Chi-Hon Lee

Taking advantage of the good mechanical strength of expanded Drosophila brains and to tackle their relatively large size that can complicate imaging, we apply potassium (poly)acrylate-based hydrogels for expansion microscopy (ExM), resulting in a 40x plus increased resolution of transgenic fluorescent proteins preserved by glutaraldehyde fixation in the nervous system. Large-volume ExM is realized by using an axicon-based Bessel lightsheet microscope, featuring gentle multi-color fluorophore excitation and intrinsic optical sectioning capability, enabling visualization of Tm5a neurites and L3 lamina neurons with photoreceptors in the optic lobe. We also image nanometer-sized dopaminergic neurons across the same intact iteratively expanded Drosophila brain, enabling us to measure the 3D expansion ratio. Here we show that at a tile scanning speed of ~1 min/mm³ with 10¹² pixels over 14 hours, we image the centimeter-sized fly brain at an effective resolution comparable to electron microscopy, allowing us to visualize mitochondria within presynaptic compartments and Bruchpilot (Brp) scaffold proteins distributed in the central complex, enabling robust analyses of neurobiological topics.

In this protocol, we illustrate how to process images acquired during functional imaging of fly visual neurons and how to analyze and quantify visually evoked activities. We use ImageJ/Fiji for the initial imaging processing. All images acquired previously should be registered to compensate for tissue movement. Next, we extract fluorescence signals specifically from neurons that respond to the light by marking the regions of interest (ROIs). The data are further analyzed in a data-analysis program, such as MATLAB, to plot response traces against time. Finally, we obtain different parameters to reveal the neuron's physiological properties by fitting the data with a Naka–Rushton function.

Functional imaging methodologies allow researchers to simultaneously monitor the neural activities of all single neurons in a population, and this ability has led to great advances in neuroscience research. Taking advantage of a genetically tractable model organism, functional imaging in Drosophila provides opportunities to probe scientific questions that were previously unanswerable by electrophysiological recordings. Here, we introduce comprehensive protocols for two-photon calcium imaging in fly visual neurons. We also discuss some challenges in applying optical imaging techniques to study visual systems and consider the best practices for making comparisons between different neuron groups.

In this protocol, we describe the procedures for visualizing light-evoked calcium changes in fly visual neurons using two-photon microscopy. Before starting the imaging, the visual stimulation system should be set up properly. To facilitate later data analysis, we recommend synchronizing (or time-stamping) imaging and visual stimuli during experiments. Depending on the scientific question and experimental design, the visual stimuli can be modified. Here we provide an example protocol for measuring the intensity–response function in fly ultraviolet (UV)-sensing photoreceptors using UV illumination. For this purpose, precise time-stamping or synchronization is not required.

In this protocol, we outline procedures to mount the fly and to open up the head cuticle to expose the optic lobes for in vivo imaging. The fly is first inserted into a custom-made fly chamber in which the fly's head is stabilized on a piece of aluminum foil. Once the fly is mounted in the chamber, its head cuticle is removed, exposing the optic lobe for recording. The brain tissues (above the foil), including the optic lobes, should be bathed in fly saline. Meanwhile, the eyes (below the foil) are kept dry to receive light stimuli during the recording. A considerable level of expertise and hand dexterity is required to handle a small animal such as a fly, especially when opening its head capsule without damaging the brain tissue. This expertise should be gained through mindful repetition of the protocol. With appropriate preparation and skills, the success rate for this procedure can be >95%. Using this protocol, it is possible to record ultraviolet (UV)-sensing photoreceptors, which have long visual fibers that terminate at the medulla (the second optic neuropil). Depending on the visual neurons of interest, some modifications to fly mounting might be needed.

Significance: To move efficiently, animals must continuously work out their x,y,z positions with respect to real-world objects, and many animals have a pair of eyes to achieve this. How photoreceptors actively sample the eyes’ optical image disparity is not understood because this fundamental information-limiting step has not been investigated in vivo over the eyes’ whole sampling matrix. This integrative multiscale study will advance our current understanding of stereopsis from static image disparity comparison to a morphodynamic active sampling theory. It shows how photomechanical photoreceptor microsaccades enable Drosophila superresolution three-dimensional vision and proposes neural computations for accurately predicting these flies’ depth-perception dynamics, limits, and visual behaviors.

Neural mechanisms behind stereopsis, which requires simultaneous disparity inputs from two eyes, have remained mysterious. Here we show how ultrafast mirror-symmetric photomechanical contractions in the frontal forward-facing left and right eye photoreceptors give Drosophila super-resolution 3D-vision. By interlinking multiscale in vivo assays with multiscale simulations, we reveal how these photoreceptor microsaccades - by verging, diverging and narrowing the eyes’ overlapping receptive fields - channel depth information, as phasic binocular image motion disparity signals in time. We further show how peripherally, outside stereopsis, microsaccadic sampling tracks a flying fly’s optic flow field to better resolve the world in motion. These results change our understanding of how insect compound eyes work and suggest a general dynamic stereo-information sampling strategy for animals, robots and sensors. Significance statement: To move efficiently, animals must continuously work out their x,y,z-positions in respect to real-world objects, and many animals have a pair of eyes to achieve this. How photoreceptors actively sample the eyes’ optical image disparity is not understood because this fundamental information-limiting step has not been investigated in vivo over the eyes’ whole sampling matrix. This integrative multiscale study will advance our current understanding of stereopsis from static image disparity comparison to a new morphodynamic active sampling theory. It shows how photomechanical photoreceptor microsaccades enable Drosophila super-resolution 3D-vision and proposes neural computations for accurately predicting these flies’ depth-perception dynamics, limits, and visual behaviors.

Stereotypic dendrite arborizations are key morphological features of neuronal identity, as the size, shape and location of dendritic trees determine the synaptic input fields and how information is integrated within developed neural circuits. In this review, we focus on the actions of extrinsic intercellular communication factors and their effects on intrinsic developmental processes that lead to dendrite patterning. Surrounding neurons or supporting cells express adhesion receptors and secreted proteins that respectively, act via direct contact or over short distances to shape, size, and localize dendrites during specific developmental stages. The different ligand-receptor interactions and downstream signaling events appear to direct dendrite morphogenesis by converging on two categorical mechanisms: local cytoskeletal and adhesion modulation and global transcriptional regulation of key dendritic growth components, such as lipid synthesis enzymes. Recent work has begun to uncover how the coordinated signaling of multiple extrinsic factors promotes complexity in dendritic trees and ensures robust dendritic patterning.