidopsis. Similarly, OsFAR1 overexpression significantly increased the content of C24:0 to C30:0 primary alcohols on rice leaves. Finally, OsFAR1 overexpression lines exhibited reduced cuticle permeability and enhanced drought tolerance in rice and Arabidopsis. Taken together, our results demonstrate that OsFAR1 is involved in rice primary alcohol biosynthesis and plays an important role in responding to drought and other environmental stresses.