Antônio de Sousa Júnior

This study aimed to identify genomic regions associated with prolificacy in Santa Inês sheep raised in tropical conditions. The prolificacy of the dam was defined as single (only one lamb born per ewe per lambing) or multiple (more than one animal born per ewe per lambing). After quality control of phenotypic data, 1584 lambing records of 715 females occurred between the years 2000 and 2018 were used. The animals were genotyped with the OvineSNP50 BeadChip panel (Illumina Inc.). After quality control of genomic data, information of 46,714 SNPs and 388 samples and females was used for the subsequent analyses. The single-step GWAS (ssGWAS) methodology was used to estimate the effects of genetic markers and their association with the prolificacy. A total of 21 windows of 10 adjacent SNPs that explained at least 0.5% of the additive genetic variance for prolificacy were identified. In such regions, genes associated with different reproductive functions in the female were found: CACNA1E, NTRK1, PLCH1, SMAD3, CENPF, TOPBP1, IL33, DRD2, MID1, HCCS, and ARHGAP6. Some candidate regions related to prolificacy harbor genes that were not previously described and genes without known functions. These results can help to identify genes associated with prolificacy and could be used in genomic reproductive studies on prolificacy, as well as in the selection of the most prolific ewes in the population.

This study aimed to analyze the physical characteristics of eggs from free-range hens of the Sura variety. One hundred eggs underwent assessment of various physical parameters, namely, whole egg weight, equatorial diameter, egg height, shell color, presence of cracks via candling, air chamber height, yolk color, presence of flesh and blood spots, albumen width and length, yolk diameter, yolk weight, and shell weight. Additional analyses included determining the albumen weight (calculated by subtracting the weights of the shell and yolk from the total egg weight), percentages of egg components, shape index, and shell index. Statistical analyses were conducted using GLM SAS software (SAS Institute). The results revealed distinct physical traits; eggs from the Sura variety, regardless of size class (large or small), typically have a more rounded shape, light brown shells, and more orange yolks. These findings confirm that Sura variety eggs possess unique characteristics that could appeal to specific market niches, potentially promoting the production of these birds, supporting biodiversity, and aiding in the prevention of their extinction.

The present research created a tool to measure ultrasound images of the rib eye area in sheep. One hundred twenty-one ultrasound images of sheep were captured, with regions of interest segmented using the U-Net algorithm. The metrics adopted to evaluate automatic segmentations were Dicescore and intersection over union. Finally, a regression analysis was performed using the AdaBoost Regressor and Random Forest Regressor algorithms and the fit of the models was evaluated using the Mean Square Residuals, mean absolute error and coefficient of determination. The values obtained for the Dice metric were 0.94, and for Intersection over Union it was 0.89, demonstrating a high similarity between the actual and predicted values, ranging from 0 to 1. The values of Mean Quadratic Residuals, mean absolute error and coefficient The determination of the regressor models indicated the best fit for the Random Forest Regressor. The U-Net algorithm efficiently segmented ultrasound images of the Longissimus Dorsi muscle, with greater precision than the measurements performed by the specialist. This efficient segmentation allowed the standardization of rib eye area measurements and, consequently, the phenotyping of beef sheep on a large scale.

Gastrointestinal parasites are the main obstacles faced in goats, contributing to the increase in mortality and consequent drop in animal production. This research aimed to identify the prevalence of gastrointestinal helminths in goats in a municipality in the State of Piauí. This is an experimental research of a quantitative nature. The target population of this research was 45 goats with no defined breed from a farm located in the rural area of ​​the municipality of Teresina-PI. These animals received food and mineral salt, according to the technically recommended standard for use in the farm's herd. The 120 animals selected for the study were submitted to stool examinations and stool culture. Regardless of sex, the animals are on average two years old, with an average weight of 38kg ± 500 gr. The feces for the coproparasitological analysis were collected from the rectal ampoule of each animal. The results showed the prevalence of 84% of Haemonchus sp, 0.3% Oesophagostomun sp and 13% of Trichostrongylus sp. Therefore, a deworming scheme according to a professional's protocol is considered relevant, considering the region, habits, and other characteristics for the correct direction of dewormers, in the case of specific solutions.

There is increasing evidence as to the participation of the ovarian renin-angiotensin system in important reproductive processes. The inhibition of the angiotensin-converting enzyme (ACE) caused an increase in the rate of ovulation and pregnancy in the artificial insemination protocol has fixed time (TFIA). This study aimed to investigate the presence and location of Ang II, Ang- (1-7) and ACE2 in goat ovaries and the possibility of the involvement of these peptides in previous results. Ten ovaries from goats were collected in a slaughterhouse, washed in buffered PBS, perfused with protease inhibitor solution and processed for immunohistochemistry protocol. The search for peptides was performed using the avidin–biotin–peroxidase method. A strong immunoreactivity for Ang II in theca cells of antral follicles and corpus luteum was observed. Antral follicles (theca cells), corpus luteum and oocyte cytoplasm in early antral follicles exhibited strong immunoreactivity for Ang-(1-7). There was strong immunoreactivity for ACE2 in the cytoplasm of luteal cells and theca cells of antral follicles. In this study, for the first time, the presence and location of Ang II, Ang-(1-7) and ACE2 are reported in goat ovary, suggesting that there is participation in follicular development, oocyte maturation and corpus luteum development.

Objective: The genetic evaluation of Santa Inês sheep was performed for resistance to gastrointestinal nematode infection (RGNI) and body size using different relationship matrices to assess the efficiency of including genomic information in the analyses.Methods: There were 1,637 animals in the pedigree and 500, 980, and 980 records of RGNI, thoracic depth (TD), and rump height (RH), respectively. The genomic data consisted of 42,748 SNPs and 388 samples genotyped with the OvineSNP50 BeadChip. The (co)variance components were estimated in single- and multi-trait analyses using the numerator relationship matrix (A) and the hybrid matrix H, which blends A with the genomic relationship matrix (G). The BLUP and single-step genomic BLUP methods were used. The accuracies of estimated breeding values and Spearman rank correlation were also used to assess the feasibility of incorporating genomic information in the analyses.Results: The heritability estimates ranged from 0.11±0.07, for TD (in single-trait analysis using the A matrix), to 0.38±0.08, for RH (using the H matrix in multi-trait analysis). The estimates of genetic correlation ranged from –0.65±0.31 to 0.59±0.19, using A, and from –0.42±0.30 to 0.57±0.16 using H. The gains in accuracy of estimated breeding values ranged from 2.22% to 75.00% with the inclusion of genomic information in the analyses.Conclusion: The inclusion of genomic information will benefit the direct selection for the traits in this study, especially RGNI and TD. More information is necessary to improve the understanding on the genetic relationship between resistance to nematode infection and body size in Santa Inês sheep. The genetic evaluation for the evaluated traits was more efficient when genomic information was included in the analyses.

O estudo objetivou avaliar a qualidade seminal de caprinos das raças Canindé (autóctone) e Alpina Britânica (exótica) no Nordeste brasileiro. O experimento foi realizado nos períodos de julho a setembro dos anos de 2015 e 2016. As coletas seminais foram realizadas com auxílio de vagina artificial, de machos das raças Canindé (n = 4) e Alpina Britânica (n = 7). Após a coleta, o sêmen foi avaliado quanto a: volume (ml), concentração (sptz/ml), motilidade (%) e vigor (1-5). Em seguida, diluído em ACP-101c e criopreservado em máquina TK3000^TM. Posteriormente, foram analisados os parâmetros cinéticos, através do software SCA^®, e a atividade mitocondrial. No sêmen fresco, as duas raças apresentaram valores de motilidade e concentração dentro do preconizado para a espécie. Entretanto, os valores de volume e circunferência escrotal foram superiores na raça Alpina Britânica (0,73 ml ± 0,32; 27,35 cm ± 2,09) do que na raça Canindé (0,36 ml ± 0,07; 23,25 cm ± 0,95) (p < 0,05). Já no sêmen descongelado, os parâmetros motilidade total - MT (36,96% ± 11,16 vs. 20,50% ± 14,15), motilidade progressiva - MP (26,67% ± 11,13 vs. 11,29% ± 9,42), vigor (2,91 ± 0,90 vs. 1,88 ± 0,67), velocidade curvilinear - VCL (78,12 µm/s ± 12,41 vs. 59,28 µm/s ± 15,57), velocidade linear - VSL (49,23 µm/s ± 9,87 vs. 29,9 µm/s ± 9,48), velocidade média da trajetória - VAP (66,08 µm/s ± 12,77 vs. 45,70 µm/s ± 12,20), linearidade - LIN (62,97% ± 6,96 vs. 49,54%±9,50), retilinearidade - STR (74,63% ± 6,44 vs. 65,77% ± 8,92), e oscilação - WOB (84,32% ± 5,94 vs. 74,42% ± 7,31) foram superiores para a raça Canindé em detrimento à Alpina Britânica (p < 0,05). Portanto, o sêmen fresco das duas raças podem ser utilizados em biotécnicas reprodutivas. Já o sêmen pós-descongelação da raça Canindé apresentou melhor qualidade, provavelmente pelos animais estarem mais adaptados às condições adversas da região Nordeste, sendo recomendado para programas de inseminação artificial.

Objective: The aim of this study was to estimate (co) variance components and genetic parameters for categorical carcass traits using Bayesian inference via mixed linear and threshold animal models in Anglonubian goats. Methods: Data were obtained from Anglonubian goats reared in the Brazilian Mid-North region. The traits in study were body condition score, marbling in the rib eye, ribeye area, fat thickness of the sternum, hip height, leg perimeter, and body weight. The numerator relationship matrix contained information from 793 animals. The single- and two- trait analyses were performed to estimate (co) variance components and genetic parameters via linear and threshold animal models. For estimation of genetic parameters, chains with 2 and 4 million cycles were tested. An 1,000,000-cycle initial burn-in was considered with values taken every 250 cycles, in a total of 4,000 samples. Convergence was monitored by Geweke criteria and Monte Carlo error chain. Results: Threshold model best fits categorical data since it is more efficient to detect genetic variability. In two-trait analysis the contribution of the increase in information and the correlations between traits contributed to increase the estimated values for (co) variance components and heritability, in comparison to single-trait analysis. Heritability estimates for the study traits were from low to moderate magnitude. Conclusion: Direct selection of the continuous distribution of traits such as thickness sternal fat and hip height allows obtaining the indirect selection for marbling of ribeye.

The objective of the present study was to evaluate the feeding behavior of feedlot Nellore bulls fed two levels of concentrate (650 and 710 g/kg dry matter) with or without the inclusion of 350 g babassu mesocarp meal/kg dry matter in the concentrate. Twenty-eight animals at 18 months of initial age and 356.66±19.25 kg initial body weight were used. A completely randomized design was used with treatments in a 2 × 2 factorial arrangement. Increase in concentrate level from 650 to 710 g/kg dry matter did not change the feeding time, of 194.41 and 189.64 minutes/day, respectively. The inclusion of 350 g babassu mesocarp meal/kg dry matter in the concentrate increased the feeding time from 173.92 to 210.12 minutes/day, ensuring similar energy intake in relation to the diets without this byproduct. Rumination time was not changed by increasing the concentrate level in diets with 350 g babassu mesocarp meal/kg dry matter in the concentrate, with average values of 420.48 and 398.09 minutes/day for the levels of 650 and 710 g concentrate/kg dry matter, respectively. However, in diets without babassu mesocarp meal, the rumination time was reduced by the concentrate level, with average values of 452.14 and 409.76 minutes/day for 650 and 710 g of concentrate/kg dry matter, respectively. Time spent on other activities increased from 810.23 to 860.00 minutes/day with increase in the concentrate level, which was not changed in the diets containing babassu mesocarp meal. The inclusion of babassu mesocarp meal in the diet altered the feeding behavior of feedlot cattle, due to the need to increase the feeding time to maintain the energy intake