KIKentaro K. Ishii

Kentaro K. Ishii

*This is an algorithmically generated author record based on publicly available information.

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Previous Organizations / Institutes

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Kentaro K. Ishii has a total of 78 co-authors. Here are the top co-authors by number of shared publications:


Latest Publications

  • Open Access

    A cholinergic eligibility trace facilitates amygdala plasticity in flavour avoidance learning

    by Weston Fleming, Jordan L. Pauli, Kentaro K. Ishii, Marta Trzeciak, Cassidy T. Burke, Sekun Park, Ruohe Liu, Adam G. Gordon, Larry S. Zweifel, Richard D. Palmiter, et al.

    Summary: When an animal feels ill after consumption of a novel food, it rapidly learns to avoid this food in the future, a form of learning termed conditioned flavour avoidance (CFA). Postingestive malaise often occurs long after consumption, necessitating a neural mechanism that can facilitate plasticity between temporally distant events. Neuromodulators, acting through G-protein-coupled receptors (GPCRs) that can influence neuronal excitability on extended timescales, may facilitate this process. The projection of parabrachial (PB) Calca neurons to the central amygdala (CeA) promotes formation of CFA. Here, we demonstrate that these neurons overlap with a PB population that releases the neuromodulator acetylcholine (ACh) in the CeA during both consumption of a novel solution and subsequent visceral malaise, consistent with a role in CFA acquisition. Calcium imaging in brain slices reveals that ACh widely activates CeA neurons and enhances glutamatergic responsivity on a timescale consistent with CFA learning. CRISPR-Cas9-mediated genetic knockdown and optogenetics demonstrate that ACh from PB facilitates CFA acquisition. Loss of ACh signalling to CeA blocks key signatures of CFA-associated plasticity. Together, these data reveal that cholinergic input from PB to central amygdala is a critical neuromodulatory signal that links activity over long timespans to facilitate associative learning.

  • Open Access

    Subcortical recruitment dissociates isoflurane emergence from distinct wakeful states in mice

    by C Neiswanger, LK MacMillen, Ad Murry, Er Szelenyi, J Navarrete, Mhc Nota, H Lazaro, Cc Shin, J Zhang, Ea Apley, et al.

    Emergence from general anesthesia, defined by a recovery of consciousness to the wakeful state, is a clinically consequential state transition that remains a passive process dependent on drug clearance. Despite the critical use of anesthesia, the neural circuitry underlying behavioral recovery remains poorly defined. Here, we map whole-brain neural activity during emergence from isoflurane anesthesia in mice using Fos immunolabeling, tissue clearing, and light-sheet microscopy. This approach enables unbiased quantification of neural activity at cellular resolution across the intact whole brain and supports subsequent network analysis. Rather than resembling wakefulness, emergence exhibits widespread cortical suppression alongside selective activation of discrete subcortical nuclei. This pattern of activity includes both previously implicated arousal-related regions and lesser-studied structures linked to respiratory, autonomic, interoceptive, and cerebellar function. By comparing emergence to two behaviorally distinct wakeful control states, we find that control state selection substantially shapes interpretation of whole-brain activity maps. This establishes dual-state comparisons as a broadly useful strategy for state-dependent circuit mapping. Functional network analysis further elucidates candidate central regions that strongly covary together during emergence, with the most integrated region being the ventral orbital cortex. This approach allows for targeted causal investigation, linking brain-wide circuit discovery with future hypothesis-driven mechanistic interrogation. Together, we find that emergence from isoflurane anesthesia reflects selective subcortical recruitment rather than broad global reactivation toward wakefulness. Significance Statement: Millions of people undergo general anesthesia each year. While anesthetic unconsciousness is induced rapidly, emergence from altered consciousness is unpredictable. Neural mechanisms that underlie behavioral emergence remain poorly defined. Using whole-brain Fos mapping at cellular resolution, we found that emergence from isoflurane anesthesia is characterized by widespread cortical suppression alongside selective activation of discrete subcortical, autonomic, hindbrain, and cerebellar nuclei. This selective systems-level activity pattern identifies behavioral emergence as more than a simple global return toward wakefulness and highlights underappreciated neural circuitry involved in post-anesthetic recovery. Network analysis of the Fos maps further identifies candidate regions for targeted causal investigation of emergence-related regions.

  • Open Access

    Hierarchical and Spatial Mapping of Whole-Brain c-Fos Activity Reveals Distinct Opioid and Withdrawal Neuronal Ensembles

    by Kentaro K Ishii, Yizhe Zhang, Lynn Ren, Alex De Lecea, Srishti Bakshi, Ariyanna Haygood, Sakura Chujo, Hannah P. Stevenson, Evan Schwartz, Zhe Charles Zhou, et al.

    Summary: How opioid exposure and withdrawal states shape brain activity at the systems and circuit level remains poorly understood. Here, we use whole-brain, cellular-resolution c-Fos mapping to define brain-wide activity patterns and neuronal ensembles associated with morphine administration and withdrawal. To account for the brain’s anatomically nested structure, we developed and applied a hierarchical statistical framework that detects region-specific changes in activity and outperforms conventional methods that treat brain regions as individual, unrelated units. These distributed signals formed ensembles with consistent and anatomically structured patterns of activity, both within subregions and across multiple connected brain areas. By combining TRAP2-based activity tagging with acute whole-brain c-Fos staining, we identified morphine- and withdrawal-activated ensembles and found that they are largely non-overlapping at the single-cell level, even within the same brain region. Integration with existing spatial transcriptomics datasets identified molecular markers for these state-specific ensembles in key brain areas such as the nucleus of accumbens, amygdala and ventral tegmental areas. Lastly, by integrating Allen mouse whole-brain transcriptional datasets, we identified the molecular identity of the morphine- administration and withdrawal ensembles. These findings define dissociable neuronal ensembles that encode opposing drug states and introduce a scalable framework for linking whole-brain activity to molecular and circuit-level mechanisms. Highlights: Whole-brain neural activity mapping identifies the regional and spatial difference of morphine-administration and withdrawal neuronal ensembles. BRANCH, a hierarchical statistical testing framework, offers increased sensitivity and anatomical interpretability for whole-brain datasets. TRAP2-based activity tagging reveals brain-wide separation of acute morphine and withdrawal ensembles at the cellular level. A systematic analysis of the whole brain neural activity data combined with spatial transcriptomic data revealed molecular features of opioid-related neural ensembles.


  • Open Access

    Post-ejaculatory inhibition of female sexual drive via heterogeneous neuronal ensembles in the medial preoptic area

    by Kentaro K Ishii, Koichi Hashikawa, Jane Chea, Shihan Yin, Rebecca Erin Fox, Suyang Kan, Meha Shah, Zhe Charles Zhou, Jovana Navarrete, Alexandria D Murry, et al.

    Male ejaculation acutely suppresses sexual motivation in male mice. In contrast, relatively little is known about how male ejaculation affects sexual motivation and sexual behavior in female mice. How the brain responds to the completion of mating is also unclear. Here, by using a self-paced mating assay, we first demonstrate that female mice show decreased sexual motivation acutely after experiencing male ejaculation. By using brain-wide analysis of activity-dependent labeling, we next pin-pointed the medial preoptic area as a brain region strongly activated during the post-ejaculatory period. Furthermore, using freely moving in vivo calcium imaging to compare the neural activity of inhibitory and excitatory neurons in the medial preoptic area, we revealed that a subset of the neurons in this region responds significantly and specifically to male ejaculation but not to female-to-male sniffing or to male mounting. While there were excitatory and inhibitory neurons that showed increased response to male ejaculation, the response magnitude as well as the proportion of neurons responding to the event was significantly larger in the inhibitory neuron population. Next, by unbiased classification of their responses, we also found a subpopulation of neurons that increase their activity late after the onset of male ejaculation. These neurons were all inhibitory indicating that male ejaculation induces a prolonged inhibitory activity in the medial preoptic area. Lastly, we found that chemogenetic activation of medial preoptic area neurons that were active during the post-ejaculatory period, but not during appetitive or consummatory periods, were sufficient to suppress female sexual motivation. Together, our data illuminate the importance of the medial preoptic area as a brain node which encodes a negative signal that sustains a low sexual motivation state after the female mice experience ejaculation.


  • Open Access

    Post-ejaculatory Inhibition of Female Sexual Drive via Heterogeneous Neuronal Ensembles in the Medial Preoptic Area

    by Kentaro K Ishii, Koichi Hashikawa, Jane Chea, Shihan Yin, Rebecca Erin Fox, Suyang Kan, Meha Shah, Charles Zhou, Jovana Navarrete, Alexandria D Murry, et al.

    Summary Male ejaculation acutely suppresses sexual motivation in male mice. In contrast, relatively little is known about how male ejaculation affects sexual motivation and sexual behavior in female mice. How the brain responds to completion of mating is also unclear. Here, by using self-paced mating assay, we first demonstrate that female mice show decreased sexual motivation acutely after experiencing male ejaculation. By using brain-wide analysis of activity-dependent labeling, we next pinpointed the medial preoptic area as a brain region strongly activated during the post-ejaculatory period. Furthermore, using freely moving in vivo calcium imaging to compare neural activity of inhibitory and excitatory neurons in the medial preoptic area, we revealed that a subset of the neurons in this region respond significantly and specifically to male ejaculation but not to female-to-male sniffing or to male mounting. While there were excitatory and inhibitory neurons that showed increased response to male ejaculation, the response magnitude as well as the proportion of neurons responding to the event was significantly larger in the inhibitory neuron population. Next, by unbiased classification of their responses, we also found a subpopulation of neurons that increase their activity late after the onset of male ejaculation. These neurons were all inhibitory indicating that male ejaculation induces a prolonged inhibitory activity in the medial preoptic area. Lastly, we found that chemogenetic activation of medial preoptic area neurons that were active during post-ejaculatory period, but not during appetitive or consummatory periods, were sufficient to suppress female sexual motivation. Together, our data illuminate the importance of medial preoptic area as a brain node which encodes a negative signal that sustains low sexual motivation state after the female mice experience ejaculation.


  • Open Access

    Post-ejaculatory Inhibition of Female Sexual Drive via Heterogeneous Neuronal Ensembles in the Medial Preoptic Area

    by Kentaro K Ishii, Koichi Hashikawa, Jane Chea, Shihan Yin, Rebecca Erin Fox, Suyang Kan, Meha Shah, Charles Zhou, Jovana Navarrete, Alexandria D. Murry, et al.

    SUMMARY: Male ejaculation acutely suppresses sexual motivation in male mice. In contrast, relatively little is known about how male ejaculation affects sexual motivation and sexual behavior in female mice. How the brain responds to completion of mating is also unclear. Here, by using self-paced mating assay, we first demonstrate that female mice show decreased sexual motivation acutely after experiencing male ejaculation. By using brain-wide analysis of activity-dependent labeling, we next pinpointed the medial preoptic area as a brain region strongly activated during the post-ejaculatory period. Furthermore, using freely moving in vivo calcium imaging to compare neural activity of inhibitory and excitatory neurons in the medial preoptic area, we revealed that a subset of the neurons in this region respond significantly and specifically to male ejaculation but not to female-to-male sniffing or to male mounting. While there were excitatory and inhibitory neurons that showed increased response to male ejaculation, the response magnitude as well as the proportion of neurons responding to the event was significantly larger in the inhibitory neuron population. Next, by unbiased classification of their responses, we also found a subpopulation of neurons that increase their activity late after the onset of male ejaculation. These neurons were all inhibitory indicating that male ejaculation induces a prolonged inhibitory activity in the medial preoptic area. Lastly, we found that chemogenetic activation of medial preoptic area neurons that were active during post-ejaculatory period, but not during appetitive or consummatory periods, were sufficient to suppress female sexual motivation. Together, our data illuminate the importance of medial preoptic area as a brain node which encodes a negative signal that sustains low sexual motivation state after the female mice experience ejaculation. Highlights: Female mice show decreased sexual motivation in the post-ejaculatory period. A subset of MPOA neurons in female respond specifically to male ejaculation. Male-ejaculation evokes persistent activity in MPOA inhibitory neurons in females. Activation of a subset of MPOA neurons is sufficient to suppress female sexual motivation.


  • Open Access

    Hemoglobin in the blood acts as a chemosensory signal via the mouse vomeronasal system

    by Takuya Osakada, Takayuki Abe, Takumi Itakura, Hiromi Mori, Kentaro K. Ishii, Ryo Eguchi, Ken Murata, Kosuke Saito, Sachiko Haga-Yamanaka, Hiroko Kimoto, et al.

    The vomeronasal system plays an essential role in sensing various environmental chemical cues. Here we show that mice exposed to blood and, consequently, hemoglobin results in the activation of vomeronasal sensory neurons expressing a specific vomeronasal G protein-coupled receptor, Vmn2r88, which is mediated by the interaction site, Gly17, on hemoglobin. The hemoglobin signal reaches the medial amygdala (MeA) in both male and female mice. However, it activates the dorsal part of ventromedial hypothalamus (VMHd) only in lactating female mice. As a result, in lactating mothers, hemoglobin enhances digging and rearing behavior. Manipulation of steroidogenic factor 1 (SF1)-expressing neurons in the VMHd is sufficient to induce the hemoglobin-mediated behaviors. Our results suggest that the oxygen-carrier hemoglobin plays a role as a chemosensory signal, eliciting behavioral responses in mice in a state-dependent fashion.


  • Open Access

    Hypothalamic neuronal circuits regulating hunger-induced taste modification

    by Ou Fu, Yuu Iwai, Masataka Narukawa, Ayako W. Ishikawa, Kentaro K. Ishii, Ken Murata, Yumiko Yoshimura, Kazushige Touhara, Takumi Misaka, Yasuhiko Minokoshi, et al.

    The gustatory system plays a critical role in sensing appetitive and aversive taste stimuli for evaluating food quality. Although taste preference is known to change depending on internal states such as hunger, a mechanistic insight remains unclear. Here, we examine the neuronal mechanisms regulating hunger-induced taste modification. Starved mice exhibit an increased preference for sweetness and tolerance for aversive taste. This hunger-induced taste modification is recapitulated by selective activation of orexigenic Agouti-related peptide (AgRP)-expressing neurons in the hypothalamus projecting to the lateral hypothalamus, but not to other regions. Glutamatergic, but not GABAergic, neurons in the lateral hypothalamus function as downstream neurons of AgRP neurons. Importantly, these neurons play a key role in modulating preferences for both appetitive and aversive tastes by using distinct pathways projecting to the lateral septum or the lateral habenula, respectively. Our results suggest that these hypothalamic circuits would be important for optimizing feeding behavior under fasting.


  • Open Access

    Sexual rejection via a vomeronasal receptor-triggered limbic circuit

    by Takuya Osakada, Kentaro K. Ishii, Hiromi Mori, Ryo Eguchi, David M. Ferrero, Yoshihiro Yoshihara, Stephen D. Liberles, Kazunari Miyamichi, Kazushige Touhara

    Mating drive is balanced by a need to safeguard resources for offspring, yet the neural basis for negative regulation of mating remains poorly understood. In rodents, pheromones critically regulate sexual behavior. Here, we observe suppression of adult female sexual behavior in mice by exocrine gland-secreting peptide 22 (ESP22), a lacrimal protein from juvenile mice. ESP22 activates a dedicated vomeronasal receptor, V2Rp4, and V2Rp4 knockout eliminates ESP22 effects on sexual behavior. Genetic tracing of ESP22-responsive neural circuits reveals a critical limbic system connection that inhibits reproductive behavior. Furthermore, V2Rp4 counteracts a highly related vomeronasal receptor, V2Rp5, that detects the male sex pheromone ESP1. Interestingly, V2Rp4 and V2Rp5 are encoded by adjacent genes, yet couple to distinct circuits and mediate opposing effects on female sexual behavior. Collectively, our study reveals molecular and neural mechanisms underlying pheromone-mediated sexual rejection, and more generally, how inputs are routed through olfactory circuits to evoke specific behaviors.