Cansu Umran Tunc
Current Organizations / Institutes
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Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Cansu Umran Tunc has a total of 28 co-authors. Here are the top co-authors by number of shared publications:
- Omer Aydin
Erciyes University
4 shared publications - Dilek Kanarya
Nanothera Lab, Drug Application and Research Center (ERFARMA), Erciyes University, 38039, Kayseri, Turkeyhttps://ror.org/047g8vk19https://www.isni.org/isni
2 shared publications Mustafa Çulha
Department of Genetics and Bioengineering, Yeditepe University, Istanbul, Turkey
2 shared publications- Anup Kumar Patel
Department of Radiology, City of Hope National Medical Center, 1500 East Duarte Rd., Duarte, California 91010, USAhttps://ror.org/00w6g5w60https://www.isni.org/isni
1 shared publication Aybuke Ulku Kutlu
Nanothera Lab, Drug Application and Research Center (ERFARMA), Erciyes University, Kayseri 38039, Turkey
1 shared publication- Deniz Uzunoglu
Yeditepe University, Faculty of Engineering, Department of Genetics and Bioengineering, 34755, Istanbul, Turkey
1 shared publication
Latest Publications
- Open Access
- 11 March 2026
- Published by MDPI AG in Pharmaceutics
- Vol. 18 (3) , 344
Modulation of Cell Signaling Pathways in Silica Nanoparticle-Saturated Macrophages
Background/Objectives: Upon systemic delivery, macrophages take up a significant portion of nanoparticles and may become saturated. The saturation of macrophages may pose risks to overall immune function and signaling pathways. While some information is available on the survival and functionality of macrophages upon saturation with nanoparticles, there is limited understanding of the molecular-level changes that can occur and their corresponding influences on macrophage phenotypes, gene expression, and immune signaling pathways. Methods: In this study, RAW 264.7 macrophages were saturated with silica nanoparticles (SNPs) of different sizes (50 and 100 nm), porosities (nonporous, mesoporous), densities (solid, mesoporous, and hollow), and surface compositions (hydrophobicity) at their maximum non-toxic concentrations. The saturated macrophages were evaluated for changes in gene expression and immune signaling pathways by RNA sequencing, weighted gene co-expression network analysis (WGCNA), and Hallmark and KEGG pathway analyses. Results: Our results show that in the range studied, the particle size did not have a significant effect on the gene expression profile. Porous SNPs of comparable sizes resulted in increased and unique changes in the gene expression profile compared to nonporous SNPs. Major immune signaling pathways, including TNF-alpha signaling via NF-κB pathways, mTORC1 signaling, and p53 pathways, were modulated in SNP-saturated macrophages. This modulation depended on the physicochemical properties of the particles. The Th1/Th2 multiplex immunoassay revealed that the uptake of SNPs increases the amount of the TNF-alpha cytokine compared to the nontreated controls, whereas no changes in IL-6 and IL-12p70 pro-inflammatory cytokines were observed. Conclusions: Our results demonstrate that physicochemical properties of SNPs, such as porosity, size, surface functionality, and density, influence the modulation of gene expression and macrophage immune signaling pathways. These results, along with others, can provide guidance on the selection of silica nanoparticles for the safe and effective systemic delivery of bioactive agents.
- 11 March 2026
- Published by MDPI AG in Pharmaceutics
- Vol. 18 (3) , 344
Open AccessModulation of Cell Signaling Pathways in Silica Nanoparticle-Saturated Macrophages
Background/Objectives: Upon systemic delivery, macrophages take up a significant portion of nanoparticles and may become saturated. The saturation of macrophages may pose risks to overall immune function and signaling pathways. While some information is available on the survival and functionality of macrophages upon saturation with nanoparticles, there is limited understanding of the molecular-level changes that can occur and their corresponding influences on macrophage phenotypes, gene expression, and immune signaling pathways. Methods: In this study, RAW 264.7 macrophages were saturated with silica nanoparticles (SNPs) of different sizes (50 and 100 nm), porosities (nonporous, mesoporous), densities (solid, mesoporous, and hollow), and surface compositions (hydrophobicity) at their maximum non-toxic concentrations. The saturated macrophages were evaluated for changes in gene expression and immune signaling pathways by RNA sequencing, weighted gene co-expression network analysis (WGCNA), and Hallmark and KEGG pathway analyses. Results: Our results show that in the range studied, the particle size did not have a significant effect on the gene expression profile. Porous SNPs of comparable sizes resulted in increased and unique changes in the gene expression profile compared to nonporous SNPs. Major immune signaling pathways, including TNF-alpha signaling via NF-κB pathways, mTORC1 signaling, and p53 pathways, were modulated in SNP-saturated macrophages. This modulation depended on the physicochemical properties of the particles. The Th1/Th2 multiplex immunoassay revealed that the uptake of SNPs increases the amount of the TNF-alpha cytokine compared to the nontreated controls, whereas no changes in IL-6 and IL-12p70 pro-inflammatory cytokines were observed. Conclusions: Our results demonstrate that physicochemical properties of SNPs, such as porosity, size, surface functionality, and density, influence the modulation of gene expression and macrophage immune signaling pathways. These results, along with others, can provide guidance on the selection of silica nanoparticles for the safe and effective systemic delivery of bioactive agents.
- Open Access
- 5 August 2025
- Published by Beilstein Institut in Beilstein Journal of Nanotechnology
- Vol. 16 (1) , 1246-1276
Better together: biomimetic nanomedicines for high performance tumor therapy
The emergence of nanotechnology offers a promising avenue for enhancing cancer treatment outcomes. In this context, biomimetic nanoparticles have emerged as an exciting frontier in the field of biomedicine. These nanoparticles can emulate essential biological functions, drawing from an abundant reservoir of cellular capabilities. This includes engaging in biological binding, precise homing to tumor sites, and interaction with immune cells. These inherent traits endow biomimetic nanoparticles with a suite of intelligent features, including biocompatibility, low immunogenicity, reduced toxicity, immune evasion, prolonged circulation, homotypic binding, enhanced tumor targeting, and the capability of precise delivery. By integrating biologically inspired coatings derived from cell membranes with nanoparticle cores, these carriers become highly versatile vessels for encapsulating a wide array of therapeutic agents. As a result, they are being extensively harnessed for the precise delivery of drugs and genes, underpinning numerous biomedical applications. This discussion delves into the challenges and opportunities presented by biomimetic nanoparticles and offers a comprehensive exploration of their fundamentals and recent breakthroughs, with an eye towards clinical translation. By bridging the gap between scientific innovation and clinical utility, biomimetic nanoparticles hold great promise for advancing the field of cancer treatment.
- 5 August 2025
- Published by Beilstein Institut in Beilstein Journal of Nanotechnology
- Vol. 16 (1) , 1246-1276
Open AccessBetter together: biomimetic nanomedicines for high performance tumor therapy
The emergence of nanotechnology offers a promising avenue for enhancing cancer treatment outcomes. In this context, biomimetic nanoparticles have emerged as an exciting frontier in the field of biomedicine. These nanoparticles can emulate essential biological functions, drawing from an abundant reservoir of cellular capabilities. This includes engaging in biological binding, precise homing to tumor sites, and interaction with immune cells. These inherent traits endow biomimetic nanoparticles with a suite of intelligent features, including biocompatibility, low immunogenicity, reduced toxicity, immune evasion, prolonged circulation, homotypic binding, enhanced tumor targeting, and the capability of precise delivery. By integrating biologically inspired coatings derived from cell membranes with nanoparticle cores, these carriers become highly versatile vessels for encapsulating a wide array of therapeutic agents. As a result, they are being extensively harnessed for the precise delivery of drugs and genes, underpinning numerous biomedical applications. This discussion delves into the challenges and opportunities presented by biomimetic nanoparticles and offers a comprehensive exploration of their fundamentals and recent breakthroughs, with an eye towards clinical translation. By bridging the gap between scientific innovation and clinical utility, biomimetic nanoparticles hold great promise for advancing the field of cancer treatment.
- Open Access
- 9 June 2023
- Published by American Chemical Society (ACS) in ACS Materials Au
- Vol. 3 (5) , 483-491
Investigation of Gold Nanoparticle Naproxen-Derived Conjugations in Ovarian Cancer
Ovarian cancer, which is one of the most diagnosed cancer types among women, maintains its significance as a global health problem. Several drug candidates have been investigated for the potential treatment of ovarian cancer. Nonsteroidal anti-inflammatory drugs (NSAIDs) demonstrated anti-cancer activity through the inhibition of cyclooxygenase 2 (COX-2) and by inhibiting COX-2-dependent prostaglandin (PG) production. Naproxen is one of the most used NSAIDs and Naproxen-derived compounds (NDCs) may show potential treatment effects on cancer as chemotherapeutic drugs. Although there are successful drug development studies, the lack of solubility of these drug candidates in aqueous media results in limited bioavailability and high variability of patient responses during treatment. Low aqueous solubility is one of the main problems in the pharmaceutical industry in terms of drug development. Nanotechnology-based strategies provide solutions to hydrophobic drug limitations by increasing dispersion and improving internalization. In this study, two different NDCs (NDC-1 and NDC-2) bearing a thiosemicarbazide/1,2,4-triazole moiety were synthesized and tested for chemotherapeutic effects on ovarian cancer cells, which have a high COX-2 expression. To overcome the limited dispersion of these hydrophobic drugs, the drug molecules were conjugated to the surface of 13 nm AuNPs. Conjugation of drugs to AuNPs increased the distribution of drugs in aqueous media, and NDC@AuNP conjugates exhibited excellent colloidal stability for up to 8 weeks. The proposed system demonstrated an increased chemotherapeutic effect than the free drug counterparts with at least 5 times lower IC50 values. NDC@AuNP nanosystems induced higher apoptosis rates, which established a simple and novel way to investigate activity of prospective drugs in drug discovery research.
- 9 June 2023
- Published by American Chemical Society (ACS) in ACS Materials Au
- Vol. 3 (5) , 483-491
Open AccessInvestigation of Gold Nanoparticle Naproxen-Derived Conjugations in Ovarian Cancer
Ovarian cancer, which is one of the most diagnosed cancer types among women, maintains its significance as a global health problem. Several drug candidates have been investigated for the potential treatment of ovarian cancer. Nonsteroidal anti-inflammatory drugs (NSAIDs) demonstrated anti-cancer activity through the inhibition of cyclooxygenase 2 (COX-2) and by inhibiting COX-2-dependent prostaglandin (PG) production. Naproxen is one of the most used NSAIDs and Naproxen-derived compounds (NDCs) may show potential treatment effects on cancer as chemotherapeutic drugs. Although there are successful drug development studies, the lack of solubility of these drug candidates in aqueous media results in limited bioavailability and high variability of patient responses during treatment. Low aqueous solubility is one of the main problems in the pharmaceutical industry in terms of drug development. Nanotechnology-based strategies provide solutions to hydrophobic drug limitations by increasing dispersion and improving internalization. In this study, two different NDCs (NDC-1 and NDC-2) bearing a thiosemicarbazide/1,2,4-triazole moiety were synthesized and tested for chemotherapeutic effects on ovarian cancer cells, which have a high COX-2 expression. To overcome the limited dispersion of these hydrophobic drugs, the drug molecules were conjugated to the surface of 13 nm AuNPs. Conjugation of drugs to AuNPs increased the distribution of drugs in aqueous media, and NDC@AuNP conjugates exhibited excellent colloidal stability for up to 8 weeks. The proposed system demonstrated an increased chemotherapeutic effect than the free drug counterparts with at least 5 times lower IC50 values. NDC@AuNP nanosystems induced higher apoptosis rates, which established a simple and novel way to investigate activity of prospective drugs in drug discovery research.
- 7 February 2022
- Published by Royal Society of Chemistry (RSC) in The Analyst
- Vol. 147 (6) , 1213-1221
Investigation of mammalian cells expressing SARS-CoV-2 proteins by surface-enhanced Raman scattering and multivariate analysis
COVID-19 has caused millions of cases and deaths all over the world since late 2019. Rapid detection of the virus is crucial for controlling its spread through a population. COVID-19 is currently detected by nucleic acid-based tests and serological tests. However, these methods have limitations such as the requirement of high-cost reagents, false negative results and being time consuming. Surface-enhanced Raman scattering (SERS), which is a powerful technique that enhances the Raman signals of molecules using plasmonic nanostructures, can overcome these disadvantages. In this study, we developed a virus-infected cell model and analyzed this model by SERS combined with Principal Component Analysis (PCA). HEK293 cells were transfected with plasmids encoding the nucleocapsid (N), membrane (M) and envelope (E) proteins of SARS-CoV-2 via polyethyleneimine (PEI). Non-plasmid transfected HEK293 cells were used as the control group. Cellular uptake was optimized with green fluorescence protein (GFP) plasmids and evaluated by fluorescence microscopy and flow cytometry. The transfection efficiency was found to be around 60%. The expression of M, N, and E proteins was demonstrated by western blotting. The SERS spectra of the total proteins of transfected cells were obtained using a gold nanoparticle-based SERS substrate. Proteins of the transfected cells have peak positions at 646, 680, 713, 768, 780, 953, 1014, 1046, 1213, 1243, 1424, 2102, and 2124 cm−1. To reveal spectral differences between plasmid transfected cells and non-transfected control cells, PCA was applied to the spectra. The results demonstrated that SERS coupled with PCA might be a favorable and reliable way to develop a rapid, low-cost, and promising technique for the detection of COVID-19.
- 7 February 2022
- Published by Royal Society of Chemistry (RSC) in The Analyst
- Vol. 147 (6) , 1213-1221
Investigation of mammalian cells expressing SARS-CoV-2 proteins by surface-enhanced Raman scattering and multivariate analysis
COVID-19 has caused millions of cases and deaths all over the world since late 2019. Rapid detection of the virus is crucial for controlling its spread through a population. COVID-19 is currently detected by nucleic acid-based tests and serological tests. However, these methods have limitations such as the requirement of high-cost reagents, false negative results and being time consuming. Surface-enhanced Raman scattering (SERS), which is a powerful technique that enhances the Raman signals of molecules using plasmonic nanostructures, can overcome these disadvantages. In this study, we developed a virus-infected cell model and analyzed this model by SERS combined with Principal Component Analysis (PCA). HEK293 cells were transfected with plasmids encoding the nucleocapsid (N), membrane (M) and envelope (E) proteins of SARS-CoV-2 via polyethyleneimine (PEI). Non-plasmid transfected HEK293 cells were used as the control group. Cellular uptake was optimized with green fluorescence protein (GFP) plasmids and evaluated by fluorescence microscopy and flow cytometry. The transfection efficiency was found to be around 60%. The expression of M, N, and E proteins was demonstrated by western blotting. The SERS spectra of the total proteins of transfected cells were obtained using a gold nanoparticle-based SERS substrate. Proteins of the transfected cells have peak positions at 646, 680, 713, 768, 780, 953, 1014, 1046, 1213, 1243, 1424, 2102, and 2124 cm−1. To reveal spectral differences between plasmid transfected cells and non-transfected control cells, PCA was applied to the spectra. The results demonstrated that SERS coupled with PCA might be a favorable and reliable way to develop a rapid, low-cost, and promising technique for the detection of COVID-19.
- 16 December 2019
- Published by SAGE Publications in Human Gene Therapy
- Vol. 30 (12) , 1547-1558
Silencing Breast Cancer Genes Using Morpholino Embedded DNA-Tile-AuNPs Nanostructures
There is an ongoing effort to increase the efficiency of gene delivery for the regulation of diseases-related genes. In this report, we demonstrate the efficiency of a DNA-based nanostructure to deliver morpholino antisense oligonucleotides for the upregulated genes in breast cancer as an alternative to the currently used delivery systems. A DNA-tile structure is constructed by embedding antisense oligonucleotides targeting the HER2 and ERα genes. Then, the sticky ends of the DNA-tile nanostructures are hybridized to gold nanoparticles (AuNPs) coated with the complementary oligonucleotides to enhance their cellular uptake. It is found that the morpholino antisense oligonucleotide embedded DNA-tile-AuNPs structure is 30% more effective than the liposome-based system to deliver morpholinos and induce gene silencing in breast cancer cells. The results of the study suggest that the prepared novel nanostructure is an effective and biocompatible carrier that can be used in in vitro gene silencing studies and can be further pursued in in vivo studies.
- 16 December 2019
- Published by SAGE Publications in Human Gene Therapy
- Vol. 30 (12) , 1547-1558
Silencing Breast Cancer Genes Using Morpholino Embedded DNA-Tile-AuNPs Nanostructures
There is an ongoing effort to increase the efficiency of gene delivery for the regulation of diseases-related genes. In this report, we demonstrate the efficiency of a DNA-based nanostructure to deliver morpholino antisense oligonucleotides for the upregulated genes in breast cancer as an alternative to the currently used delivery systems. A DNA-tile structure is constructed by embedding antisense oligonucleotides targeting the HER2 and ERα genes. Then, the sticky ends of the DNA-tile nanostructures are hybridized to gold nanoparticles (AuNPs) coated with the complementary oligonucleotides to enhance their cellular uptake. It is found that the morpholino antisense oligonucleotide embedded DNA-tile-AuNPs structure is 30% more effective than the liposome-based system to deliver morpholinos and induce gene silencing in breast cancer cells. The results of the study suggest that the prepared novel nanostructure is an effective and biocompatible carrier that can be used in in vitro gene silencing studies and can be further pursued in in vivo studies.
- 1 August 2017
- Published by Elsevier in Journal of Biotechnology
- Vol. 256, S93
Delivery of morpholino antisense oligonucleotides using DNA Tile-AuNPs nanostructures
- 1 August 2017
- Published by Elsevier in Journal of Biotechnology
- Vol. 256, S93
Delivery of morpholino antisense oligonucleotides using DNA Tile-AuNPs nanostructures
- 26 February 2016
- Published by Taylor & Francis in Journal of Drug Targeting
- Vol. 24 (8) , 709-719
Lactose-modified DNA tile nanostructures as drug carriers
Background: DNA hybridization allows the preparation of nanoscale DNA structures with desired shape and size. DNA structures using simple base pairing can be used for the delivery of drug molecules into the cells. Since DNA carries multiple negative charges, their cellular uptake efficiency is low. Thus, the modification of the DNA structures with molecules that may enhance the cellular internalization may be an option. Objective: To construct DNA based nanocarrier system and investigate the cellular uptake of DNA tile with/without lactose modification. Methods: Doxorubicin was intercalated to DNA tile and cellular uptake of drug loaded DNA based carrier with/without lactose modification was investigated in vitro. HeLa, BT-474, and MDA-MB-231 cancer cells were used for cellular uptake studies and cytotoxicity assays. Using fluorescence spectroscopy, flow cytometry and confocal microscopy, cellular uptake behavior of DNA tile was investigated. The cytotoxicity of DNA tile structures was determined with WST-1 assay. Results: The results show that modification with lactose effectively increases the intracellular uptake of doxorubicin loaded DNA tile structure by cancer cells compared to the unmodified DNA tile. Conclusion: The findings of this study suggest that DNA based nanostructures modified with carbohydrates can be used as suitable multifunctional nanocarriers with simple chemical modifications.
- 26 February 2016
- Published by Taylor & Francis in Journal of Drug Targeting
- Vol. 24 (8) , 709-719
Lactose-modified DNA tile nanostructures as drug carriers
Background: DNA hybridization allows the preparation of nanoscale DNA structures with desired shape and size. DNA structures using simple base pairing can be used for the delivery of drug molecules into the cells. Since DNA carries multiple negative charges, their cellular uptake efficiency is low. Thus, the modification of the DNA structures with molecules that may enhance the cellular internalization may be an option. Objective: To construct DNA based nanocarrier system and investigate the cellular uptake of DNA tile with/without lactose modification. Methods: Doxorubicin was intercalated to DNA tile and cellular uptake of drug loaded DNA based carrier with/without lactose modification was investigated in vitro. HeLa, BT-474, and MDA-MB-231 cancer cells were used for cellular uptake studies and cytotoxicity assays. Using fluorescence spectroscopy, flow cytometry and confocal microscopy, cellular uptake behavior of DNA tile was investigated. The cytotoxicity of DNA tile structures was determined with WST-1 assay. Results: The results show that modification with lactose effectively increases the intracellular uptake of doxorubicin loaded DNA tile structure by cancer cells compared to the unmodified DNA tile. Conclusion: The findings of this study suggest that DNA based nanostructures modified with carbohydrates can be used as suitable multifunctional nanocarriers with simple chemical modifications.