Simon C. Archer
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Research Interests
Simon C. Archer has a total of 60 co-authors. Here are the top co-authors by number of shared publications:
- Martin J. Green
University of Nottingham, School of Veterinary Medicine and Science, Sutton Bonington Campus, Sutton Bonington, Leicestershire, LE12 5RD, UK
13 shared publications F. Mc Coy
Animal and Grassland Research and Innovation Centre, Teagasc, Moorepark, Fermoy, Co. Cork, Ireland
5 shared publications- Jonathan N. Huxley
School of Veterinary Science, Massey University, Palmerston North 4474, New Zealand
5 shared publications W. Wapenaar
University of Nottingham, School of Veterinary Medicine and Science, Sutton Bonington Campus, Sutton Bonington, Leicestershire, LE12 5RD, United Kingdom
4 shared publicationsJon Huxley
University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD,
3 shared publicationsAndrew J. Bradley
University of Nottingham, School of Veterinary Medicine and Science, Sutton Bonington Campus, Sutton Bonington, Leicestershire, LE12 5RD, United Kingdom; Quality Milk Management Services Limited, Cedar Barn, Easton, Wells, Somerset BA5 1DU, United Kingdom
2 shared publications
Latest Publications
- Open Access
- 21 May 2021
- Published by American Dairy Science Association in JDS Communications
- Vol. 2 (5) , 248-252
An observational study of growth rate and body weight variance partition for United Kingdom dairy calves from birth to 20 weeks of age
Summary: Sources of variation can be used to target resources to maximize potential intervention effect size. This research identified sources of variation in dairy calf birth weights and growth rates. Unexplained variance was partitioned proportionally to veterinary practice, farm, and calf levels (variance partition coefficient; VPC). At birth VPC was highest at the calf level, but this decreased with age. From 66 d of age onward, VPC was increasingly higher at the farm level. These trends are suggestive of the increasing influence of management and environment as calves age. This information can be used to inform strategies to investigate and optimize the efficiency of calf rearing systems.
- 21 May 2021
- Published by American Dairy Science Association in JDS Communications
- Vol. 2 (5) , 248-252
Open AccessAn observational study of growth rate and body weight variance partition for United Kingdom dairy calves from birth to 20 weeks of age
Summary: Sources of variation can be used to target resources to maximize potential intervention effect size. This research identified sources of variation in dairy calf birth weights and growth rates. Unexplained variance was partitioned proportionally to veterinary practice, farm, and calf levels (variance partition coefficient; VPC). At birth VPC was highest at the calf level, but this decreased with age. From 66 d of age onward, VPC was increasingly higher at the farm level. These trends are suggestive of the increasing influence of management and environment as calves age. This information can be used to inform strategies to investigate and optimize the efficiency of calf rearing systems.
- Open Access
- 1 September 2017
- Published by Elsevier in Preventive Veterinary Medicine
- Vol. 144, 1-6
Prediction of Streptococcus uberis clinical mastitis risk using Matrix-assisted laser desorption ionization time of flight mass spectrometry (MALDI-TOF MS) in dairy herds
- 1 September 2017
- Published by Elsevier in Preventive Veterinary Medicine
- Vol. 144, 1-6
Open AccessPrediction of Streptococcus uberis clinical mastitis risk using Matrix-assisted laser desorption ionization time of flight mass spectrometry (MALDI-TOF MS) in dairy herds
- Open Access
- 1 January 2016
- Published by American Society for Microbiology in Journal of Clinical Microbiology
- Vol. 54 (1) , 68-74
Molecular Epidemiology of Streptococcus uberis Clinical Mastitis in Dairy Herds: Strain Heterogeneity and Transmission
Multilocus sequence typing was successfully completed on 494 isolates ofStreptococcus uberisfrom clinical mastitis cases in a study of 52 commercial dairy herds over a 12-month period. In total, 195 sequence types (STs) were identified.S. uberismastitis cases that occurred in different cows within the same herd and were attributed to a common ST were classified as potential transmission events (PTEs). Clinical cases attributed to 35 of the 195 STs identified in this study were classified PTE. PTEs were identified in 63% of the herds. PTE-associated cases, which include the first recorded occurrence of that ST in that herd (index case) and all persistent infections with that PTE ST, represented 40% of all the clinical mastitis cases and occurred in 63% of the herds. PTE-associated cases accounted for >50% of allS. uberisclinical mastitis cases in 33% of the herds. Nine STs (ST-5, -6, -20, -22, -24, -35, -233, -361, and -512), eight of which were grouped within a clonal complex (sharing at least four alleles), were statistically overrepresented (OVR STs). The findings indicate that 38% of all clinical mastitis cases and 63% of the PTEs attributed toS. uberisin dairy herds may be caused by the nine most prevalent strains. The findings suggest that a small subset of STs is disproportionally important in the epidemiology ofS. uberismastitis in the United Kingdom, with cow-to-cow transmission ofS. uberispotentially occurring in the majority of herds in the United Kingdom, and may be the most important route of infection in many herds.
- 1 January 2016
- Published by American Society for Microbiology in Journal of Clinical Microbiology
- Vol. 54 (1) , 68-74
Open AccessMolecular Epidemiology of Streptococcus uberis Clinical Mastitis in Dairy Herds: Strain Heterogeneity and Transmission
Multilocus sequence typing was successfully completed on 494 isolates ofStreptococcus uberisfrom clinical mastitis cases in a study of 52 commercial dairy herds over a 12-month period. In total, 195 sequence types (STs) were identified.S. uberismastitis cases that occurred in different cows within the same herd and were attributed to a common ST were classified as potential transmission events (PTEs). Clinical cases attributed to 35 of the 195 STs identified in this study were classified PTE. PTEs were identified in 63% of the herds. PTE-associated cases, which include the first recorded occurrence of that ST in that herd (index case) and all persistent infections with that PTE ST, represented 40% of all the clinical mastitis cases and occurred in 63% of the herds. PTE-associated cases accounted for >50% of allS. uberisclinical mastitis cases in 33% of the herds. Nine STs (ST-5, -6, -20, -22, -24, -35, -233, -361, and -512), eight of which were grouped within a clonal complex (sharing at least four alleles), were statistically overrepresented (OVR STs). The findings indicate that 38% of all clinical mastitis cases and 63% of the PTEs attributed toS. uberisin dairy herds may be caused by the nine most prevalent strains. The findings suggest that a small subset of STs is disproportionally important in the epidemiology ofS. uberismastitis in the United Kingdom, with cow-to-cow transmission ofS. uberispotentially occurring in the majority of herds in the United Kingdom, and may be the most important route of infection in many herds.
- 1 November 2015
- Published by Elsevier in The Veterinary Journal
- Vol. 206 (2) , 123-130
Recycling manure as cow bedding: Potential benefits and risks for UK dairy farms
- 1 November 2015
- Published by Elsevier in The Veterinary Journal
- Vol. 206 (2) , 123-130
Recycling manure as cow bedding: Potential benefits and risks for UK dairy farms
- 3 October 2015
- Published by Wiley in Veterinary Record
- Vol. 177 (13) , 339
Reduction in daily milk yield associated with subclinical bovine herpesvirus 1 infection
The aim of this observational cohort study was to investigate the potential economic impact of subclinical bovine herpesvirus 1 (BoHV‐1) infection in a commercial UK dairy herd in terms of milk yield depression. Infection status of cows (infected or not infected) was assigned from serology on a single occasion. A multi‐level linear model was used to evaluate the impact of infection status on milk production, using milk records that were routinely collected over two years. BoHV‐1 seropositive cows produced 2.6 kg/day less milk over the study period compared with cows that were seronegative. This result highlights the importance of appropriate management of risks associated with subclinical infection with BoHV‐1 as part of proactive herd health and production management.
- 3 October 2015
- Published by Wiley in Veterinary Record
- Vol. 177 (13) , 339
Reduction in daily milk yield associated with subclinical bovine herpesvirus 1 infection
The aim of this observational cohort study was to investigate the potential economic impact of subclinical bovine herpesvirus 1 (BoHV‐1) infection in a commercial UK dairy herd in terms of milk yield depression. Infection status of cows (infected or not infected) was assigned from serology on a single occasion. A multi‐level linear model was used to evaluate the impact of infection status on milk production, using milk records that were routinely collected over two years. BoHV‐1 seropositive cows produced 2.6 kg/day less milk over the study period compared with cows that were seronegative. This result highlights the importance of appropriate management of risks associated with subclinical infection with BoHV‐1 as part of proactive herd health and production management.
- 26 September 2015
- Published by Wiley in Veterinary Record
- Vol. 177 (12) , 319
Claw trimming of dairy cattle
We would like to thank Mr Blowey for his constructive response to our open access paper; we entirely agree that it would be preferable to trim each individual cow's foot optimally. The minimum claw lengths we presented incorporate expected variation, and are intended as a guide that is applicable to most cows. The minimum values for sole thickness provided, and hence derived claw length, allow operators to use claw lengths greater than our recommendations, yet we would not advocate shorter lengths. We fear that Mr Blowey may have misinterpreted our minimum figures as ‘target’ or ‘average’ values; this was not our intention …
- 26 September 2015
- Published by Wiley in Veterinary Record
- Vol. 177 (12) , 319
Claw trimming of dairy cattle
We would like to thank Mr Blowey for his constructive response to our open access paper; we entirely agree that it would be preferable to trim each individual cow's foot optimally. The minimum claw lengths we presented incorporate expected variation, and are intended as a guide that is applicable to most cows. The minimum values for sole thickness provided, and hence derived claw length, allow operators to use claw lengths greater than our recommendations, yet we would not advocate shorter lengths. We fear that Mr Blowey may have misinterpreted our minimum figures as ‘target’ or ‘average’ values; this was not our intention …
- Open Access
- 5 September 2015
- Published by Wiley in Veterinary Record
- Vol. 177 (9) , 222
Claw length recommendations for dairy cow foot trimming
The aim was to describe variation in length of the dorsal hoof wall in contact with the dermis for cows on a single farm, and hence, derive minimum appropriate claw lengths for routine foot trimming. The hind feet of 68 Holstein‐Friesian dairy cows were collected post mortem, and the internal structures were visualised using x‐ray µCT. The internal distance from the proximal limit of the wall horn to the distal tip of the dermis was measured from cross‐sectional sagittal images. A constant was added to allow for a minimum sole thickness of 5 mm and an average wall thickness of 8 mm. Data were evaluated using descriptive statistics and two‐level linear regression models with claw nested within cow. Based on 219 claws, the recommended dorsal wall length from the proximal limit of hoof horn was up to 90 mm for 96 per cent of claws, and the median value was 83 mm. Dorsal wall length increased by 1 mm per year of age, yet 85 per cent of the null model variance remained unexplained. Overtrimming can have severe consequences; the authors propose that the minimum recommended claw length stated in training materials for all Holstein‐Friesian cows should be increased to 90 mm.
- 5 September 2015
- Published by Wiley in Veterinary Record
- Vol. 177 (9) , 222
Open AccessClaw length recommendations for dairy cow foot trimming
The aim was to describe variation in length of the dorsal hoof wall in contact with the dermis for cows on a single farm, and hence, derive minimum appropriate claw lengths for routine foot trimming. The hind feet of 68 Holstein‐Friesian dairy cows were collected post mortem, and the internal structures were visualised using x‐ray µCT. The internal distance from the proximal limit of the wall horn to the distal tip of the dermis was measured from cross‐sectional sagittal images. A constant was added to allow for a minimum sole thickness of 5 mm and an average wall thickness of 8 mm. Data were evaluated using descriptive statistics and two‐level linear regression models with claw nested within cow. Based on 219 claws, the recommended dorsal wall length from the proximal limit of hoof horn was up to 90 mm for 96 per cent of claws, and the median value was 83 mm. Dorsal wall length increased by 1 mm per year of age, yet 85 per cent of the null model variance remained unexplained. Overtrimming can have severe consequences; the authors propose that the minimum recommended claw length stated in training materials for all Holstein‐Friesian cows should be increased to 90 mm.
- Open Access
- 1 July 2015
- Published by American Dairy Science Association in Journal of Dairy Science
- Vol. 98 (7) , 4477-4486
Evaluation of treatments for claw horn lesions in dairy cows in a randomized controlled trial
Lameness is one of the most significant endemic disease problems facing the dairy industry. Claw horn lesions (principally sole hemorrhage, sole ulcer, and white line disease) are some of the most prevalent conditions. Despite the fact that thousands of animals are treated for these conditions every year, experimental evidence is limited on the most effective treatment protocols. A randomized, positively controlled clinical trial was conducted to test the recovery of newly lame cows with claw horn lesions. Animals on 5 farms were locomotion scored every 2wk. Cows were eligible for recruitment if they had 2 nonlame scores followed by a lame score and had a claw horn lesion on a single claw of a single foot. Following a therapeutic trim, enrolled cows were randomly allocated to 1 of 4 treatments: treatment 1-no further treatment (positive control; TRM), treatment 2-trim plus a block on the sound claw (TB), treatment 3-trim plus a 3-d course of the nonsteroidal anti-inflammatory drug (NSAID) ketoprofen (TN), treatment 4-trim plus a block plus ketoprofen (TBN). The primary outcome measure was locomotion score 35d after treatment, by an observer blind to treatment group. Descriptive statistics suggested that treatment groups were balanced at the time of enrollment, that is, randomization was successful. Based on a sound locomotion score (score 0) 35d after treatment, the number of cures was 11 of 45 (24.4%) for TRM, 14 of 39 (35.9%) for TB, 12 of 42 (28.6%) for TN, and 23 of 41 (56.1%) for TBN. The difference between TBN and TRM was significant. To test for confounding imbalances between treatment groups, logistic regression models were built with 2 outcomes, either sound (score 0) or nonlame (score 0 or 1) 35d after treatment. Compared with TRM, animals that received TBN were significantly more likely to cure to a sound outcome. Farm, treatment season, lesion diagnosis, limb affected, treatment operator, and stage of lactation were included in the final models. Our work suggests that lameness cure is maximized with NSAID treatment in addition to the common practices of therapeutic trimming and elevation of the diseased claw using a block when cows are newly and predominantly mildly lame.
- 1 July 2015
- Published by American Dairy Science Association in Journal of Dairy Science
- Vol. 98 (7) , 4477-4486
Open AccessEvaluation of treatments for claw horn lesions in dairy cows in a randomized controlled trial
Lameness is one of the most significant endemic disease problems facing the dairy industry. Claw horn lesions (principally sole hemorrhage, sole ulcer, and white line disease) are some of the most prevalent conditions. Despite the fact that thousands of animals are treated for these conditions every year, experimental evidence is limited on the most effective treatment protocols. A randomized, positively controlled clinical trial was conducted to test the recovery of newly lame cows with claw horn lesions. Animals on 5 farms were locomotion scored every 2wk. Cows were eligible for recruitment if they had 2 nonlame scores followed by a lame score and had a claw horn lesion on a single claw of a single foot. Following a therapeutic trim, enrolled cows were randomly allocated to 1 of 4 treatments: treatment 1-no further treatment (positive control; TRM), treatment 2-trim plus a block on the sound claw (TB), treatment 3-trim plus a 3-d course of the nonsteroidal anti-inflammatory drug (NSAID) ketoprofen (TN), treatment 4-trim plus a block plus ketoprofen (TBN). The primary outcome measure was locomotion score 35d after treatment, by an observer blind to treatment group. Descriptive statistics suggested that treatment groups were balanced at the time of enrollment, that is, randomization was successful. Based on a sound locomotion score (score 0) 35d after treatment, the number of cures was 11 of 45 (24.4%) for TRM, 14 of 39 (35.9%) for TB, 12 of 42 (28.6%) for TN, and 23 of 41 (56.1%) for TBN. The difference between TBN and TRM was significant. To test for confounding imbalances between treatment groups, logistic regression models were built with 2 outcomes, either sound (score 0) or nonlame (score 0 or 1) 35d after treatment. Compared with TRM, animals that received TBN were significantly more likely to cure to a sound outcome. Farm, treatment season, lesion diagnosis, limb affected, treatment operator, and stage of lactation were included in the final models. Our work suggests that lameness cure is maximized with NSAID treatment in addition to the common practices of therapeutic trimming and elevation of the diseased claw using a block when cows are newly and predominantly mildly lame.
- Open Access
- 10 June 2015
- Published by Public Library of Science (PLoS) in PLOS ONE
- Vol. 10 (6) , e0127846
Use of Stochastic Simulation to Evaluate the Reduction in Methane Emissions and Improvement in Reproductive Efficiency from Routine Hormonal Interventions in Dairy Herds
This study predicts the magnitude and between herd variation in changes of methane emissions and production efficiency associated with interventions to improve reproductive efficiency in dairy cows. Data for 10,000 herds of 200 cows were simulated. Probability of conception was predicted daily from the start of the study (parturition) for each cow up to day 300 of lactation. Four scenarios of differing first insemination management were simulated for each herd using the same theoretical cows: A baseline scenario based on breeding from observed oestrus only, synchronisation of oestrus for pre-set first insemination using 2 methods, and a regime using prostaglandin treatments followed by first insemination to observed oestrus. Cows that did not conceive to first insemination were re-inseminated following detection of oestrus. For cows that conceived, gestation length was 280 days with cessation of milking 60 days before calving. Those cows not pregnant after 300 days of lactation were culled and replaced by a heifer. Daily milk yield was calculated for 730 days from the start of the study for each cow. Change in mean reproductive and economic outputs were summarised for each herd following the 3 interventions. For each scenario, methane emissions were determined by daily forage dry matter intake, forage quality, and cow replacement risk. Linear regression was used to summarise relationships. In some circumstances improvement in reproductive efficiency using the programmes investigated was associated with reduced cost and methane emissions compared to reliance on detection of oestrus. Efficiency of oestrus detection and the time to commencement of breeding after calving influenced variability in changes in cost and methane emissions. For an average UK herd this was a saving of at least £50 per cow and a 3.6% reduction in methane emissions per L of milk when timing of first insemination was pre-set.
- 10 June 2015
- Published by Public Library of Science (PLoS) in PLOS ONE
- Vol. 10 (6) , e0127846
Open AccessUse of Stochastic Simulation to Evaluate the Reduction in Methane Emissions and Improvement in Reproductive Efficiency from Routine Hormonal Interventions in Dairy Herds
This study predicts the magnitude and between herd variation in changes of methane emissions and production efficiency associated with interventions to improve reproductive efficiency in dairy cows. Data for 10,000 herds of 200 cows were simulated. Probability of conception was predicted daily from the start of the study (parturition) for each cow up to day 300 of lactation. Four scenarios of differing first insemination management were simulated for each herd using the same theoretical cows: A baseline scenario based on breeding from observed oestrus only, synchronisation of oestrus for pre-set first insemination using 2 methods, and a regime using prostaglandin treatments followed by first insemination to observed oestrus. Cows that did not conceive to first insemination were re-inseminated following detection of oestrus. For cows that conceived, gestation length was 280 days with cessation of milking 60 days before calving. Those cows not pregnant after 300 days of lactation were culled and replaced by a heifer. Daily milk yield was calculated for 730 days from the start of the study for each cow. Change in mean reproductive and economic outputs were summarised for each herd following the 3 interventions. For each scenario, methane emissions were determined by daily forage dry matter intake, forage quality, and cow replacement risk. Linear regression was used to summarise relationships. In some circumstances improvement in reproductive efficiency using the programmes investigated was associated with reduced cost and methane emissions compared to reliance on detection of oestrus. Efficiency of oestrus detection and the time to commencement of breeding after calving influenced variability in changes in cost and methane emissions. For an average UK herd this was a saving of at least £50 per cow and a 3.6% reduction in methane emissions per L of milk when timing of first insemination was pre-set.
- Open Access
- 1 June 2015
- Published by American Dairy Science Association in Journal of Dairy Science
- Vol. 98 (6) , 3766-3777
Low body condition predisposes cattle to lameness: An 8-year study of one dairy herd
Lameness in dairy cows is a multifactorial and progressive disease with complex interactions between risk factors contributing to its occurrence. Detailed records were obtained from one United Kingdom dairy herd over an 8-yr period. Weekly locomotion scores were used to classify cows as not lame (score 1 to 2), mildly lame (score 3) and severely lame (score 4 to 5). These outcomes were used to investigate the hypothesis that low body condition score (BCS) is associated with an increased risk of lameness in dairy cows. Mixed effect multinomial logistic regression models were used to investigate the association between prior BCS and repeat lameness events during the longitudinal period of the study. Discrete time survival models were used to explore the relationship between prior BCS and first lifetime lameness events. In total, 79,565 cow weeks at risk were obtained for 724 cows. The number of lameness events was 17,114, of which 8,799 were categorized as mildly lame and 8,315 as severely lame. The median BCS was 2.25 (range, 0.75 to 4.25) and the mean body weight (BW) and age at first calving were 619.5 kg (range, 355.6 to 956.4 kg) and 25.8 mo (range, 20.5 to 37.8 mo), respectively. Subsets of the data were used in the discrete time survival models: 333 mild and 211 severe first lifetime lameness events in heifers (first lactation cows), and 81 mild and 49 severe first lifetime lameness events in cows second lactation or greater. Low BCS 3 wk before a repeated lameness event was associated with a significantly increased risk of lameness. Cows with BCS<2 were at greatest risk of mild or severe lameness, and an increased BCS above 2 was associated with a reduced risk of mild or severe lameness. Low BCS 16 or 8 wk before a first mild or severe lifetime lameness event, respectively, also had a positive association with risk of lameness in cows second lactation or greater. This provides evidence to support targeting management toward maintaining BCS to minimize the risk of lameness. Low BW (independent of BCS) and increased age at first calving above 24 mo were also associated with increased long-term risk of repeated lameness events. Overall, the model explained 62 and 60% of the variability for mild and severe lameness, respectively, highlighting the importance of these variables as risk factors and hence where management could be targeted to significantly affect reducing the risk of lameness.
- 1 June 2015
- Published by American Dairy Science Association in Journal of Dairy Science
- Vol. 98 (6) , 3766-3777
Open AccessLow body condition predisposes cattle to lameness: An 8-year study of one dairy herd
Lameness in dairy cows is a multifactorial and progressive disease with complex interactions between risk factors contributing to its occurrence. Detailed records were obtained from one United Kingdom dairy herd over an 8-yr period. Weekly locomotion scores were used to classify cows as not lame (score 1 to 2), mildly lame (score 3) and severely lame (score 4 to 5). These outcomes were used to investigate the hypothesis that low body condition score (BCS) is associated with an increased risk of lameness in dairy cows. Mixed effect multinomial logistic regression models were used to investigate the association between prior BCS and repeat lameness events during the longitudinal period of the study. Discrete time survival models were used to explore the relationship between prior BCS and first lifetime lameness events. In total, 79,565 cow weeks at risk were obtained for 724 cows. The number of lameness events was 17,114, of which 8,799 were categorized as mildly lame and 8,315 as severely lame. The median BCS was 2.25 (range, 0.75 to 4.25) and the mean body weight (BW) and age at first calving were 619.5 kg (range, 355.6 to 956.4 kg) and 25.8 mo (range, 20.5 to 37.8 mo), respectively. Subsets of the data were used in the discrete time survival models: 333 mild and 211 severe first lifetime lameness events in heifers (first lactation cows), and 81 mild and 49 severe first lifetime lameness events in cows second lactation or greater. Low BCS 3 wk before a repeated lameness event was associated with a significantly increased risk of lameness. Cows with BCS<2 were at greatest risk of mild or severe lameness, and an increased BCS above 2 was associated with a reduced risk of mild or severe lameness. Low BCS 16 or 8 wk before a first mild or severe lifetime lameness event, respectively, also had a positive association with risk of lameness in cows second lactation or greater. This provides evidence to support targeting management toward maintaining BCS to minimize the risk of lameness. Low BW (independent of BCS) and increased age at first calving above 24 mo were also associated with increased long-term risk of repeated lameness events. Overall, the model explained 62 and 60% of the variability for mild and severe lameness, respectively, highlighting the importance of these variables as risk factors and hence where management could be targeted to significantly affect reducing the risk of lameness.