Siting Chen
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Research Interests
Siting Chen has a total of 18 co-authors. Here are the top co-authors by number of shared publications:
- Guanglong Qiu
Guangxi Key Lab of Mangrove Conservation and Utilization, Guangxi Academy of Marine Sciences (Guangxi Mangrove Research Center), Guangxi Academy of Sciences, Beihai, China
10 shared publications - Fang-Qing Guo
The National Key Laboratory of Plant Molecular Genetics and CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology & Ecology, Chinese Academy of Sciences, Shanghai 200032, China
4 shared publications Guanglong Qiu
Guangxi Mangrove Research Center
4 shared publicationsJi-Kai Li
The National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences , Shanghai, China
2 shared publicationsXiao-Fei Yang
The National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences , Shanghai, China
2 shared publicationsYu-Ting Wang
The National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences , Shanghai, China
2 shared publications
Latest Publications
- Open Access
- 1 June 2024
- Published by AME Publishing Company in Journal of Thoracic Disease
- Vol. 16 (6) , 3696-3710
Incidence and risk factors for recurrent primary spontaneous pneumothorax after video-assisted thoracoscopic surgery: a systematic review and meta-analysis
Background: The incidence and risk factors for recurrent primary spontaneous pneumothorax (PSP) after video-assisted thoracoscopic surgery (VATS) remain controversial. A systematic review and meta-analysis were conducted to determine the incidence and risk factors for recurrence of PSP after VATS. Methods: A systematic search of PubMed, Web of Science, Embase, and Cochrane Library databases was conducted to identify studies that reported the rate and risk factors for recurrence of PSP after VATS published up to December 2023. The pooled recurrence rate and odds ratio (OR) with 95% confidence interval (CI) were calculated using a random-effects model. In addition, risk factors were similarly included in the meta-analysis, and sources of heterogeneity were explored using meta-regression analysis. Results: A total of 72 studies involving 23,531 patients were included in the meta-analysis of recurrence. The pooled recurrence rate of PSP after VATS was 10% (95% CI: 8–12%). Male sex (OR: 0.61; 95% CI: 0.41–0.92; P=0.02), younger age [mean difference (MD): −2.01; 95% CI: −2.57 to −1.45; PConclusions: The recurrence rate of PSP after VATS remains high. Healthcare professionals should focus on factors, including sex, age, weight, BMI, and history of contralateral pneumothorax, that may influence recurrence.
- 1 June 2024
- Published by AME Publishing Company in Journal of Thoracic Disease
- Vol. 16 (6) , 3696-3710
Open AccessIncidence and risk factors for recurrent primary spontaneous pneumothorax after video-assisted thoracoscopic surgery: a systematic review and meta-analysis
Background: The incidence and risk factors for recurrent primary spontaneous pneumothorax (PSP) after video-assisted thoracoscopic surgery (VATS) remain controversial. A systematic review and meta-analysis were conducted to determine the incidence and risk factors for recurrence of PSP after VATS. Methods: A systematic search of PubMed, Web of Science, Embase, and Cochrane Library databases was conducted to identify studies that reported the rate and risk factors for recurrence of PSP after VATS published up to December 2023. The pooled recurrence rate and odds ratio (OR) with 95% confidence interval (CI) were calculated using a random-effects model. In addition, risk factors were similarly included in the meta-analysis, and sources of heterogeneity were explored using meta-regression analysis. Results: A total of 72 studies involving 23,531 patients were included in the meta-analysis of recurrence. The pooled recurrence rate of PSP after VATS was 10% (95% CI: 8–12%). Male sex (OR: 0.61; 95% CI: 0.41–0.92; P=0.02), younger age [mean difference (MD): −2.01; 95% CI: −2.57 to −1.45; PConclusions: The recurrence rate of PSP after VATS remains high. Healthcare professionals should focus on factors, including sex, age, weight, BMI, and history of contralateral pneumothorax, that may influence recurrence.
- 30 May 2024
- Published by Elsevier in Plant Physiology and Biochemistry
- Vol. 212, 108785
Physiological and multi-omics analysis reveals the influence of copper on Halophila beccarii Asch
- 30 May 2024
- Published by Elsevier in Plant Physiology and Biochemistry
- Vol. 212, 108785
Physiological and multi-omics analysis reveals the influence of copper on Halophila beccarii Asch
- 27 April 2023
- Published by Springer Nature in Molecular Biology Reports
- Vol. 50 (6) , 5117-5124
Overexpression of Zostera japonica J protein gene ZjDjB1 in Arabidopsis enhanced the tolerance to lead stress
- 27 April 2023
- Published by Springer Nature in Molecular Biology Reports
- Vol. 50 (6) , 5117-5124
Overexpression of Zostera japonica J protein gene ZjDjB1 in Arabidopsis enhanced the tolerance to lead stress
- 8 October 2022
- Published by Springer Nature in Plant Biotechnology Reports
- Vol. 16 (6) , 697-707
Overexpression of the intertidal seagrass 14-3-3 gene ZjGRF1 enhances the tolerance of transgenic Arabidopsis to salt and osmotic stress
- 8 October 2022
- Published by Springer Nature in Plant Biotechnology Reports
- Vol. 16 (6) , 697-707
Overexpression of the intertidal seagrass 14-3-3 gene ZjGRF1 enhances the tolerance of transgenic Arabidopsis to salt and osmotic stress
- Open Access
- 30 September 2022
- Published by Springer Nature in Scientific Reports
- Vol. 12 (1) , 1-12
Single-molecule real-time sequencing of the full-length transcriptome of Halophila beccarii
Ecologically, Halophila beccarii Asch. is considered as a colonizing or a pioneer seagrass species and a “tiny but mighty” seagrass species, since it may recover quickly from disturbance generally. The use of transcriptome technology can provide a better understanding of the physiological processes of seagrasses. To date, little is known about the genome and transcriptome information of H. beccarii. In this study, we used single molecule real-time (SMRT) sequencing to obtain full-length transcriptome data and characterize the transcriptome structure. A total of 11,773 of the 15,348 transcripts were successfully annotated in seven databases. In addition, 1573 long non-coding RNAs, 8402 simple sequence repeats and 2567 transcription factors were predicted in all the transcripts. A GO analysis showed that 5843 transcripts were divided into three categories, including biological process (BP), cellular component (CC) and molecular function (MF). In these three categories, metabolic process (1603 transcripts), protein-containing complex (515 transcripts) and binding (3233 transcripts) were the primary terms in BP, CC, and MF, respectively. The major types of transcription factors were involved in MYB-related and NF-YB families. To the best of our knowledge, this is the first report of the transcriptome of H. beccarii using SMRT sequencing technology.
- 30 September 2022
- Published by Springer Nature in Scientific Reports
- Vol. 12 (1) , 1-12
Open AccessSingle-molecule real-time sequencing of the full-length transcriptome of Halophila beccarii
Ecologically, Halophila beccarii Asch. is considered as a colonizing or a pioneer seagrass species and a “tiny but mighty” seagrass species, since it may recover quickly from disturbance generally. The use of transcriptome technology can provide a better understanding of the physiological processes of seagrasses. To date, little is known about the genome and transcriptome information of H. beccarii. In this study, we used single molecule real-time (SMRT) sequencing to obtain full-length transcriptome data and characterize the transcriptome structure. A total of 11,773 of the 15,348 transcripts were successfully annotated in seven databases. In addition, 1573 long non-coding RNAs, 8402 simple sequence repeats and 2567 transcription factors were predicted in all the transcripts. A GO analysis showed that 5843 transcripts were divided into three categories, including biological process (BP), cellular component (CC) and molecular function (MF). In these three categories, metabolic process (1603 transcripts), protein-containing complex (515 transcripts) and binding (3233 transcripts) were the primary terms in BP, CC, and MF, respectively. The major types of transcription factors were involved in MYB-related and NF-YB families. To the best of our knowledge, this is the first report of the transcriptome of H. beccarii using SMRT sequencing technology.
- 28 September 2022
- Published by Springer Nature in Molecular Biology Reports
- Vol. 49 (12) , 11635-11641
Overexpression of Zostera japonica 14-3-3 gene ZjGRF1 enhances the resistance of transgenic Arabidopsis to copper stress
Background Copper is both a nutrient essential for plant growth and a pollutant. In recent decades, with the rapid development of industrial and agricultural production, copper has been used more and more widely, and its consumption has also increased rapidly. Excessive soil copper contents induce phytotoxicity, affecting plant growth, development and yields. Moreover, copper can accumulate in crops and enter the food chain through enrichment, harming human health. Methods and results In this study, Arabidopsis wild-type (WT) and Zostera japonica 14-3-3 gene ZjGRF1 overexpression lines were used to explore the physiological function and molecular mechanism of ZjGRF1 in Arabidopsis in the copper stress response. Under copper stress, compared with WT plants, transgenic ZjGRF1 Arabidopsis plants exhibited less inhibition of root growth and development and had higher fresh weights. Under copper stress, the soluble sugar and soluble protein contents in transgenic ZjGRF1 Arabidopsis plants were significantly higher than those in WT plants, while the superoxide dismutase (SOD), peroxidase and catalase (CAT) activities were significantly higher than those in WT plants. Additionally, the malonaldehyde content of transgenic plants was significantly lower than that of WT plants. Furthermore, qRT-PCR results showed that under copper stress, the SOD, CAT1 and HMA5 expression levels in transgenic ZjGRF1 Arabidopsis plants were significantly higher than those in WT plants, while COPT1 expression was significantly lower than that in WT plants. Conclusions ZjGRF1 enhanced the copper stress resistance of Arabidopsis by maintaining high antioxidant enzyme activity, increasing copper efflux and reducing copper uptake under copper stress.
- 28 September 2022
- Published by Springer Nature in Molecular Biology Reports
- Vol. 49 (12) , 11635-11641
Overexpression of Zostera japonica 14-3-3 gene ZjGRF1 enhances the resistance of transgenic Arabidopsis to copper stress
Background Copper is both a nutrient essential for plant growth and a pollutant. In recent decades, with the rapid development of industrial and agricultural production, copper has been used more and more widely, and its consumption has also increased rapidly. Excessive soil copper contents induce phytotoxicity, affecting plant growth, development and yields. Moreover, copper can accumulate in crops and enter the food chain through enrichment, harming human health. Methods and results In this study, Arabidopsis wild-type (WT) and Zostera japonica 14-3-3 gene ZjGRF1 overexpression lines were used to explore the physiological function and molecular mechanism of ZjGRF1 in Arabidopsis in the copper stress response. Under copper stress, compared with WT plants, transgenic ZjGRF1 Arabidopsis plants exhibited less inhibition of root growth and development and had higher fresh weights. Under copper stress, the soluble sugar and soluble protein contents in transgenic ZjGRF1 Arabidopsis plants were significantly higher than those in WT plants, while the superoxide dismutase (SOD), peroxidase and catalase (CAT) activities were significantly higher than those in WT plants. Additionally, the malonaldehyde content of transgenic plants was significantly lower than that of WT plants. Furthermore, qRT-PCR results showed that under copper stress, the SOD, CAT1 and HMA5 expression levels in transgenic ZjGRF1 Arabidopsis plants were significantly higher than those in WT plants, while COPT1 expression was significantly lower than that in WT plants. Conclusions ZjGRF1 enhanced the copper stress resistance of Arabidopsis by maintaining high antioxidant enzyme activity, increasing copper efflux and reducing copper uptake under copper stress.
- 20 May 2022
- Published by Springer Nature in Plant Biotechnology Reports
- Vol. 16 (4) , 419-435
Overexpression of the intertidal seagrass J protein ZjDjB1 enhances tolerance to chilling injury
- 20 May 2022
- Published by Springer Nature in Plant Biotechnology Reports
- Vol. 16 (4) , 419-435
Overexpression of the intertidal seagrass J protein ZjDjB1 enhances tolerance to chilling injury
- 15 April 2022
- Published by Springer Nature in Molecular Biology Reports
- Vol. 49 (6) , 4795-4803
14-3-3 gene of Zostera japonica ZjGRF1 participates in gibberellin signaling pathway
Background Zostera japonica is a unique seagrass species in Asia with important ecological value. Gibberellin (GA) is a plant hormone crucial in the regulation of plant growth and development, including seed longevity, seed germination, anti-aging, hypocotyl elongation, leaf development, reproductive organ development, and abiotic stress responses. However, the role of 14-3-3 gene of Z. japonica in GA signaling pathway remains unclear. Methods and results Herein, gibberellin content and expression of GA synthesis genes were lower in Arabidopsis overexpressing ZjGRF1, 14-3-3 gene of Z. japonica, than in wild type (WT). Moreover, the expression level of GA receptors was lower in transgenic ZjGRF1 Arabidopsis than in WT. The expression level of GA response gene expansin8 (EXP8) was lower in transgenic ZjGRF1 Arabidopsis than in WT. In contrast, the expression levels of PACLOBUTRAZOL RESISTANT1 (PRE1), PRE5 and SCARECROW-LIKE 3 (SCL3) were higher in the transgenic ZjGRF1 Arabidopsis than in WT. Transgenic ZjGRF1 Arabidopsis has decreased sensitivity to paclobutrazol, an inhibitor of GA synthesis. The expression level of flowering regulatory genes was lower in transgenic ZjGRF1 Arabidopsis than in WT. Conclusion This is the first study to report the function of 14-3-3 gene family in seagrass. These findings can be used in future studies on the regulation role of 14-3-3 gene on plant development.
- 15 April 2022
- Published by Springer Nature in Molecular Biology Reports
- Vol. 49 (6) , 4795-4803
14-3-3 gene of Zostera japonica ZjGRF1 participates in gibberellin signaling pathway
Background Zostera japonica is a unique seagrass species in Asia with important ecological value. Gibberellin (GA) is a plant hormone crucial in the regulation of plant growth and development, including seed longevity, seed germination, anti-aging, hypocotyl elongation, leaf development, reproductive organ development, and abiotic stress responses. However, the role of 14-3-3 gene of Z. japonica in GA signaling pathway remains unclear. Methods and results Herein, gibberellin content and expression of GA synthesis genes were lower in Arabidopsis overexpressing ZjGRF1, 14-3-3 gene of Z. japonica, than in wild type (WT). Moreover, the expression level of GA receptors was lower in transgenic ZjGRF1 Arabidopsis than in WT. The expression level of GA response gene expansin8 (EXP8) was lower in transgenic ZjGRF1 Arabidopsis than in WT. In contrast, the expression levels of PACLOBUTRAZOL RESISTANT1 (PRE1), PRE5 and SCARECROW-LIKE 3 (SCL3) were higher in the transgenic ZjGRF1 Arabidopsis than in WT. Transgenic ZjGRF1 Arabidopsis has decreased sensitivity to paclobutrazol, an inhibitor of GA synthesis. The expression level of flowering regulatory genes was lower in transgenic ZjGRF1 Arabidopsis than in WT. Conclusion This is the first study to report the function of 14-3-3 gene family in seagrass. These findings can be used in future studies on the regulation role of 14-3-3 gene on plant development.
- 12 April 2022
- Published by Springer Nature in Molecular Biology Reports
- Vol. 49 (7) , 6189-6197
Overexpression of Zostera japonica heat shock protein gene ZjHsp70 enhances the thermotolerance of transgenic Arabidopsis
Background Heat shock protein 70s (Hsp70s) are major members of the heat shock protein family and play a variety of roles to protect plants against stress. Plant Hsp70s are a conserved and widely expressed family of heat shock proteins. They have two main functional regions: N-terminal nucleic acid binding region and C-terminal substrate binding region. Methods and results In this study, we cloned the Hsp70 gene of Zostera japonica (ZjHsp70) based on the sequence obtained by transcriptome sequencing. The transcriptional levels of ZjHsp70 increased significantly at 1 h after heat treatment. ZjHsp70 was located in the cytoplasm and nucleus. The overexpression of ZjHsp70 in Arabidopsis resulted in increased heat tolerance, lower contents of malondialdehyde and higher antioxidant enzyme activity than in the wild type. ZjHsp70 may achieve this goal by maintaining highly active antioxidant enzymes. Conclusions We show that ZjHsp70 can improve plant heat tolerance by maintaining high antioxidant enzyme activity under high temperature stress. This study provided a basis to study the role of ZjHsp70 in thermotolerance in more detail.
- 12 April 2022
- Published by Springer Nature in Molecular Biology Reports
- Vol. 49 (7) , 6189-6197
Overexpression of Zostera japonica heat shock protein gene ZjHsp70 enhances the thermotolerance of transgenic Arabidopsis
Background Heat shock protein 70s (Hsp70s) are major members of the heat shock protein family and play a variety of roles to protect plants against stress. Plant Hsp70s are a conserved and widely expressed family of heat shock proteins. They have two main functional regions: N-terminal nucleic acid binding region and C-terminal substrate binding region. Methods and results In this study, we cloned the Hsp70 gene of Zostera japonica (ZjHsp70) based on the sequence obtained by transcriptome sequencing. The transcriptional levels of ZjHsp70 increased significantly at 1 h after heat treatment. ZjHsp70 was located in the cytoplasm and nucleus. The overexpression of ZjHsp70 in Arabidopsis resulted in increased heat tolerance, lower contents of malondialdehyde and higher antioxidant enzyme activity than in the wild type. ZjHsp70 may achieve this goal by maintaining highly active antioxidant enzymes. Conclusions We show that ZjHsp70 can improve plant heat tolerance by maintaining high antioxidant enzyme activity under high temperature stress. This study provided a basis to study the role of ZjHsp70 in thermotolerance in more detail.
- Open Access
- 15 November 2021
- Published by Springer Nature in Research Square
14-3-3 Gene of Zostera Japonica ZjGRF1 Participates in Gibberellin Signaling Pathway
Background Zostera japonica (Z. japonica) is a unique seagrass species in Asia, which has important ecological value. Gibberellin is an important plant hormone, which plays an important role in the regulation of plant growth and development, including seed longevity, seed germination, anti-aging, hypocotyl elongation, leaf development, reproductive organ development and abiotic stress. However, the role of 14-3-3 gene of Z. japonica in GA signaling pathway is still unclear. Methods and results Here, we found that the gibberellin content of Arabidopsis overexpressing ZjGRF1, 14-3-3 gene of Z. japonica, is lower than that of wild type (WT), and the expression of gibberellin synthesis genes is lower than that of WT. The expression level of gibberellin receptors in transgenic ZjGRF1 Arabidopsis was lower than that in WT. The expression level of GA response genes EXP8 in transgenic ZjGRF1 Arabidopsis was lower than that in WT, and the expression levels of PRE1, PRE5 and SCL3 were higher than that in WT. Transgenic ZjGRF1 Arabidopsis is insensitive to paclobutrazol, an inhibitor of gibberellin synthesis. The expression level of flowering regulatory genes in transgenic ZjGRF1 Arabidopsis was lower than that in WT. Conclusion This is the first report on the function of 14-3-3 gene family in seagrass. Our findings can be further utilized in future studies on regulation of 14-3-3 gene on plant development.
- 15 November 2021
- Published by Springer Nature in Research Square
Open Access14-3-3 Gene of Zostera Japonica ZjGRF1 Participates in Gibberellin Signaling Pathway
Background Zostera japonica (Z. japonica) is a unique seagrass species in Asia, which has important ecological value. Gibberellin is an important plant hormone, which plays an important role in the regulation of plant growth and development, including seed longevity, seed germination, anti-aging, hypocotyl elongation, leaf development, reproductive organ development and abiotic stress. However, the role of 14-3-3 gene of Z. japonica in GA signaling pathway is still unclear. Methods and results Here, we found that the gibberellin content of Arabidopsis overexpressing ZjGRF1, 14-3-3 gene of Z. japonica, is lower than that of wild type (WT), and the expression of gibberellin synthesis genes is lower than that of WT. The expression level of gibberellin receptors in transgenic ZjGRF1 Arabidopsis was lower than that in WT. The expression level of GA response genes EXP8 in transgenic ZjGRF1 Arabidopsis was lower than that in WT, and the expression levels of PRE1, PRE5 and SCL3 were higher than that in WT. Transgenic ZjGRF1 Arabidopsis is insensitive to paclobutrazol, an inhibitor of gibberellin synthesis. The expression level of flowering regulatory genes in transgenic ZjGRF1 Arabidopsis was lower than that in WT. Conclusion This is the first report on the function of 14-3-3 gene family in seagrass. Our findings can be further utilized in future studies on regulation of 14-3-3 gene on plant development.