Elvar Örn Jónsson
Research Subjects
Elvar Örn Jónsson has a total of 24 co-authors. Here are the top co-authors by number of shared publications:
- Hannes Jónsson
Science Institute and Faculty of Physical Sciences, University of Iceland, VR-III, Reykjavík 107, Iceland
12 shared publications - Asmus Ougaard Dohn
Department of Physics, Technical University of Denmark, Kongens Lyngby, Denmark
5 shared publications - Aleksei Vladimirovich Ivanov
Riverlane Ltd, St Andrews House, 59 St Andrews Street, Cambridge CB2 3BZ, U.K.
3 shared publications - Alejandro Peña-Torres
Science Institute and Faculty of Physical Sciences
2 shared publications - Gianluca Levi
Science Institute of the University of Iceland
2 shared publications Hannes Jonsson
Science Institute Faculty of Physical Sciences VR-III University of Iceland Reykjavík Iceland
2 shared publications
Latest Publications
- 24 March 2026
- Published by American Chemical Society (ACS) in Journal of Chemical Theory and Computation
- Vol. 22 (7) , 3260-3267
Orbital Optimization and Neural-Network-Assisted Configuration Interaction Calculations of Rydberg States
Rydberg excited states of molecules pose a challenge for electronic structure calculations because of their highly diffuse electron distribution. Even large and elaborate atomic basis sets tend to underrepresent the long-range tail, overly confining the Rydberg state. An approach is presented here where the molecular orbitals are variationally optimized for the excited state using a plane wave basis set in a Hartree-Fock calculation, followed by a configuration interaction calculation. The use of excited state optimized orbitals greatly enhances the convergence of the many-body calculation, as illustrated by a full configuration interaction calculation of the 2s Rydberg state of H2. A neural-network-based selective configuration interaction approach is then applied to calculations of 3s and 3p states of H2O and NH3. The obtained values of excitation energy are in close agreement with experimental measurements as well as previous many-body calculations where sufficiently diffuse atomic basis sets were used. Calculations using atomic basis sets lacking extra diffuse functions, such as aug-cc-pVTZ, give significantly higher estimates due to confinement of the Rydberg states.
- 24 March 2026
- Published by American Chemical Society (ACS) in Journal of Chemical Theory and Computation
- Vol. 22 (7) , 3260-3267
Orbital Optimization and Neural-Network-Assisted Configuration Interaction Calculations of Rydberg States
Rydberg excited states of molecules pose a challenge for electronic structure calculations because of their highly diffuse electron distribution. Even large and elaborate atomic basis sets tend to underrepresent the long-range tail, overly confining the Rydberg state. An approach is presented here where the molecular orbitals are variationally optimized for the excited state using a plane wave basis set in a Hartree-Fock calculation, followed by a configuration interaction calculation. The use of excited state optimized orbitals greatly enhances the convergence of the many-body calculation, as illustrated by a full configuration interaction calculation of the 2s Rydberg state of H2. A neural-network-based selective configuration interaction approach is then applied to calculations of 3s and 3p states of H2O and NH3. The obtained values of excitation energy are in close agreement with experimental measurements as well as previous many-body calculations where sufficiently diffuse atomic basis sets were used. Calculations using atomic basis sets lacking extra diffuse functions, such as aug-cc-pVTZ, give significantly higher estimates due to confinement of the Rydberg states.
- 4 June 2025
- Published by American Chemical Society (ACS) in The Journal of Physical Chemistry Letters
- Vol. 16 (23) , 5844-5854
Localized and Delocalized Charge Distribution in a Diamine Cation and Rydberg Excited State: A Challenging Test for Density Functionals
The balance between localized and delocalized electron distribution in the N,N'-dimethylpiperazine (DMP) molecule in the 3s Rydberg excited state and in the fully ionized DMP+ provides a valuable test of density functionals, in particular the weight of Fock exchange (FE) in hybrid functionals and the scaling of explicit orbital-based self-interaction correction (SIC) applied to less elaborate functionals. We present results of calculations using density functionals of all rungs of Jacob's ladder, ranging from LDA to the DM21 machine learned local hybrid as well as double hybrids. For DMP+, the commonly used hybrid functionals, such as PBE0(0.25) with FE weight of 0.25, as well as PBE0(0.32) with a weight of 0.32, only produce the more delocalized charge. The latter mimics the DM21 energy surface well. However, hybrid functionals with stronger FE, such as BHLYP and PBE0(0.50) as well as some double hybrid functionals, also produce local energy minima corresponding to localized charge. When full SIC is applied to the PBE functional, an energy surface analogous to hybrid functionals with an FE weight of 0.50 is obtained, while the scaling of SIC by 0.50, which has previously been shown to give improved atomization energy and band gap of solids, only produces the more delocalized charge. For the 3s Rydberg excited state of DMP, two types of configurations with a localized hole are obtained in calculations using the PBE0(0.32) functional, in addition to the delocalized hole, but only the latter is found with the PBE functional, showing that a significant reduction of the self-interaction error is needed in order to obtain agreement between density functional calculations and experimental measurements of the Rydberg state.
- 4 June 2025
- Published by American Chemical Society (ACS) in The Journal of Physical Chemistry Letters
- Vol. 16 (23) , 5844-5854
Localized and Delocalized Charge Distribution in a Diamine Cation and Rydberg Excited State: A Challenging Test for Density Functionals
The balance between localized and delocalized electron distribution in the N,N'-dimethylpiperazine (DMP) molecule in the 3s Rydberg excited state and in the fully ionized DMP+ provides a valuable test of density functionals, in particular the weight of Fock exchange (FE) in hybrid functionals and the scaling of explicit orbital-based self-interaction correction (SIC) applied to less elaborate functionals. We present results of calculations using density functionals of all rungs of Jacob's ladder, ranging from LDA to the DM21 machine learned local hybrid as well as double hybrids. For DMP+, the commonly used hybrid functionals, such as PBE0(0.25) with FE weight of 0.25, as well as PBE0(0.32) with a weight of 0.32, only produce the more delocalized charge. The latter mimics the DM21 energy surface well. However, hybrid functionals with stronger FE, such as BHLYP and PBE0(0.50) as well as some double hybrid functionals, also produce local energy minima corresponding to localized charge. When full SIC is applied to the PBE functional, an energy surface analogous to hybrid functionals with an FE weight of 0.50 is obtained, while the scaling of SIC by 0.50, which has previously been shown to give improved atomization energy and band gap of solids, only produces the more delocalized charge. For the 3s Rydberg excited state of DMP, two types of configurations with a localized hole are obtained in calculations using the PBE0(0.32) functional, in addition to the delocalized hole, but only the latter is found with the PBE functional, showing that a significant reduction of the self-interaction error is needed in order to obtain agreement between density functional calculations and experimental measurements of the Rydberg state.
- 20 May 2024
- Published by American Chemical Society (ACS) in The Journal of Physical Chemistry Letters
- Vol. 15 (21) , 5654-5658
Single-Atom Substituents in Copper Surfaces May Adsorb Multiple CO Molecules
Copper is a good CO2 electroreduction catalyst as products beyond CO form, but efficiency and selectivity is low. Experiments have shown that an admixture of other elements can help, and computational screening studies have pointed out various promising candidates based on the adsorption of a single CO molecule as a descriptor. Our calculations of CO adsorption on surfaces where a first row transition metal atom replaces a Cu atom show that multiple CO molecules, not just one, bind to the substitutional atom. For Fe, Co, and Ni atoms, a decrease in binding energy is found, but the reverse trend, namely, increasing bond strength, is found for V, Cr, and Mn and the first three CO molecules. Magnetic moment, charge, and position of the substitutional atom are also strongly affected by the CO adsorption in most cases. Magnetic moment is stepwise reduced to zero, and the outward displacement of the substitutional atom increased.
- 20 May 2024
- Published by American Chemical Society (ACS) in The Journal of Physical Chemistry Letters
- Vol. 15 (21) , 5654-5658
Single-Atom Substituents in Copper Surfaces May Adsorb Multiple CO Molecules
Copper is a good CO2 electroreduction catalyst as products beyond CO form, but efficiency and selectivity is low. Experiments have shown that an admixture of other elements can help, and computational screening studies have pointed out various promising candidates based on the adsorption of a single CO molecule as a descriptor. Our calculations of CO adsorption on surfaces where a first row transition metal atom replaces a Cu atom show that multiple CO molecules, not just one, bind to the substitutional atom. For Fe, Co, and Ni atoms, a decrease in binding energy is found, but the reverse trend, namely, increasing bond strength, is found for V, Cr, and Mn and the first three CO molecules. Magnetic moment, charge, and position of the substitutional atom are also strongly affected by the CO adsorption in most cases. Magnetic moment is stepwise reduced to zero, and the outward displacement of the substitutional atom increased.
- 18 April 2024
- Published by American Chemical Society (ACS) in The Journal of Physical Chemistry Letters
- Vol. 15 (17) , 4523-4530
Evidence of Sharp Transitions between Octahedral and Capped Trigonal Prism States of the Solvation Shell of the Aqueous Fe3+ Ion
The structure of the solvation shell of the aqueous Fe3+ ion has been a subject of controversy due to discrepancies between experiments and different levels of theory. We address this issue by performing simulations for a wide range of ion concentrations, using various potential energy functions, supplemented by density functional theory calculations of selected configurations. The solvation shell undergoes abrupt transitions between two states: a hexacoordinated octahedral (OH) state and a capped trigonal prism (CTP) state with 7-fold coordination. The lifetime of these states is dependent on concentration. In dilute FeCl3 solutions, the lifetimes of both are similar (approximate to 1 ns). However, the lifetime of the OH state increases with ion concentration, while that of the CTP state decreases slightly. When a uniform negative background charge is used instead of explicit counterions, the lifetime of the OH state is greatly overestimated. These findings underscore the need for further experimental measurements and higher-level simulations.
- 18 April 2024
- Published by American Chemical Society (ACS) in The Journal of Physical Chemistry Letters
- Vol. 15 (17) , 4523-4530
Evidence of Sharp Transitions between Octahedral and Capped Trigonal Prism States of the Solvation Shell of the Aqueous Fe3+ Ion
The structure of the solvation shell of the aqueous Fe3+ ion has been a subject of controversy due to discrepancies between experiments and different levels of theory. We address this issue by performing simulations for a wide range of ion concentrations, using various potential energy functions, supplemented by density functional theory calculations of selected configurations. The solvation shell undergoes abrupt transitions between two states: a hexacoordinated octahedral (OH) state and a capped trigonal prism (CTP) state with 7-fold coordination. The lifetime of these states is dependent on concentration. In dilute FeCl3 solutions, the lifetimes of both are similar (approximate to 1 ns). However, the lifetime of the OH state increases with ion concentration, while that of the CTP state decreases slightly. When a uniform negative background charge is used instead of explicit counterions, the lifetime of the OH state is greatly overestimated. These findings underscore the need for further experimental measurements and higher-level simulations.
- Open Access
- 15 December 2022
- Published by American Chemical Society (ACS) in The Journal of Physical Chemistry Letters
- Vol. 13 (50) , 11831-11836
New Insights into the Volume Isotope Effect of Ice Ih from Polarizable Many-Body Potentials
The anomalous volume isotope effect (VIE) of ice Ih is calculated and analyzed based on the quasi-harmonic approximation to account for nuclear quantum effects in the Helmholtz free energy. While a lot of recently developed polarizable many-body potential functions give a normal VIE contrary to experimental results, we find that one of them, MB-pol, yields the anomalous VIE in good agreement with the most recent high-resolution neutron diffraction measurements-better than DFT calculations. The short-range three-body terms in the MB-pol function, which are fitted to CCSD(T) calculations, are found to have a surprisingly large influence. A vibrational mode group decomposition of the zero-point pressure together with a hitherto unconsidered benchmark value for the intramolecular stretching modes of H2O ice Ih obtained from Raman spectroscopy data unveils the reason for the VIE: a delicate competition between the latter and the librations.
- 15 December 2022
- Published by American Chemical Society (ACS) in The Journal of Physical Chemistry Letters
- Vol. 13 (50) , 11831-11836
Open AccessNew Insights into the Volume Isotope Effect of Ice Ih from Polarizable Many-Body Potentials
The anomalous volume isotope effect (VIE) of ice Ih is calculated and analyzed based on the quasi-harmonic approximation to account for nuclear quantum effects in the Helmholtz free energy. While a lot of recently developed polarizable many-body potential functions give a normal VIE contrary to experimental results, we find that one of them, MB-pol, yields the anomalous VIE in good agreement with the most recent high-resolution neutron diffraction measurements-better than DFT calculations. The short-range three-body terms in the MB-pol function, which are fitted to CCSD(T) calculations, are found to have a surprisingly large influence. A vibrational mode group decomposition of the zero-point pressure together with a hitherto unconsidered benchmark value for the intramolecular stretching modes of H2O ice Ih obtained from Raman spectroscopy data unveils the reason for the VIE: a delicate competition between the latter and the librations.
- 17 November 2022
- Published by American Chemical Society (ACS) in Journal of Chemical Theory and Computation
- Vol. 18 (12) , 7528-7543
Transferable Potential Function for Flexible H2O Molecules Based on the Single-Center Multipole Expansion
A potential function is presented for describing a system of flexible H2O molecules based on the single-center multipole expansion (SCME) of the electrostatic interaction. The model, referred to as SCME/f, includes the variation of the molecular quadrupole moment as well as the dipole moment with changes in bond length and angle so as to reproduce results of high-level electronic structure calculations. The multipole expansion also includes fixed octupole and hexadecapole moments, as well as anisotropic dipole-dipole, dipole-quadrupole, and quadrupole-quadru-pole polarizability tensors. The model contains five adjustable parameters related to the repulsive interaction and damping functions in the electrostatic and dispersion interactions. Their values are adjusted to reproduce the lowest energy isomers of small clusters, (H2O)n with n = 2-6, as well as measured properties of the ice Ih crystal. Subsequent calculations of the energy difference between the various isomer configurations of the clusters show that SCME/f gives good agreement with results of electronic structure calculations and represents a significant improvement over the previously presented rigid SCME potential function. Analysis of the vibrational frequencies of the clusters and structural properties of ice Ih crystal show the importance of accurately describing the variation of the quadrupole moment with molecular structures.
- 17 November 2022
- Published by American Chemical Society (ACS) in Journal of Chemical Theory and Computation
- Vol. 18 (12) , 7528-7543
Transferable Potential Function for Flexible H2O Molecules Based on the Single-Center Multipole Expansion
A potential function is presented for describing a system of flexible H2O molecules based on the single-center multipole expansion (SCME) of the electrostatic interaction. The model, referred to as SCME/f, includes the variation of the molecular quadrupole moment as well as the dipole moment with changes in bond length and angle so as to reproduce results of high-level electronic structure calculations. The multipole expansion also includes fixed octupole and hexadecapole moments, as well as anisotropic dipole-dipole, dipole-quadrupole, and quadrupole-quadru-pole polarizability tensors. The model contains five adjustable parameters related to the repulsive interaction and damping functions in the electrostatic and dispersion interactions. Their values are adjusted to reproduce the lowest energy isomers of small clusters, (H2O)n with n = 2-6, as well as measured properties of the ice Ih crystal. Subsequent calculations of the energy difference between the various isomer configurations of the clusters show that SCME/f gives good agreement with results of electronic structure calculations and represents a significant improvement over the previously presented rigid SCME potential function. Analysis of the vibrational frequencies of the clusters and structural properties of ice Ih crystal show the importance of accurately describing the variation of the quadrupole moment with molecular structures.
- 7 November 2022
- Published by American Chemical Society (ACS) in The Journal of Physical Chemistry B
- Vol. 126 (45) , 9339-9348
Polarizable Force Field for Acetonitrile Based on the Single-Center Multipole Expansion
A polarizable potential function describing the interaction between acetonitrile molecules is introduced. The molecules are described as rigid and linear, with three mass sites corresponding to the CH3 group (methyl, Me), the central carbon atom (C), and the nitrogen atom (N). The electrostatic interaction is represented using a single-center multipole expansion as has been done previously for H2O [Wikfeldt et al., Phys. Chem. Chem. Phys. 15, 16542 (2013)], by including multipole moments from dipole up to and including hexadecapole, as well as anisotropic dipole-dipole, dipole-quadrupole, and quadrupole-quadrupole polarizability tensors. The model is free of point charges. The non-electrostatic part is described in a pair-wise fashion by a Born-Mayer repulsion and damped dispersion attraction. The potential function is parameterized to fit the interaction energy of small (CH3CN)n, n = 2-6, clusters calculated using the PBE0 hybrid functional with an additional atomic many-body dispersion contribution. The parameterized potential function is found to compare well with results of the electronic structure calculations of dissociation curves for different dimer orientations and cohesive properties (the equilibrium volume, cohesive energy, and the bulk modulus) of the α-phase of acetonitrile crystal. The average value of the molecular dipole moment obtained in the α-phase is 5.53 D, corresponding to ca. 40% increase as compared to the dipole moment of an isolated acetonitrile molecule, 3.92 D. The calculated densities of solid and liquid acetonitrile turn out to be 8-10% higher than experimental values. This appears to be caused by an overestimate of the atomic many-body dispersion interaction in the density functional calculations used as input in the parametrization of the potential function.
- 7 November 2022
- Published by American Chemical Society (ACS) in The Journal of Physical Chemistry B
- Vol. 126 (45) , 9339-9348
Polarizable Force Field for Acetonitrile Based on the Single-Center Multipole Expansion
A polarizable potential function describing the interaction between acetonitrile molecules is introduced. The molecules are described as rigid and linear, with three mass sites corresponding to the CH3 group (methyl, Me), the central carbon atom (C), and the nitrogen atom (N). The electrostatic interaction is represented using a single-center multipole expansion as has been done previously for H2O [Wikfeldt et al., Phys. Chem. Chem. Phys. 15, 16542 (2013)], by including multipole moments from dipole up to and including hexadecapole, as well as anisotropic dipole-dipole, dipole-quadrupole, and quadrupole-quadrupole polarizability tensors. The model is free of point charges. The non-electrostatic part is described in a pair-wise fashion by a Born-Mayer repulsion and damped dispersion attraction. The potential function is parameterized to fit the interaction energy of small (CH3CN)n, n = 2-6, clusters calculated using the PBE0 hybrid functional with an additional atomic many-body dispersion contribution. The parameterized potential function is found to compare well with results of the electronic structure calculations of dissociation curves for different dimer orientations and cohesive properties (the equilibrium volume, cohesive energy, and the bulk modulus) of the α-phase of acetonitrile crystal. The average value of the molecular dipole moment obtained in the α-phase is 5.53 D, corresponding to ca. 40% increase as compared to the dipole moment of an isolated acetonitrile molecule, 3.92 D. The calculated densities of solid and liquid acetonitrile turn out to be 8-10% higher than experimental values. This appears to be caused by an overestimate of the atomic many-body dispersion interaction in the density functional calculations used as input in the parametrization of the potential function.
- 28 April 2022
- Published by American Chemical Society (ACS) in The Journal of Physical Chemistry Letters
- Vol. 13 (18) , 3990-3999
Variational Density Functional Calculations of Excited States: Conical Intersection and Avoided Crossing in Ethylene Bond Twisting
Theoretical studies of photochemical processes require a description of the energy surfaces of excited electronic states, especially near degeneracies, where transitions between states are most likely. Systems relevant to photochemical applications are typically too large for high-level multireference methods, and while time-dependent density functional theory (TDDFT) is efficient, it can fail to provide the required accuracy. A variational, time-independent density functional approach is applied to the twisting of the double bond and pyramidal distortion in ethylene, the quintessential model for photochemical studies. By allowing for symmetry breaking, the calculated energy surfaces exhibit the correct topology around the twisted-pyramidalized conical intersection even when using a semilocal functional approximation, and by including explicit self-interaction correction, the torsional energy curves are in close agreement with published multireference results. The findings of the present work point to the possibility of using a single determinant time-independent density functional approach to simulate nonadiabatic dynamics, even for large systems where multireference methods are impractical and TDDFT is often not accurate enough.
- 28 April 2022
- Published by American Chemical Society (ACS) in The Journal of Physical Chemistry Letters
- Vol. 13 (18) , 3990-3999
Variational Density Functional Calculations of Excited States: Conical Intersection and Avoided Crossing in Ethylene Bond Twisting
Theoretical studies of photochemical processes require a description of the energy surfaces of excited electronic states, especially near degeneracies, where transitions between states are most likely. Systems relevant to photochemical applications are typically too large for high-level multireference methods, and while time-dependent density functional theory (TDDFT) is efficient, it can fail to provide the required accuracy. A variational, time-independent density functional approach is applied to the twisting of the double bond and pyramidal distortion in ethylene, the quintessential model for photochemical studies. By allowing for symmetry breaking, the calculated energy surfaces exhibit the correct topology around the twisted-pyramidalized conical intersection even when using a semilocal functional approximation, and by including explicit self-interaction correction, the torsional energy curves are in close agreement with published multireference results. The findings of the present work point to the possibility of using a single determinant time-independent density functional approach to simulate nonadiabatic dynamics, even for large systems where multireference methods are impractical and TDDFT is often not accurate enough.
- 26 April 2021
- Published by American Chemical Society (ACS) in The Journal of Physical Chemistry Letters
- Vol. 12 (17) , 4240-4246
Mn Dimer Can Be Described Accurately with Density Functional Calculations When Self-Interaction Correction Is Applied
Qualitatively incorrect results are obtained for the Mn dimer in density functional theory calculations using the generalized gradient approximation (GGA), and similar results are obtained from local density and meta-GGA functionals. The coupling is predicted to be ferromagnetic rather than antiferromagnetic, and the bond between the atoms is predicted to be an order of magnitude too strong and approximately an Ångstrøm too short. Explicit, self-interaction correction (SIC) applied to a commonly used GGA energy functional, however, provides close agreement with both experimental data and high-level, multireference wave function calculations. These results show that the failure is not due to a strong correlation but rather the single electron self-interaction that is necessarily introduced in estimates of the classical Coulomb and exchange-correlation energy when only the total electron density is used as the input. The corrected functional depends explicitly on the orbital densities and can, therefore, avoid the introduction of a self-Coulomb interaction. The error arises because of an overstabilization of bonding d-states in the minority spin channel resulting from an overestimate of the d-electron self-interaction in the semilocal exchange-correlation functionals. Since the computational effort in the SIC calculations scales with the system size in the same way as for regular semilocal functional calculations, this approach provides a way to calculate properties of Mn nanoclusters as well as biomolecules and extended solids, where Mn dimers and larger cluster are present, while multireference wave function calculations can only be applied to small systems.
- 26 April 2021
- Published by American Chemical Society (ACS) in The Journal of Physical Chemistry Letters
- Vol. 12 (17) , 4240-4246
Mn Dimer Can Be Described Accurately with Density Functional Calculations When Self-Interaction Correction Is Applied
Qualitatively incorrect results are obtained for the Mn dimer in density functional theory calculations using the generalized gradient approximation (GGA), and similar results are obtained from local density and meta-GGA functionals. The coupling is predicted to be ferromagnetic rather than antiferromagnetic, and the bond between the atoms is predicted to be an order of magnitude too strong and approximately an Ångstrøm too short. Explicit, self-interaction correction (SIC) applied to a commonly used GGA energy functional, however, provides close agreement with both experimental data and high-level, multireference wave function calculations. These results show that the failure is not due to a strong correlation but rather the single electron self-interaction that is necessarily introduced in estimates of the classical Coulomb and exchange-correlation energy when only the total electron density is used as the input. The corrected functional depends explicitly on the orbital densities and can, therefore, avoid the introduction of a self-Coulomb interaction. The error arises because of an overstabilization of bonding d-states in the minority spin channel resulting from an overestimate of the d-electron self-interaction in the semilocal exchange-correlation functionals. Since the computational effort in the SIC calculations scales with the system size in the same way as for regular semilocal functional calculations, this approach provides a way to calculate properties of Mn nanoclusters as well as biomolecules and extended solids, where Mn dimers and larger cluster are present, while multireference wave function calculations can only be applied to small systems.