Gintautas Daunys

This study investigates the use of pollen elastically scattered light images for species identification. The aim was to identify the best recognition algorithms for pollen classification based on the scattering images. A series of laboratory experiments with a Rapid-E device of Plair S.A. was conducted collecting scattering images and fluorescence spectra from pollen of 15 plant genera. The collected scattering data were supplied to 32 different setups of 8 computer vision models based on deep neural networks. The models were trained to classify the pollen types, and their performance was compared for the test sub-samples withheld from the training. Evaluation showed that most of the tested computer vision models convincingly outperform the basic convolutional neural network used in our previous studies: the accuracy gain was approaching 10% for best setups. The models of the Weakly Supervised Object Detection approach turned out to be the most accurate, but also slow. However, even the best setups still did not provide sufficient recognition accuracy barely reaching 65%–70% in the repeated tests. They also showed many false positives when applied to real-life time series collected by Rapid-E. Similar to the previous studies, fusion of the new scattering models with the fluorescence-based identification demonstrated almost 15% higher skills than either of the approaches alone reaching 77–83% of the overall classification accuracy.

Airborne allergenic pollen affects a significant part of the population and the information on pollen load is a valuable tool for public health prevention. The messages should be provided in a form easily understandable for the population. The study provides new insight for the categorisation of pollen load by defining thresholds solely from aerobiological data. Using the long-term airborne pollen data of Corylus, Alnus, Betula, Poaceae, and Artemisia have been evaluated the regionality of pollen concentrations in Lithuania. SPIn and peak values of the main pollen season highlighted as regionality indicators. The largest differences between stations were found in the cases of Corylus and Artemisia.The principle enabling a group of pollen concentrations into levels has been analysed based on retrospective aerobiological data of five pollen types. Thresholds were determined by employing the lowest peak value of the pollen season and applying the 25% principle for selected pollen types. The results were verified by performing associations of defined thresholds with retrospective morbidity data of allergic rhinitis and allergic asthma in Lithuania. Determined pollen thresholds can be used in epidemiological studies requiring associations with pollen concentration. Thresholds could also complement air quality information by integrating pollen load data into public messages or contribute to the development of mHealth systems.

Automatically operating particle detection devices generate valuable data, but their use in routine aerobiology needs to be harmonized. The growing network of researchers using automatic pollen detectors has the challenge to develop new data processing systems, best suited for identification of pollen or spore from bioaerosol data obtained near-real-time. It is challenging to recognise all the particles in the atmospheric bioaerosol due to their diversity. In this study, we aimed to find the natural groupings of pollen data by using cluster analysis, with the intent to use these groupings for further interpretation of real-time bioaerosol measurements. The scattering and fluorescence data belonging to 29 types of pollen and spores were first acquired in the laboratory using Rapid-E automatic particle detector. Neural networks were used for primary data processing, and the resulting feature vectors were clustered for scattering and fluorescence modality. Scattering clusters results showed that pollen of the same plant taxa associates with the different clusters corresponding to particle shape and size properties. According to fluorescence clusters, pollen grouping highlighted the possibility to differentiate Dactylis and Secale genera in the Poaceae family. Fluorescent clusters played a more important role than scattering for separating unidentified fluorescent particles from tested pollen. The proposed clustering method aids in reducing the number of false-positive errors.

Alnus glutinosa is an important woody plant in Lithuanian forest ecosystems. Knowledge of fluorescence properties of black alder pollen is necessary for scientific and practical purposes. By the results of the study, we aimed to evaluate possibilities of identifying Alnus glutinosa pollen fluorescence properties by modeling ozone effect and applying two different fluorescence-based devices. To implement the experiments, black alder pollen was collected in a typical habitat during the annual flowering period in 2018–2019. There were three groups of experimental variants, which differed in the duration of exposure to ozone, conditions of pollen storage before the start of the experiment, and the exposure time. Data for pollen fluorescence analysis were collected using two methods. The microscopy method was used in order to evaluate the possibility of employing image analysis systems for investigation of pollen fluorescence. The second data collection method is related to an automatic device identifying pollen in real time, which uses the fluorescence method in the pollen recognition process. Data were assessed employing image analysis and principal component analysis (PCA) methods. Digital images of ozone-exposed pollen observed under the fluorescence microscope showed the change of the dominant green colour toward the blue spectrum. Meanwhile, the automatic detector detects more pollen whose fluorescence is at the blue light spectrum. It must be noted that assessing pollen fluorescence several months after exposure to ozone, no effect of ozone on fluorescence remains.

Alnus glutinosa is important woody plant in Lithuanian forest ecosystems. Knowledge of fluorescence properties of black alder pollen is necessary for scientific and practical purposes. By the results of the study we aimed to evaluate possibilities of identifying Alnus glutinosa pollen fluorescence properties by modeling ozone effect and applying two different fluorescence-based devices. To implement experiments, black alder pollen was collected in a typical habitat during the annual flowering period in 2018-2019. There were three groups of experimental variants, which differed in the duration of exposure to ozone, conditions of pollen storage before the start of the experiment, and the experiment start time. Data for pollen fluorescence analysis were collected using two methods. The microscopy method was used in order to evaluate the possibility of employing image analysis systems for investigation of pollen fluorescence. The second data collection method is related to the automatic device identifying pollen in real-time, which uses the fluorescence method in the pollen recognition process. Data were assessed employing image analysis and principal component analysis (PCA) methods. Digital images of ozone-exposed pollen observed under the fluorescence microscope showed the change of the dominant green colour towards the blue spectrum. Meanwhile, the automatic detector detects more pollen whose fluorescence is at the blue light spectrum. It must be noted that assessing pollen fluorescence several months after exposure to ozone, no effect of ozone on fluorescence remains.