Jie Lin
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Jie Lin has a total of 49 co-authors. Here are the top co-authors by number of shared publications:
- Jinchi Zhang
Co-Innovation Center for Sustainable Forestry in Southern China, Jiangsu Province Key Laboratory of Soil and Water Conservation and Ecological Restoration, Nanjing Forestry University, 159 Longpan Road, Nanjing 210037, China
7 shared publications - Xin Liu
College of Forestry, Nanjing Forestry University, Nanjing 210037, China
5 shared publications - Chong Li
Department of Renewable Resources University of Alberta Edmonton Alberta Canada
3 shared publications - Fulin Jing
Co-Innovation Center for Sustainable Forestry in Southern China, Jiangsu Province Key Laboratory of Soil and Water Conservation and Ecological Restoration, College of Forestry and Grassland, College of Soil and Water Conservation, Nanjing Forestry University, 159 Longpan Road, Nanjing 210037, China
2 shared publications - Jinping Wang
Co-Innovation Center for Sustainable Forestry in Southern China, Jiangsu Province Key Laboratory of Soil and Water Conservation and Ecological Restoration, Nanjing Forestry University, 159 Longpan Road, Nanjing 210037, China
2 shared publications - Miaojing Meng
Co-Innovation Center for Sustainable Forestry in Southern China, Jiangsu Province Key Laboratory of Soil and Water Conservation and Ecological Restoration, Nanjing Forestry University, 159 Longpan Road, Nanjing 210037, China
2 shared publications
Latest Publications
- Open Access
Biochar Promotes the Growth of Arbuscular Mycorrhizal Fungi on Taxodium ‘Zhongshanshan’ in Coastal Saline–Alkali Soils
Taxodium ‘Zhongshanshan’ serves as a primary afforestation species in coastal saline–alkali soils, yet its healthy growth is significantly constrained by excessive soil salinity and nutrient deficiencies. This study investigated the synergistic effects of arbuscular mycorrhizal fungi (AMF) with organic amendments (biochar/straw) on ameliorating soil amelioration and plant adaptation. Six treatments were implemented: Control (CK), Biochar (B), Straw (S), AMF (M), AMF+Biochar (M+B), and AMF+Straw (M+S), with physiological and edaphic parameters monitored over two growth cycles. The results revealed that the M+B treatment demonstrated superior performance, achieving the lowest soil pH (8.06) and electrical conductivity (0.25 mS/cm) alongside reduced Na+ accumulation in plant tissues (0.28–0.88 mg/g). Synergistic effects were evident in enhanced chlorophyll synthesis, soluble protein production, and antioxidant enzyme activation. Partial Least Squares Path Modeling (PLS-PM) analysis revealed that soil nitrogen availability indirectly stimulated growth through upregulation of soluble proteins (path coefficient: 0.54) and antioxidant activity (0.22), with cumulative indirect effects (0.88) outweighing direct inhibition (−0.36). These finding provide actionable insights for coastal afforestation strategies using microbial–organic material co-application.
Open AccessBiochar Promotes the Growth of Arbuscular Mycorrhizal Fungi on Taxodium ‘Zhongshanshan’ in Coastal Saline–Alkali Soils
Taxodium ‘Zhongshanshan’ serves as a primary afforestation species in coastal saline–alkali soils, yet its healthy growth is significantly constrained by excessive soil salinity and nutrient deficiencies. This study investigated the synergistic effects of arbuscular mycorrhizal fungi (AMF) with organic amendments (biochar/straw) on ameliorating soil amelioration and plant adaptation. Six treatments were implemented: Control (CK), Biochar (B), Straw (S), AMF (M), AMF+Biochar (M+B), and AMF+Straw (M+S), with physiological and edaphic parameters monitored over two growth cycles. The results revealed that the M+B treatment demonstrated superior performance, achieving the lowest soil pH (8.06) and electrical conductivity (0.25 mS/cm) alongside reduced Na+ accumulation in plant tissues (0.28–0.88 mg/g). Synergistic effects were evident in enhanced chlorophyll synthesis, soluble protein production, and antioxidant enzyme activation. Partial Least Squares Path Modeling (PLS-PM) analysis revealed that soil nitrogen availability indirectly stimulated growth through upregulation of soluble proteins (path coefficient: 0.54) and antioxidant activity (0.22), with cumulative indirect effects (0.88) outweighing direct inhibition (−0.36). These finding provide actionable insights for coastal afforestation strategies using microbial–organic material co-application.
- Open Access
Solid Microbial Fertilizers Prepared with Different Carriers Have the Potential to Enhance Plant Growth
Microbial inoculants are vital for promoting plant growth and facilitating the ecological restoration of degraded forested regions near abandoned mine sites. However, the direct application of liquid microbial inoculants is often challenging due to low microbial activities and poor transport efficiencies, which limit their effectiveness in complex soil environments. To tackle these challenges, this study utilized immobilized microbial technology to evaluate the effectiveness of solid microbial inoculants sourced from peat (P), biochar (BC), and spent mushroom substrates (SMSs) in enhancing the soil’s multifunctionality and promoting plant growth. Specifically, this research sought to assess the effectiveness of solid microbial inoculants derived from peat (P), biochar (B), and spent mushroom substrates (SMSs) in enhancing soil multifunctionality and promoting plant growth in nutrient-deficient soils that were affected by abandoned mine sites. We aimed to evaluate the performance of different solid microbial inoculants in improving the soil’s nutrient content and enzyme activities. A 24-week pot experiment was conducted using Medicago sativa L. in nutrient-poor soil. The results demonstrated that, in contrast to peat and biochar, SMSs effectively interacted with microbial inoculants and significantly improved the nutrient content and enzyme activities of nutrient-deficient soil. It was noted that β-1,4-glucosidase (BG), invertase, β-1,4-N-acetylglucosaminidase (NAG), urease, and soil available phosphorus increased by 204%, 405%, 118%, 198%, and 297%, respectively. The soil’s multifunctionality improved by 320% compared with the CK, and the plant biomass also increased significantly. Further, our random forest analysis indicated that the soil available phosphorus, ammonium nitrogen, total nitrogen, total carbon content, arylsulfatase, pH, total phosphorus, NAG, and BG were key environmental factors that induced changes in plant biomass. These findings highlighted the potential of SMSs as an effective carrier for immobilized microbial inoculants, which provides a sustainable approach for the restoration of forest soils surrounding abandoned mine sites, as well as a promising avenue for the valorization of agricultural waste.
Open AccessSolid Microbial Fertilizers Prepared with Different Carriers Have the Potential to Enhance Plant Growth
Microbial inoculants are vital for promoting plant growth and facilitating the ecological restoration of degraded forested regions near abandoned mine sites. However, the direct application of liquid microbial inoculants is often challenging due to low microbial activities and poor transport efficiencies, which limit their effectiveness in complex soil environments. To tackle these challenges, this study utilized immobilized microbial technology to evaluate the effectiveness of solid microbial inoculants sourced from peat (P), biochar (BC), and spent mushroom substrates (SMSs) in enhancing the soil’s multifunctionality and promoting plant growth. Specifically, this research sought to assess the effectiveness of solid microbial inoculants derived from peat (P), biochar (B), and spent mushroom substrates (SMSs) in enhancing soil multifunctionality and promoting plant growth in nutrient-deficient soils that were affected by abandoned mine sites. We aimed to evaluate the performance of different solid microbial inoculants in improving the soil’s nutrient content and enzyme activities. A 24-week pot experiment was conducted using Medicago sativa L. in nutrient-poor soil. The results demonstrated that, in contrast to peat and biochar, SMSs effectively interacted with microbial inoculants and significantly improved the nutrient content and enzyme activities of nutrient-deficient soil. It was noted that β-1,4-glucosidase (BG), invertase, β-1,4-N-acetylglucosaminidase (NAG), urease, and soil available phosphorus increased by 204%, 405%, 118%, 198%, and 297%, respectively. The soil’s multifunctionality improved by 320% compared with the CK, and the plant biomass also increased significantly. Further, our random forest analysis indicated that the soil available phosphorus, ammonium nitrogen, total nitrogen, total carbon content, arylsulfatase, pH, total phosphorus, NAG, and BG were key environmental factors that induced changes in plant biomass. These findings highlighted the potential of SMSs as an effective carrier for immobilized microbial inoculants, which provides a sustainable approach for the restoration of forest soils surrounding abandoned mine sites, as well as a promising avenue for the valorization of agricultural waste.
- Open Access
Impact of Climate and Vegetation Dynamics on the Ecosystem Services of Subtropical Forests—A Case Study of Baishanzu National Park Area, China
Forest ecosystems, as the primary component of terrestrial ecosystems, provide essential ecosystem services (ESs) critical for sustainable human development. However, changes in climate and vegetation can alter these forest ESs. Understanding the complex relationships between regional climate, vegetation, and ESs is key to ensuring the sustainable management of forest ESs. Therefore, this study, using Baishanzu National Park as a case example, analyzed the impacts of regional climate and vegetation dynamics (vegetation coverage, forest type, and forest structure) on forest ESs, specifically water yield (WY), soil conservation (SC), net primary productivity (NPP), and habitat quality (HQ). The results indicate that from 2000 to 2020, the forest Composite Index of Ecosystem Services (CIES) in Baishanzu National Park increased. Climate and vegetation dynamics have significant effects on forest ESs. Specifically, changes in WY and SC are primarily influenced by climate change, while changes in NPP and HQ are mainly affected by changes in forest type and structure. Complex trade-offs and synergies exist among different ESs, and the driving mechanisms of climate and vegetation changes on ES variations are also complex, involving both direct and indirect effects, with significant spatial heterogeneity. This study provides important references for the sustainable management and appropriate restoration of regional forest ESs.
Open AccessImpact of Climate and Vegetation Dynamics on the Ecosystem Services of Subtropical Forests—A Case Study of Baishanzu National Park Area, China
Forest ecosystems, as the primary component of terrestrial ecosystems, provide essential ecosystem services (ESs) critical for sustainable human development. However, changes in climate and vegetation can alter these forest ESs. Understanding the complex relationships between regional climate, vegetation, and ESs is key to ensuring the sustainable management of forest ESs. Therefore, this study, using Baishanzu National Park as a case example, analyzed the impacts of regional climate and vegetation dynamics (vegetation coverage, forest type, and forest structure) on forest ESs, specifically water yield (WY), soil conservation (SC), net primary productivity (NPP), and habitat quality (HQ). The results indicate that from 2000 to 2020, the forest Composite Index of Ecosystem Services (CIES) in Baishanzu National Park increased. Climate and vegetation dynamics have significant effects on forest ESs. Specifically, changes in WY and SC are primarily influenced by climate change, while changes in NPP and HQ are mainly affected by changes in forest type and structure. Complex trade-offs and synergies exist among different ESs, and the driving mechanisms of climate and vegetation changes on ES variations are also complex, involving both direct and indirect effects, with significant spatial heterogeneity. This study provides important references for the sustainable management and appropriate restoration of regional forest ESs.
- Open Access
Long-Term Planting of Taxodium Hybrid ‘Zhongshanshan’ Can Effectively Enhance the Soil Aggregate Stability in Saline–Alkali Coastal Areas
Not enough research has been conducted on the mechanisms influencing the stability of soil aggregates in coastal saline–alkaline soil and the dynamic changes in aggregates in the succession process of coastal saline–alkaline soil brought on by longer planting times. In this study, soil aggregate composition, stability, and influencing factors of 0–20 cm, 20–40 cm, and 40–60 cm soil layers in different planting time stages were analyzed in the reclaimed land at the initial stage of afforestation and the Taxodium hybrid ‘Zhongshanshan’ plantation with planting times of 6, 10, 17, and 21 years. The results show that, with the increase in planting time, the aggregate stability of the plantation increased significantly. In the 0–20 cm soil layer, the geometric mean diameter (GMD) and aggregate size >0.25 mm (R0.25) increased by 81.15% and 89.80%, respectively, when the planting time was 21 years, compared with the reclaimed land. The structural equation (SEM) showed that planting time had a direct positive effect (path coefficient 0.315) on aggregate stability. However, soil sucrase (0.407) and β-glucosidase (0.229) indirectly improved the stability of aggregates by affecting soil organic carbon. In summary, the establishment of Taxodium hybrid ‘Zhongshanshan’ plants on coastal saline–alkali land is beneficial for stabilizing soil aggregates, improving soil structure, and boosting soil quality. Long-term planting of Taxodium hybrid ‘Zhongshanshan’ can be an effective measure for ecological restoration in this region.
Open AccessLong-Term Planting of Taxodium Hybrid ‘Zhongshanshan’ Can Effectively Enhance the Soil Aggregate Stability in Saline–Alkali Coastal Areas
Not enough research has been conducted on the mechanisms influencing the stability of soil aggregates in coastal saline–alkaline soil and the dynamic changes in aggregates in the succession process of coastal saline–alkaline soil brought on by longer planting times. In this study, soil aggregate composition, stability, and influencing factors of 0–20 cm, 20–40 cm, and 40–60 cm soil layers in different planting time stages were analyzed in the reclaimed land at the initial stage of afforestation and the Taxodium hybrid ‘Zhongshanshan’ plantation with planting times of 6, 10, 17, and 21 years. The results show that, with the increase in planting time, the aggregate stability of the plantation increased significantly. In the 0–20 cm soil layer, the geometric mean diameter (GMD) and aggregate size >0.25 mm (R0.25) increased by 81.15% and 89.80%, respectively, when the planting time was 21 years, compared with the reclaimed land. The structural equation (SEM) showed that planting time had a direct positive effect (path coefficient 0.315) on aggregate stability. However, soil sucrase (0.407) and β-glucosidase (0.229) indirectly improved the stability of aggregates by affecting soil organic carbon. In summary, the establishment of Taxodium hybrid ‘Zhongshanshan’ plants on coastal saline–alkali land is beneficial for stabilizing soil aggregates, improving soil structure, and boosting soil quality. Long-term planting of Taxodium hybrid ‘Zhongshanshan’ can be an effective measure for ecological restoration in this region.
- 19 October 2023
- Published by Springer Nature in Environmental Management
- Vol. 73 (3) , 493-508
Long-Term Effects of Ecological Restoration Projects on Ecosystem Services and Their Spatial Interactions: A Case Study of Hainan Tropical Forest Park in China
Ecological restoration projects aim to comprehensively intervene in damaged or deteriorating ecosystems, restore them, improve the provision of ecosystem services, and achieve harmonious coexistence between humans and nature. Implementing ecological restoration projects leads to continuous changes in land use/land cover. Studying the long-term changes in land use/land cover and their impacts on ecosystem services, as well as the trade-off and synergy between these services, helps evaluate the long-term effectiveness of ecological restoration projects in restoring ecosystems. Therefore, this study analyzes the land use/land cover, and ecosystem services of the Hainan Tropical Forest Park in China to address this. Since 2000, the area has undergone multiple ecological restoration projects, divided roughly into two stages: 2003–2013 and 2013–2021. The InVEST model is used to quantify three essential ecosystem services in mountainous regions (water yield, carbon storage, and soil conservation), and redundancy analysis identifies the primary driving factors influencing their changes. We conducted spatial autocorrelation analysis to examine the interplay among ecosystem services under long-term land use/land cover change. The results indicate a decrease in the total supply of water yield (−5.14%) and carbon storage (−3.21%) in the first phase. However, the second phase shows an improvement in ecosystem services, with an increase in the total supply of water yield (11.45%), carbon storage (27.58%), and soil conservation (21.95%). The redundancy analysis results reveal that land use/land cover are the primary driving factors influencing the changes in ecosystem services. Furthermore, there is a shift in the trade-off and synergy between ecosystem services at different stages, with significant differences in spatial distribution. The findings of this study provide more spatially targeted suggestions for the restoration and management of tropical montane rainforests in the future.
- 19 October 2023
- Published by Springer Nature in Environmental Management
- Vol. 73 (3) , 493-508
Long-Term Effects of Ecological Restoration Projects on Ecosystem Services and Their Spatial Interactions: A Case Study of Hainan Tropical Forest Park in China
Ecological restoration projects aim to comprehensively intervene in damaged or deteriorating ecosystems, restore them, improve the provision of ecosystem services, and achieve harmonious coexistence between humans and nature. Implementing ecological restoration projects leads to continuous changes in land use/land cover. Studying the long-term changes in land use/land cover and their impacts on ecosystem services, as well as the trade-off and synergy between these services, helps evaluate the long-term effectiveness of ecological restoration projects in restoring ecosystems. Therefore, this study analyzes the land use/land cover, and ecosystem services of the Hainan Tropical Forest Park in China to address this. Since 2000, the area has undergone multiple ecological restoration projects, divided roughly into two stages: 2003–2013 and 2013–2021. The InVEST model is used to quantify three essential ecosystem services in mountainous regions (water yield, carbon storage, and soil conservation), and redundancy analysis identifies the primary driving factors influencing their changes. We conducted spatial autocorrelation analysis to examine the interplay among ecosystem services under long-term land use/land cover change. The results indicate a decrease in the total supply of water yield (−5.14%) and carbon storage (−3.21%) in the first phase. However, the second phase shows an improvement in ecosystem services, with an increase in the total supply of water yield (11.45%), carbon storage (27.58%), and soil conservation (21.95%). The redundancy analysis results reveal that land use/land cover are the primary driving factors influencing the changes in ecosystem services. Furthermore, there is a shift in the trade-off and synergy between ecosystem services at different stages, with significant differences in spatial distribution. The findings of this study provide more spatially targeted suggestions for the restoration and management of tropical montane rainforests in the future.
- Open Access
Forest Conversion and Soil Depth Can Modify the Contributions of Organic and Inorganic Colloids to the Stability of Soil Aggregates
The stability of soil aggregates is critical for maintaining soil structures and is positively correlated with soil resident organic and inorganic colloids. Forest conversion and soil depth affects the formation of soil aggregates; however, the detailed mechanisms involved in their stabilization have not been well investigated. Therefore, to explore the main factors that influence the stability of soil aggregates for different forest types and soil depths, twelve soil samples were collected from four types of forests (native, mixed, Chinese fir, and bamboo forest) and three soil depths (0–10 cm, 10–20 cm, and 20–30 cm) in subtropical forests. The results revealed that the distributions and mean weight diameters (MWDs) of large macroaggregates in the bamboo forest were significantly lower than those in the other forest types at all soil depths (p < 0.05). Organic and inorganic colloids (organically-complexed Fe oxide and fulvic acid) in the soil directly impacted the stability of soil aggregates, while soil properties (e.g., pH and bulk density) indirectly promoted soil aggregate stability through the modification of colloids. In both native and bamboo forests, organic colloids contributed most to the stability of soil aggregates, reaching 80.31% and 61.37%, respectively. The contributions of organic colloids were found to decrease with soil depth, which was primarily due to changes in the organic matter caused by the decomposition of litter. Elucidating and promoting the specific contributions of organic and inorganic colloids on the stability of soil aggregates will be increasingly important for the optimal management of different forest types.
Open AccessForest Conversion and Soil Depth Can Modify the Contributions of Organic and Inorganic Colloids to the Stability of Soil Aggregates
The stability of soil aggregates is critical for maintaining soil structures and is positively correlated with soil resident organic and inorganic colloids. Forest conversion and soil depth affects the formation of soil aggregates; however, the detailed mechanisms involved in their stabilization have not been well investigated. Therefore, to explore the main factors that influence the stability of soil aggregates for different forest types and soil depths, twelve soil samples were collected from four types of forests (native, mixed, Chinese fir, and bamboo forest) and three soil depths (0–10 cm, 10–20 cm, and 20–30 cm) in subtropical forests. The results revealed that the distributions and mean weight diameters (MWDs) of large macroaggregates in the bamboo forest were significantly lower than those in the other forest types at all soil depths (p < 0.05). Organic and inorganic colloids (organically-complexed Fe oxide and fulvic acid) in the soil directly impacted the stability of soil aggregates, while soil properties (e.g., pH and bulk density) indirectly promoted soil aggregate stability through the modification of colloids. In both native and bamboo forests, organic colloids contributed most to the stability of soil aggregates, reaching 80.31% and 61.37%, respectively. The contributions of organic colloids were found to decrease with soil depth, which was primarily due to changes in the organic matter caused by the decomposition of litter. Elucidating and promoting the specific contributions of organic and inorganic colloids on the stability of soil aggregates will be increasingly important for the optimal management of different forest types.
- Open Access
Long-Term Forest Conversion Affects Soil Stability and Humic Substances in Aggregate Fractions in Subtropical China
Soil aggregates are the basic structural components of soil, which are important factors that can predict erosion resistance. However, few researchers have investigated the effects of forest conversion on the stability of soil aggregates, particularly in subtropical forests. In this study, soils from various depths (0 to 30 cm) were collected from four forest types (transformed from broadleaved forests (BMF) to combined coniferous broadleaved (CBMF), Chinese fir (FF), and bamboo forests (BF)) to determine the impacts of forest conversion on the physical and chemical properties of soil, water-stable soil aggregates, and aggregate-associated humic substances. The results showed that forest conversion had no effects on the soil’s physical properties, or the humic substances in bulk soil, but had significant effects on soil aggregates. In addition, the conversion of broadleaved forest to Chinese fir forest increased the soil stability, and to bamboo forest, decreased the soil stability. Finally, the soil’s physicochemical properties were closely related to aggregate-associated humic substances. In summary, specific forest management measures should be applied to strengthen the positive impacts and reduce the negative impacts associated with forest conversion.
Open AccessLong-Term Forest Conversion Affects Soil Stability and Humic Substances in Aggregate Fractions in Subtropical China
Soil aggregates are the basic structural components of soil, which are important factors that can predict erosion resistance. However, few researchers have investigated the effects of forest conversion on the stability of soil aggregates, particularly in subtropical forests. In this study, soils from various depths (0 to 30 cm) were collected from four forest types (transformed from broadleaved forests (BMF) to combined coniferous broadleaved (CBMF), Chinese fir (FF), and bamboo forests (BF)) to determine the impacts of forest conversion on the physical and chemical properties of soil, water-stable soil aggregates, and aggregate-associated humic substances. The results showed that forest conversion had no effects on the soil’s physical properties, or the humic substances in bulk soil, but had significant effects on soil aggregates. In addition, the conversion of broadleaved forest to Chinese fir forest increased the soil stability, and to bamboo forest, decreased the soil stability. Finally, the soil’s physicochemical properties were closely related to aggregate-associated humic substances. In summary, specific forest management measures should be applied to strengthen the positive impacts and reduce the negative impacts associated with forest conversion.
- Open Access
Effect of Forest Management Operations on Aggregate-Associated SOC Dynamics Using a 137Cs Tracing Method
Although forest conversions have long been a focus in carbon (C) research, the relationship between soil erosion and the dynamic change of soil organic carbon (SOC) has not been well-quantified. The objective of this study was to investigate the effects of converting CBF (coniferous and broad-leaved mixed forests) to economic forests, including CF (chestnut forest), HF (hawthorn forest), and AF (apple forest), on the soil structure and nutrient loss in the Huaibei Rocky Mountain Areas, China. A 137Cs tracer method was used to provide soil erosion data in order to quantify the loss of aggregate-associated SOC. The results showed that forest management operations caused macro-aggregates to decrease by 1.69% in CF, 4.52% in AF, and 3.87% in HF. Therefore, the stability of aggregates was reduced. The SOC contents in each aggregate size decreased significantly after forest conversion, with the largest decreases occurring in AF. We quantified the loss of 0.15, 0.38, and 0.31 Mg hm−2 of aggregate-associated SOC after conversion from CBF to CF, AF, and HF, respectively. These results suggest that forest management operations have a negative impact on soil quality and fertility. CF has better vegetation coverage and less human interference, making it more prominent among the three economic forests species. Therefore, when developing forest management operations, judicious selection of tree varieties and appropriate management practices are extremely critical. In addition, measures should be taken to increase surface cover to reduce soil erosion and achieve sustainable development of economic forests.
Open AccessEffect of Forest Management Operations on Aggregate-Associated SOC Dynamics Using a 137Cs Tracing Method
Although forest conversions have long been a focus in carbon (C) research, the relationship between soil erosion and the dynamic change of soil organic carbon (SOC) has not been well-quantified. The objective of this study was to investigate the effects of converting CBF (coniferous and broad-leaved mixed forests) to economic forests, including CF (chestnut forest), HF (hawthorn forest), and AF (apple forest), on the soil structure and nutrient loss in the Huaibei Rocky Mountain Areas, China. A 137Cs tracer method was used to provide soil erosion data in order to quantify the loss of aggregate-associated SOC. The results showed that forest management operations caused macro-aggregates to decrease by 1.69% in CF, 4.52% in AF, and 3.87% in HF. Therefore, the stability of aggregates was reduced. The SOC contents in each aggregate size decreased significantly after forest conversion, with the largest decreases occurring in AF. We quantified the loss of 0.15, 0.38, and 0.31 Mg hm−2 of aggregate-associated SOC after conversion from CBF to CF, AF, and HF, respectively. These results suggest that forest management operations have a negative impact on soil quality and fertility. CF has better vegetation coverage and less human interference, making it more prominent among the three economic forests species. Therefore, when developing forest management operations, judicious selection of tree varieties and appropriate management practices are extremely critical. In addition, measures should be taken to increase surface cover to reduce soil erosion and achieve sustainable development of economic forests.
- Open Access
- 29 January 2020
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 21 (3) , 861
Comparative Transcriptome Analysis of Different Dendrobium Species Reveals Active Ingredients-Related Genes and Pathways
Dendrobium is widely used in traditional Chinese medicine, which contains many kinds of active ingredients. In recent years, many Dendrobium transcriptomes have been sequenced. Hence, weighted gene co-expression network analysis (WGCNA) was used with the gene expression profiles of active ingredients to identify the modules and genes that may associate with particular species and tissues. Three kinds of Dendrobium species and three tissues were sampled for RNA-seq to generate a high-quality, full-length transcriptome database. Based on significant changes in gene expression, we constructed co-expression networks and revealed 19 gene modules. Among them, four modules with properties correlating to active ingredients regulation and biosynthesis, and several hub genes were selected for further functional investigation. This is the first time the WGCNA method has been used to analyze Dendrobium transcriptome data. Further excavation of the gene module information will help us to further study the role and significance of key genes, key signaling pathways, and regulatory mechanisms between genes on the occurrence and development of medicinal components of Dendrobium.
- 29 January 2020
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 21 (3) , 861
Open AccessComparative Transcriptome Analysis of Different Dendrobium Species Reveals Active Ingredients-Related Genes and Pathways
Dendrobium is widely used in traditional Chinese medicine, which contains many kinds of active ingredients. In recent years, many Dendrobium transcriptomes have been sequenced. Hence, weighted gene co-expression network analysis (WGCNA) was used with the gene expression profiles of active ingredients to identify the modules and genes that may associate with particular species and tissues. Three kinds of Dendrobium species and three tissues were sampled for RNA-seq to generate a high-quality, full-length transcriptome database. Based on significant changes in gene expression, we constructed co-expression networks and revealed 19 gene modules. Among them, four modules with properties correlating to active ingredients regulation and biosynthesis, and several hub genes were selected for further functional investigation. This is the first time the WGCNA method has been used to analyze Dendrobium transcriptome data. Further excavation of the gene module information will help us to further study the role and significance of key genes, key signaling pathways, and regulatory mechanisms between genes on the occurrence and development of medicinal components of Dendrobium.