Sandip Kumar Nandi
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Sandip Kumar Nandi has a total of 44 co-authors. Here are the top co-authors by number of shared publications:
- Ashis Biswas
Indian Institute of Technology Bhubaneswar
11 shared publications - Ram H. Nagaraj
School of Medicine, University of Colorado, Anschutz Medical Campus, Aurora, USA
9 shared publications - Alok Kumar Panda
Environmental Science Laboratory, School of Applied Sciences, Kalinga Institute of Industrial Technology, Deemed to be University
8 shared publications Rooban B. Nahomi
Department of Ophthalmology, School of Medicine University of Colorado Aurora Colorado USA
8 shared publications- Ayon Chakraborty
School of Basic Sciences, Indian Institute of Technology Bhubaneswar, Bhubaneswar, India
7 shared publications Anirban Bhunia
Department of Biophysics, Bose Institute, Kolkata, India
3 shared publications
Latest Publications
- 12 November 2025
- Published by Wiley in Protein Science
- Vol. 34 (12) , e70375
DJ ‐1 in human lenses: Potential role in preventing advanced glycation endproduct formation
The amino groups of lysine and arginine residues in proteins react with reducing sugars and carbonyl compounds to form advanced glycation endproducts (AGEs). Several AGEs have been detected in human lenses, and their levels have been shown to increase with age and cataract formation. AGEs can lead to structural changes, yellow pigmentation, and cross‐linking of lens proteins. Studies have shown a positive correlation between AGEs levels and lens age, stiffness, and cataracts. Recent research suggests that DJ‐1 can inhibit the accumulation of AGEs in cellular proteins by reversing the early glycation steps. Our study found that DJ‐1 is present in epithelial cells and the outer cortex of the human lens. DJ‐1 is catalytically active in human lenses, and its ability to metabolize methylglyoxal (MGO) into D‐lactate diminishes as the lens ages. The formation of MGH‐1 from MGO was promoted in lens proteins treated with the DJ‐1 inhibitor. Recombinant DJ‐1 prevents α‐dicarbonyl‐mediated cross‐linking and AGE accumulation in human αB‐crystallin. DJ‐1 prevents glyoxal‐mediated cell death and AGE accumulation in human lens epithelial cells. Taken together, our results suggest that DJ‐1 in the human lens hinders AGE accumulation. Enhancing its activity using pharmacological agents can potentially delay or prevent the onset of presbyopia and cataracts.
- 12 November 2025
- Published by Wiley in Protein Science
- Vol. 34 (12) , e70375
DJ ‐1 in human lenses: Potential role in preventing advanced glycation endproduct formation
The amino groups of lysine and arginine residues in proteins react with reducing sugars and carbonyl compounds to form advanced glycation endproducts (AGEs). Several AGEs have been detected in human lenses, and their levels have been shown to increase with age and cataract formation. AGEs can lead to structural changes, yellow pigmentation, and cross‐linking of lens proteins. Studies have shown a positive correlation between AGEs levels and lens age, stiffness, and cataracts. Recent research suggests that DJ‐1 can inhibit the accumulation of AGEs in cellular proteins by reversing the early glycation steps. Our study found that DJ‐1 is present in epithelial cells and the outer cortex of the human lens. DJ‐1 is catalytically active in human lenses, and its ability to metabolize methylglyoxal (MGO) into D‐lactate diminishes as the lens ages. The formation of MGH‐1 from MGO was promoted in lens proteins treated with the DJ‐1 inhibitor. Recombinant DJ‐1 prevents α‐dicarbonyl‐mediated cross‐linking and AGE accumulation in human αB‐crystallin. DJ‐1 prevents glyoxal‐mediated cell death and AGE accumulation in human lens epithelial cells. Taken together, our results suggest that DJ‐1 in the human lens hinders AGE accumulation. Enhancing its activity using pharmacological agents can potentially delay or prevent the onset of presbyopia and cataracts.
- 17 October 2020
- Published by Elsevier in Biochemical and Biophysical Research Communications
- Vol. 533 (4) , 1352-1358
Transient elevation of temperature promotes cross-linking of α-crystallin-client proteins through formation of advanced glycation endproducts: A potential role in presbyopia and cataracts
- 17 October 2020
- Published by Elsevier in Biochemical and Biophysical Research Communications
- Vol. 533 (4) , 1352-1358
Transient elevation of temperature promotes cross-linking of α-crystallin-client proteins through formation of advanced glycation endproducts: A potential role in presbyopia and cataracts
- Open Access
- 1 April 2020
- Published by Elsevier in Journal of Biological Chemistry
- Vol. 295 (17) , 5701-5716
Glycation-mediated inter-protein cross-linking is promoted by chaperone–client complexes of α-crystallin: Implications for lens aging and presbyopia
- 1 April 2020
- Published by Elsevier in Journal of Biological Chemistry
- Vol. 295 (17) , 5701-5716
Open AccessGlycation-mediated inter-protein cross-linking is promoted by chaperone–client complexes of α-crystallin: Implications for lens aging and presbyopia
- 1 March 2020
- Published by Elsevier in International Journal of Biological Macromolecules
- Vol. 146, 648-660
M. leprae HSP18 suppresses copper (II) mediated ROS generation: Effect of redox stress on its structure and function
- 1 March 2020
- Published by Elsevier in International Journal of Biological Macromolecules
- Vol. 146, 648-660
M. leprae HSP18 suppresses copper (II) mediated ROS generation: Effect of redox stress on its structure and function
- 1 January 2020
- Published by Elsevier in Experimental Eye Research
- Vol. 190, 107864
Lysine malonylation and propionylation are prevalent in human lens proteins
- 1 January 2020
- Published by Elsevier in Experimental Eye Research
- Vol. 190, 107864
Lysine malonylation and propionylation are prevalent in human lens proteins
- Open Access
- 31 July 2019
- Published by Springer Nature in Cell Death Discovery
- Vol. 5 (1) , 122
Correction: Systemically administered peptain-1 inhibits retinal ganglion cell death in animal models: implications for neuroprotection in glaucoma
Following publication of the original article, the authors noticed that scale bars were missing in Fig. 7 and four labels in Fig. 2c.The PDF and HTML versions of the paper have been modified accordingly.An amendment to this paper has been published and can be accessed via a link at the top of the paper.
- 31 July 2019
- Published by Springer Nature in Cell Death Discovery
- Vol. 5 (1) , 122
Open AccessCorrection: Systemically administered peptain-1 inhibits retinal ganglion cell death in animal models: implications for neuroprotection in glaucoma
Following publication of the original article, the authors noticed that scale bars were missing in Fig. 7 and four labels in Fig. 2c.The PDF and HTML versions of the paper have been modified accordingly.An amendment to this paper has been published and can be accessed via a link at the top of the paper.
- Open Access
- 4 July 2019
- Published by Springer Nature in Cell Death Discovery
- Vol. 5 (1) , 1-15
Systemically administered peptain-1 inhibits retinal ganglion cell death in animal models: implications for neuroprotection in glaucoma
Axonal degeneration and death of retinal ganglion cells (RGCs) are the primary causes of vision loss in glaucoma. In this study, we evaluated the efficacy of a peptide (peptain-1) that exhibits robust chaperone and anti-apoptotic activities against RGC loss in two rodent models and in cultured RGCs. In cultures of rat primary RGCs and in rat retinal explants peptain-1 significantly decreased hypoxia-induced RGC loss when compared to a scrambled peptide. Intraperitoneally (i.p.) injected peptain-1 (conjugated to a Cy7 fluorophore) was detected in the retina indicative of its ability to cross the blood-retinal barrier. Peptain-1 treatment inhibited RGC loss in the retina of mice subjected to ischemia/reperfusion (I/R) injury. A reduction in anterograde axonal transport was also ameliorated by peptain-1 treatment in the retina of I/R injured mice. Furthermore, i.p. injections of peptain-1 significantly reduced RGC death and axonal loss and partially restored retinal mitochondrial cytochrome c oxidase subunit 6b2 (COX 6b2) levels in rats subjected to five weeks of elevated intraocular pressure. We conclude that i.p. injected peptain-1 gains access to the retina and protects both RGC somas and axons against the injury caused by I/R and ocular hypertension. Based on these findings, peptain-1 has the potential to be developed as an efficacious neuroprotective agent for the treatment of glaucoma.
- 4 July 2019
- Published by Springer Nature in Cell Death Discovery
- Vol. 5 (1) , 1-15
Open AccessSystemically administered peptain-1 inhibits retinal ganglion cell death in animal models: implications for neuroprotection in glaucoma
Axonal degeneration and death of retinal ganglion cells (RGCs) are the primary causes of vision loss in glaucoma. In this study, we evaluated the efficacy of a peptide (peptain-1) that exhibits robust chaperone and anti-apoptotic activities against RGC loss in two rodent models and in cultured RGCs. In cultures of rat primary RGCs and in rat retinal explants peptain-1 significantly decreased hypoxia-induced RGC loss when compared to a scrambled peptide. Intraperitoneally (i.p.) injected peptain-1 (conjugated to a Cy7 fluorophore) was detected in the retina indicative of its ability to cross the blood-retinal barrier. Peptain-1 treatment inhibited RGC loss in the retina of mice subjected to ischemia/reperfusion (I/R) injury. A reduction in anterograde axonal transport was also ameliorated by peptain-1 treatment in the retina of I/R injured mice. Furthermore, i.p. injections of peptain-1 significantly reduced RGC death and axonal loss and partially restored retinal mitochondrial cytochrome c oxidase subunit 6b2 (COX 6b2) levels in rats subjected to five weeks of elevated intraocular pressure. We conclude that i.p. injected peptain-1 gains access to the retina and protects both RGC somas and axons against the injury caused by I/R and ocular hypertension. Based on these findings, peptain-1 has the potential to be developed as an efficacious neuroprotective agent for the treatment of glaucoma.
- 1 April 2019
- Published by Elsevier in Journal of Immunological Methods
- Vol. 467, 37-47
A monoclonal antibody targeted to the functional peptide of αB-crystallin inhibits the chaperone and anti-apoptotic activities
- 1 April 2019
- Published by Elsevier in Journal of Immunological Methods
- Vol. 467, 37-47
A monoclonal antibody targeted to the functional peptide of αB-crystallin inhibits the chaperone and anti-apoptotic activities
- 13 February 2019
- Published by American Chemical Society (ACS) in Biochemistry
- Vol. 58 (9) , 1260-1274
Succinylation Is a Gain-of-Function Modification in Human Lens αB-Crystallin
Acylation of lysine residues is a common post-translational modification of cellular proteins. Here, we show that lysine succinylation, a type of acylation, occurs in human lens proteins. All of the major crystallins exhibited Nε-succinyllysine (SuccK) residues. Quantification of SuccK in human lens proteins (from donors between the ages of 20 and 73 years) by LC–MS/MS showed a range between 1.2 and 14.3 pmol/mg lens protein. The total SuccK levels were slightly reduced in aged lenses (age > 60 years) relative to young lenses (age < 30 years). Immunohistochemical analyses revealed that SuccK was present in epithelium and fiber cells. Western blotting and immunoprecipitation experiments revealed that SuccK is particularly prominent in αB-crystallin, and succinylation in vitro revealed that αB-crystallin is more prone to succinylation than αA-crystallin. Mass spectrometric analyses showed succinylation at K72, K90, K92, K166, K175, and potentially K174 in human lens αB-crystallin. We detected succinylation at K72, K82, K90, K92, K103, K121, K150, K166, K175, and potentially K174 by mass spectrometry in mildly succinylated αB-crystallin. Mild succinylation improved the chaperone activity of αB-crystallin along with minor perturbation in tertiary and quaternary structure of the protein. These observations imply that succinylation is beneficial to αB-crystallin by improving its chaperone activity with only mild conformational alterations.
- 13 February 2019
- Published by American Chemical Society (ACS) in Biochemistry
- Vol. 58 (9) , 1260-1274
Succinylation Is a Gain-of-Function Modification in Human Lens αB-Crystallin
Acylation of lysine residues is a common post-translational modification of cellular proteins. Here, we show that lysine succinylation, a type of acylation, occurs in human lens proteins. All of the major crystallins exhibited Nε-succinyllysine (SuccK) residues. Quantification of SuccK in human lens proteins (from donors between the ages of 20 and 73 years) by LC–MS/MS showed a range between 1.2 and 14.3 pmol/mg lens protein. The total SuccK levels were slightly reduced in aged lenses (age > 60 years) relative to young lenses (age < 30 years). Immunohistochemical analyses revealed that SuccK was present in epithelium and fiber cells. Western blotting and immunoprecipitation experiments revealed that SuccK is particularly prominent in αB-crystallin, and succinylation in vitro revealed that αB-crystallin is more prone to succinylation than αA-crystallin. Mass spectrometric analyses showed succinylation at K72, K90, K92, K166, K175, and potentially K174 in human lens αB-crystallin. We detected succinylation at K72, K82, K90, K92, K103, K121, K150, K166, K175, and potentially K174 by mass spectrometry in mildly succinylated αB-crystallin. Mild succinylation improved the chaperone activity of αB-crystallin along with minor perturbation in tertiary and quaternary structure of the protein. These observations imply that succinylation is beneficial to αB-crystallin by improving its chaperone activity with only mild conformational alterations.